data_THP # _chem_comp.id THP _chem_comp.name "THYMIDINE-3',5'-DIPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H16 N2 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces PTP _chem_comp.formula_weight 402.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code THP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1STG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal THP P2 P2 P 0 1 N N N 6.290 13.958 20.661 2.694 0.181 -3.289 P2 THP 1 THP O4P O4P O 0 1 N N N 5.063 13.885 19.838 2.796 1.567 -2.780 O4P THP 2 THP O5P O5P O 0 1 N N N 7.490 14.673 20.175 4.162 -0.358 -3.670 O5P THP 3 THP O6P O6P O 0 1 N N N 6.701 12.473 21.063 1.757 0.158 -4.598 O6P THP 4 THP P1 P1 P 0 1 N N N 5.064 11.601 26.444 -3.072 0.194 -1.973 P1 THP 5 THP O1P O1P O 0 1 N N N 4.651 11.241 27.804 -2.106 1.046 -2.701 O1P THP 6 THP O2P O2P O 0 1 N N N 6.411 11.514 25.849 -4.201 -0.330 -2.994 O2P THP 7 THP O3P O3P O 0 1 N N N 4.119 10.747 25.471 -3.766 1.050 -0.799 O3P THP 8 THP "O5'" O5* O 0 1 N N N 5.894 14.579 22.057 2.053 -0.761 -2.153 "O5'" THP 9 THP "C5'" C5* C 0 1 N N N 4.863 14.017 22.822 0.758 -0.233 -1.859 "C5'" THP 10 THP "C4'" C4* C 0 1 N N R 5.276 14.110 24.267 0.091 -1.088 -0.780 "C4'" THP 11 THP "O4'" O4* O 0 1 N N N 5.591 15.470 24.609 0.807 -0.985 0.471 "O4'" THP 12 THP "C3'" C3* C 0 1 N N S 4.121 13.716 25.146 -1.317 -0.537 -0.441 "C3'" THP 13 THP "O3'" O3* O 0 1 N N N 4.610 13.145 26.358 -2.300 -1.065 -1.333 "O3'" THP 14 THP "C2'" C2* C 0 1 N N N 3.403 15.001 25.434 -1.534 -1.067 0.997 "C2'" THP 15 THP "C1'" C1* C 0 1 N N R 4.563 15.983 25.466 -0.111 -1.363 1.509 "C1'" THP 16 THP N1 N1 N 0 1 N N N 4.016 17.276 25.022 0.154 -0.582 2.719 N1 THP 17 THP C2 C2 C 0 1 N N N 3.631 18.155 26.018 0.095 0.761 2.671 C2 THP 18 THP O2 O2 O 0 1 N N N 3.818 17.953 27.207 -0.178 1.311 1.623 O2 THP 19 THP N3 N3 N 0 1 N N N 3.022 19.309 25.624 0.335 1.503 3.768 N3 THP 20 THP C4 C4 C 0 1 N N N 2.766 19.675 24.328 0.635 0.907 4.940 C4 THP 21 THP O4 O4 O 0 1 N N N 2.158 20.720 24.135 0.852 1.579 5.933 O4 THP 22 THP C5 C5 C 0 1 N N N 3.205 18.734 23.312 0.705 -0.504 5.003 C5 THP 23 THP C5M C5M C 0 1 N N N 3.037 19.091 21.820 1.043 -1.195 6.299 C5M THP 24 THP C6 C6 C 0 1 N N N 3.806 17.577 23.684 0.460 -1.225 3.888 C6 THP 25 THP HOP5 5HOP H 0 0 N N N 8.278 14.719 20.703 4.509 0.232 -4.352 HOP5 THP 26 THP HOP6 6HOP H 0 0 N N N 7.489 12.519 21.591 1.717 -0.760 -4.897 HOP6 THP 27 THP HOP2 2HOP H 0 0 N N N 6.678 11.747 24.967 -4.638 0.453 -3.354 HOP2 THP 28 THP HOP3 3HOP H 0 0 N N N 4.386 10.980 24.589 -4.386 0.459 -0.351 HOP3 THP 29 THP "H5'1" 1H5* H 0 0 N N N 3.869 14.480 22.621 0.148 -0.245 -2.762 "H5'1" THP 30 THP "H5'2" 2H5* H 0 0 N N N 4.603 12.978 22.508 0.857 0.791 -1.501 "H5'2" THP 31 THP "H4'" H4* H 0 1 N N N 6.157 13.443 24.414 0.029 -2.128 -1.100 "H4'" THP 32 THP "H3'" H3* H 0 1 N N N 3.456 12.960 24.665 -1.323 0.552 -0.458 "H3'" THP 33 THP "H2'1" 1H2* H 0 0 N N N 2.578 15.257 24.728 -2.131 -1.979 0.981 "H2'1" THP 34 THP "H2'2" 2H2* H 0 0 N N N 2.756 14.994 26.342 -2.012 -0.308 1.615 "H2'2" THP 35 THP "H1'" H1* H 0 1 N N N 5.019 16.120 26.473 -0.009 -2.427 1.725 "H1'" THP 36 THP H3 H3 H 0 1 N N N 2.733 19.952 26.360 0.288 2.471 3.716 H3 THP 37 THP H51 1H5 H 0 1 N N N 3.373 18.368 21.040 1.206 -0.448 7.077 H51 THP 38 THP H52 2H5 H 0 1 N N N 1.966 19.342 21.633 0.219 -1.847 6.589 H52 THP 39 THP H53 3H5 H 0 1 N N N 3.530 20.073 21.631 1.948 -1.788 6.170 H53 THP 40 THP H6 H6 H 0 1 N N N 4.125 16.876 22.893 0.505 -2.303 3.918 H6 THP 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THP P2 O4P DOUB N N 1 THP P2 O5P SING N N 2 THP P2 O6P SING N N 3 THP P2 "O5'" SING N N 4 THP O5P HOP5 SING N N 5 THP O6P HOP6 SING N N 6 THP P1 O1P DOUB N N 7 THP P1 O2P SING N N 8 THP P1 O3P SING N N 9 THP P1 "O3'" SING N N 10 THP O2P HOP2 SING N N 11 THP O3P HOP3 SING N N 12 THP "O5'" "C5'" SING N N 13 THP "C5'" "C4'" SING N N 14 THP "C5'" "H5'1" SING N N 15 THP "C5'" "H5'2" SING N N 16 THP "C4'" "O4'" SING N N 17 THP "C4'" "C3'" SING N N 18 THP "C4'" "H4'" SING N N 19 THP "O4'" "C1'" SING N N 20 THP "C3'" "O3'" SING N N 21 THP "C3'" "C2'" SING N N 22 THP "C3'" "H3'" SING N N 23 THP "C2'" "C1'" SING N N 24 THP "C2'" "H2'1" SING N N 25 THP "C2'" "H2'2" SING N N 26 THP "C1'" N1 SING N N 27 THP "C1'" "H1'" SING N N 28 THP N1 C2 SING N N 29 THP N1 C6 SING N N 30 THP C2 O2 DOUB N N 31 THP C2 N3 SING N N 32 THP N3 C4 SING N N 33 THP N3 H3 SING N N 34 THP C4 O4 DOUB N N 35 THP C4 C5 SING N N 36 THP C5 C5M SING N N 37 THP C5 C6 DOUB N N 38 THP C5M H51 SING N N 39 THP C5M H52 SING N N 40 THP C5M H53 SING N N 41 THP C6 H6 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THP SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(OP(=O)(O)O)C2)COP(=O)(O)O" THP SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O" THP SMILES CACTVS 3.341 "CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O" THP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)OP(=O)(O)O" THP SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)OP(=O)(O)O" THP InChI InChI 1.03 "InChI=1S/C10H16N2O11P2/c1-5-3-12(10(14)11-9(5)13)8-2-6(23-25(18,19)20)7(22-8)4-21-24(15,16)17/h3,6-8H,2,4H2,1H3,(H,11,13,14)(H2,15,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1" THP InChIKey InChI 1.03 CSNCBOPUCJOHLS-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THP "SYSTEMATIC NAME" ACDLabs 10.04 ;thymidine 3',5'-bis(dihydrogen phosphate) ; THP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3-phosphonooxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site THP "Create component" 1999-07-08 EBI THP "Modify descriptor" 2011-06-04 RCSB #