data_THS # _chem_comp.id THS _chem_comp.name "THYMIDINE-5'-(DITHIO)PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N2 O6 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.340 _chem_comp.one_letter_code ? _chem_comp.three_letter_code THS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal THS P P P 0 1 N N N 19.867 19.259 -3.202 0.801 0.175 -3.653 P THS 1 THS O1P O1P O 0 1 N Y N 19.705 19.283 -4.863 1.357 1.458 -3.169 O1P THS 2 THS S2P S2P S 0 1 N N N 21.262 18.004 -2.659 2.316 -0.918 -4.655 S2P THS 3 THS S3P S3P S 0 1 N N N 19.858 21.065 -2.455 -0.796 0.558 -4.993 S3P THS 4 THS "O5'" O5* O 0 1 N N N 18.486 18.544 -2.765 0.259 -0.681 -2.402 "O5'" THS 5 THS "C5'" C5* C 0 1 N N N 17.259 19.235 -2.961 -0.753 0.104 -1.772 "C5'" THS 6 THS "C4'" C4* C 0 1 N N R 16.433 19.067 -1.733 -1.313 -0.656 -0.568 "C4'" THS 7 THS "O4'" O4* O 0 1 N N N 16.228 17.696 -1.507 -0.303 -0.815 0.453 "O4'" THS 8 THS "C3'" C3* C 0 1 N N S 17.065 19.590 -0.438 -2.416 0.173 0.136 "C3'" THS 9 THS "O3'" O3* O 0 1 N N N 15.928 20.159 0.169 -3.689 -0.045 -0.473 "O3'" THS 10 THS "C2'" C2* C 0 1 N N N 17.581 18.402 0.340 -2.386 -0.401 1.573 "C2'" THS 11 THS "C1'" C1* C 0 1 N N R 16.760 17.251 -0.230 -0.994 -1.052 1.690 "C1'" THS 12 THS N1 N1 N 0 1 N N N 17.506 15.959 -0.396 -0.253 -0.447 2.799 N1 THS 13 THS C2 C2 C 0 1 N N N 16.955 14.859 0.307 0.002 0.873 2.788 C2 THS 14 THS O2 O2 O 0 1 N N N 16.003 14.950 1.103 -0.385 1.550 1.856 O2 THS 15 THS N3 N3 N 0 1 N N N 17.559 13.644 0.072 0.681 1.455 3.794 N3 THS 16 THS C4 C4 C 0 1 N N N 18.606 13.404 -0.775 1.114 0.718 4.837 C4 THS 17 THS O4 O4 O 0 1 N N N 19.029 12.250 -0.898 1.728 1.244 5.748 O4 THS 18 THS C5 C5 C 0 1 N N N 19.110 14.581 -1.456 0.856 -0.673 4.859 C5 THS 19 THS C5M C5M C 0 1 N N N 20.298 14.379 -2.399 1.332 -1.520 6.011 C5M THS 20 THS C6 C6 C 0 1 N N N 18.569 15.807 -1.261 0.172 -1.231 3.837 C6 THS 21 THS HSP2 2HSP H 0 0 N N N 21.354 17.990 -1.713 2.621 -0.049 -5.636 HSP2 THS 22 THS HSP3 3HSP H 0 0 N N N 19.950 21.051 -1.509 -1.147 -0.701 -5.304 HSP3 THS 23 THS "H5'1" 1H5* H 0 0 N N N 17.406 20.304 -3.238 -1.556 0.301 -2.482 "H5'1" THS 24 THS "H5'2" 2H5* H 0 0 N N N 16.726 18.913 -3.886 -0.324 1.049 -1.437 "H5'2" THS 25 THS "H4'" H4* H 0 1 N N N 15.508 19.655 -1.937 -1.702 -1.627 -0.876 "H4'" THS 26 THS "H3'" H3* H 0 1 N N N 17.922 20.296 -0.536 -2.165 1.234 0.136 "H3'" THS 27 THS "HO3'" *HO3 H 0 0 N N N 16.319 20.483 0.971 -4.342 0.422 0.064 "HO3'" THS 28 THS "H2'1" 1H2* H 0 0 N N N 18.685 18.256 0.295 -3.169 -1.148 1.701 "H2'1" THS 29 THS "H2'2" 2H2* H 0 0 N N N 17.529 18.510 1.448 -2.496 0.397 2.306 "H2'2" THS 30 THS "H1'" H1* H 0 1 N N N 15.958 17.010 0.506 -1.100 -2.125 1.856 "H1'" THS 31 THS HN3 HN3 H 0 1 N N N 17.192 12.837 0.578 0.856 2.408 3.770 HN3 THS 32 THS HM51 1HM5 H 0 0 N N N 20.685 15.283 -2.922 1.860 -0.892 6.730 HM51 THS 33 THS HM52 2HM5 H 0 0 N N N 21.130 13.881 -1.848 0.476 -1.988 6.497 HM52 THS 34 THS HM53 3HM5 H 0 0 N N N 20.048 13.592 -3.149 2.006 -2.292 5.640 HM53 THS 35 THS H6 H6 H 0 1 N N N 18.989 16.672 -1.800 -0.036 -2.290 3.838 H6 THS 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THS P O1P DOUB N N 1 THS P S2P SING N N 2 THS P S3P SING N N 3 THS P "O5'" SING N N 4 THS S2P HSP2 SING N N 5 THS S3P HSP3 SING N N 6 THS "O5'" "C5'" SING N N 7 THS "C5'" "C4'" SING N N 8 THS "C5'" "H5'1" SING N N 9 THS "C5'" "H5'2" SING N N 10 THS "C4'" "O4'" SING N N 11 THS "C4'" "C3'" SING N N 12 THS "C4'" "H4'" SING N N 13 THS "O4'" "C1'" SING N N 14 THS "C3'" "O3'" SING N N 15 THS "C3'" "C2'" SING N N 16 THS "C3'" "H3'" SING N N 17 THS "O3'" "HO3'" SING N N 18 THS "C2'" "C1'" SING N N 19 THS "C2'" "H2'1" SING N N 20 THS "C2'" "H2'2" SING N N 21 THS "C1'" N1 SING N N 22 THS "C1'" "H1'" SING N N 23 THS N1 C2 SING N N 24 THS N1 C6 SING N N 25 THS C2 O2 DOUB N N 26 THS C2 N3 SING N N 27 THS N3 C4 SING N N 28 THS N3 HN3 SING N N 29 THS C4 O4 DOUB N N 30 THS C4 C5 SING N N 31 THS C5 C5M SING N N 32 THS C5 C6 DOUB N N 33 THS C5M HM51 SING N N 34 THS C5M HM52 SING N N 35 THS C5M HM53 SING N N 36 THS C6 H6 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THS SMILES ACDLabs 10.04 "O=P(S)(S)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2O" THS SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](S)(S)=O)O2)C(=O)NC1=O" THS SMILES CACTVS 3.341 "CC1=CN([CH]2C[CH](O)[CH](CO[P](S)(S)=O)O2)C(=O)NC1=O" THS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(S)S)O" THS SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(S)S)O" THS InChI InChI 1.03 "InChI=1S/C10H15N2O6PS2/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(18-8)4-17-19(16,20)21/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,20,21)/t6-,7+,8+/m0/s1" THS InChIKey InChI 1.03 KMPXQZWMYQHTNT-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THS "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(dithiophosphono)]thymidine" THS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-5-(bis-sulfanylphosphoryloxymethyl)-4-hydroxy-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site THS "Create component" 1999-07-08 EBI THS "Modify descriptor" 2011-06-04 RCSB #