data_THU # _chem_comp.id THU _chem_comp.name TETRAHYDRODEOXYURIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-08-24 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code THU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UX0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal THU N1 N1 N 0 1 N N N 22.548 52.546 57.294 -0.908 -0.034 -0.023 N1 THU 1 THU C2 C2 C 0 1 N N N 21.791 51.429 57.331 -1.833 -0.988 -0.217 C2 THU 2 THU O2 O2 O 0 1 N N N 21.826 50.614 56.417 -1.473 -2.114 -0.498 O2 THU 3 THU N3 N3 N 0 1 N N N 20.995 51.217 58.406 -3.146 -0.729 -0.097 N3 THU 4 THU C4 C4 C 0 1 N N N 20.920 52.155 59.524 -3.598 0.536 -0.027 C4 THU 5 THU O4 O4 O 0 1 N N N 19.632 52.740 59.694 -4.777 0.749 0.157 O4 THU 6 THU C5 C5 C 0 1 N N N 21.942 53.326 59.486 -2.637 1.689 -0.176 C5 THU 7 THU C6 C6 C 0 1 N N N 22.236 53.704 58.022 -1.289 1.303 0.437 C6 THU 8 THU "C1'" C1* C 0 1 N N R 22.905 53.068 55.783 0.503 -0.333 -0.281 "C1'" THU 9 THU "C2'" C2* C 0 1 N N N 22.331 53.372 54.434 1.001 -1.444 0.678 "C2'" THU 10 THU "C3'" C3* C 0 1 N N S 23.556 53.813 53.732 2.526 -1.147 0.706 "C3'" THU 11 THU "O3'" O3* O 0 1 N N N 23.896 52.952 52.684 3.183 -1.758 -0.407 "O3'" THU 12 THU "C4'" C4* C 0 1 N N R 24.701 53.895 54.747 2.562 0.392 0.588 "C4'" THU 13 THU "O4'" O4* O 0 1 N N N 24.298 53.277 55.964 1.318 0.812 0.016 "O4'" THU 14 THU "C5'" C5* C 0 1 N N N 25.231 55.279 54.957 3.720 0.816 -0.317 "C5'" THU 15 THU "O5'" O5* O 0 1 N N N 24.124 56.081 55.381 3.813 2.242 -0.335 "O5'" THU 16 THU HN3 HN3 H 0 1 N N N 20.438 50.387 58.436 -3.777 -1.465 -0.065 HN3 THU 17 THU H51 1H5 H 0 1 N N N 21.522 54.196 60.012 -3.035 2.563 0.340 H51 THU 18 THU H52 2H5 H 0 1 N N N 22.875 53.014 59.979 -2.505 1.918 -1.233 H52 THU 19 THU H61 1H6 H 0 1 N N N 23.087 54.400 57.987 -1.371 1.303 1.524 H61 THU 20 THU H62 2H6 H 0 1 N N N 21.350 54.186 57.583 -0.531 2.023 0.130 H62 THU 21 THU "H1'" H1* H 0 1 N N N 21.884 52.983 55.382 0.642 -0.638 -1.318 "H1'" THU 22 THU "H2'1" 1H2* H 0 0 N N N 21.861 52.496 53.963 0.561 -1.334 1.669 "H2'1" THU 23 THU "H2'2" 2H2* H 0 0 N N N 21.511 54.105 54.436 0.801 -2.434 0.269 "H2'2" THU 24 THU "H3'" H3* H 0 1 N N N 23.370 54.801 53.287 2.967 -1.475 1.647 "H3'" THU 25 THU "HO3'" *HO3 H 0 0 N N N 23.973 53.449 51.878 3.047 -2.711 -0.322 "HO3'" THU 26 THU "H4'" H4* H 0 1 N N N 25.555 53.343 54.327 2.683 0.837 1.576 "H4'" THU 27 THU "H5'1" 1H5* H 0 0 N N N 26.019 55.276 55.724 3.543 0.451 -1.329 "H5'1" THU 28 THU "H5'2" 2H5* H 0 0 N N N 25.676 55.676 54.033 4.651 0.396 0.063 "H5'2" THU 29 THU "HO5'" *HO5 H 0 0 N N N 24.199 56.259 56.311 4.553 2.466 -0.916 "HO5'" THU 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal THU N1 C2 SING N N 1 THU N1 C6 SING N N 2 THU N1 "C1'" SING N N 3 THU C2 O2 DOUB N N 4 THU C2 N3 SING N N 5 THU N3 C4 SING N N 6 THU N3 HN3 SING N N 7 THU C4 O4 DOUB N N 8 THU C4 C5 SING N N 9 THU C5 C6 SING N N 10 THU C5 H51 SING N N 11 THU C5 H52 SING N N 12 THU C6 H61 SING N N 13 THU C6 H62 SING N N 14 THU "C1'" "C2'" SING N N 15 THU "C1'" "O4'" SING N N 16 THU "C1'" "H1'" SING N N 17 THU "C2'" "C3'" SING N N 18 THU "C2'" "H2'1" SING N N 19 THU "C2'" "H2'2" SING N N 20 THU "C3'" "O3'" SING N N 21 THU "C3'" "C4'" SING N N 22 THU "C3'" "H3'" SING N N 23 THU "O3'" "HO3'" SING N N 24 THU "C4'" "O4'" SING N N 25 THU "C4'" "C5'" SING N N 26 THU "C4'" "H4'" SING N N 27 THU "C5'" "O5'" SING N N 28 THU "C5'" "H5'1" SING N N 29 THU "C5'" "H5'2" SING N N 30 THU "O5'" "HO5'" SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor THU SMILES ACDLabs 10.04 "O=C1N(CCC(=O)N1)C2OC(C(O)C2)CO" THU SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2CCC(=O)NC2=O" THU SMILES CACTVS 3.341 "OC[CH]1O[CH](C[CH]1O)N2CCC(=O)NC2=O" THU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1CN(C(=O)NC1=O)C2C[C@@H]([C@H](O2)CO)O" THU SMILES "OpenEye OEToolkits" 1.5.0 "C1CN(C(=O)NC1=O)C2CC(C(O2)CO)O" THU InChI InChI 1.03 "InChI=1S/C9H14N2O5/c12-4-6-5(13)3-8(16-6)11-2-1-7(14)10-9(11)15/h5-6,8,12-13H,1-4H2,(H,10,14,15)/t5-,6+,8?/m0/s1" THU InChIKey InChI 1.03 XMJRLEURHMTTRX-FWHJPCMOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier THU "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyuridine" THU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1,3-diazinane-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site THU "Create component" 2001-08-24 EBI THU "Modify descriptor" 2011-06-04 RCSB #