data_TJI # _chem_comp.id TJI _chem_comp.name "ethyl 3-bromanyl-2-methyl-propanoate" _chem_comp.type "peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 Br O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Ethyl 2-(bromomethyl)acrylate (precursor)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 195.054 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TJI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C2F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TJI C1 C1 C 0 1 N N N N N N 25.259 21.354 -0.616 5.087 -0.646 -0.314 C1 TJI 1 TJI C2 C2 C 0 1 N N N N N N 24.251 21.843 -1.598 3.944 0.322 -0.001 C2 TJI 2 TJI O1 O1 O 0 1 N N N N N N 23.752 20.746 -2.419 2.672 -0.346 -0.215 O1 TJI 3 TJI C3 C3 C 0 1 N N N N N N 23.291 21.087 -3.611 1.561 0.371 0.017 C3 TJI 4 TJI O2 O2 O 0 1 N N N N N N 23.236 22.220 -4.023 1.648 1.518 0.387 O2 TJI 5 TJI C4 C4 C 0 1 N N R N N N 22.974 19.908 -4.493 0.206 -0.255 -0.184 C4 TJI 6 TJI C5 C5 C 0 1 N N N N N N 21.555 19.901 -4.950 -0.883 0.768 0.147 C5 TJI 7 TJI C6 C6 C 0 1 N N N N N N 23.497 18.570 -4.024 0.062 -1.468 0.738 C6 TJI 8 TJI H1 H1 H 0 1 N N N N N N 25.620 22.198 -0.009 5.018 -1.514 0.342 H1 TJI 9 TJI H2 H2 H 0 1 N N N N N N 24.797 20.602 0.040 5.016 -0.968 -1.353 H2 TJI 10 TJI H3 H3 H 0 1 N N N N N N 26.105 20.901 -1.154 6.042 -0.145 -0.153 H3 TJI 11 TJI H4 H4 H 0 1 N N N N N N 24.718 22.597 -2.249 4.015 0.644 1.038 H4 TJI 12 TJI H5 H5 H 0 1 N N N N N N 23.410 22.298 -1.055 4.014 1.190 -0.656 H5 TJI 13 TJI H6 H6 H 0 1 N N N N N N 23.547 20.106 -5.411 0.102 -0.573 -1.221 H6 TJI 14 TJI H7 H7 H 0 1 N N N N N N 21.143 20.845 -4.563 -0.779 1.086 1.185 H7 TJI 15 TJI H8 H8 H 0 1 N N N N N N 21.625 19.954 -6.046 -0.781 1.632 -0.509 H8 TJI 16 TJI H10 H10 H 0 1 N N N N N N 24.546 18.676 -3.709 -0.919 -1.921 0.593 H10 TJI 17 TJI H11 H11 H 0 1 N N N N N N 22.893 18.217 -3.175 0.838 -2.197 0.502 H11 TJI 18 TJI H12 H12 H 0 1 N N N N N N 23.433 17.843 -4.847 0.166 -1.150 1.776 H12 TJI 19 TJI BR1 BR1 BR 0 0 N Y N N N N ? ? ? -2.652 -0.049 -0.115 BR1 TJI 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TJI C5 C4 SING N N 1 TJI C4 C6 SING N N 2 TJI C4 C3 SING N N 3 TJI O2 C3 DOUB N N 4 TJI C3 O1 SING N N 5 TJI O1 C2 SING N N 6 TJI C2 C1 SING N N 7 TJI C1 H1 SING N N 8 TJI C1 H2 SING N N 9 TJI C1 H3 SING N N 10 TJI C2 H4 SING N N 11 TJI C2 H5 SING N N 12 TJI C4 H6 SING N N 13 TJI C5 H7 SING N N 14 TJI C5 H8 SING N N 15 TJI C6 H10 SING N N 16 TJI C6 H11 SING N N 17 TJI C6 H12 SING N N 18 TJI C5 BR1 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TJI InChI InChI 1.06 "InChI=1S/C6H11BrO2/c1-3-9-6(8)5(2)4-7/h5H,3-4H2,1-2H3/t5-/m0/s1" TJI InChIKey InChI 1.06 VTORDCJYLAYUQF-YFKPBYRVSA-N TJI SMILES_CANONICAL CACTVS 3.385 "CCOC(=O)[C@@H](C)CBr" TJI SMILES CACTVS 3.385 "CCOC(=O)[CH](C)CBr" TJI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C(C)CBr" TJI SMILES "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C(C)CBr" # _pdbx_chem_comp_identifier.comp_id TJI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "ethyl 3-bromanyl-2-methyl-propanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TJI "Create component" 2023-01-06 PDBE TJI "Modify leaving atom flag" 2023-01-12 PDBE TJI "Initial release" 2023-11-01 RCSB TJI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TJI _pdbx_chem_comp_synonyms.name "Ethyl 2-(bromomethyl)acrylate (precursor)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 TJI CYS None Crosslinker "Amino-acid side chain" "Any position" C5 SG ? ? 2 TJI CYS None Crosslinker "Amino-acid side chain" "Any position" C6 SG ? ? 3 TJI LYS None Crosslinker "Amino-acid side chain" "Any position" C5 NZ ? ? 4 TJI LYS None Crosslinker "Amino-acid side chain" "Any position" C6 NZ ? ? #