data_TJU # _chem_comp.id TJU _chem_comp.name "[(2~{R},3~{S},5~{R})-5-(4-azanyl-3-methyl-6-oxidanylidene-2~{H}-1,3,5-triazin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphite" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H17 N4 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-06 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TJU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C57 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TJU C2 C1 C 0 1 N N N N N N 24.678 19.381 47.867 2.431 -0.071 0.983 C2 TJU 1 TJU C4 C2 C 0 1 N N N N N N 26.618 20.590 48.280 4.356 1.127 0.511 C4 TJU 2 TJU C5 C3 C 0 1 N N N N N N 28.690 20.228 46.888 4.663 1.814 -1.841 C5 TJU 3 TJU C6 C4 C 0 1 N N N N N N 26.848 18.573 46.972 3.462 -0.352 -1.205 C6 TJU 4 TJU O2 O1 O 0 1 N N N N N N 23.517 19.126 48.138 1.541 -0.319 1.777 O2 TJU 5 TJU N3 N1 N 0 1 N N N N N N 25.374 20.328 48.603 3.476 0.660 1.381 N3 TJU 6 TJU N4 N2 N 0 1 N N N N N N 27.241 21.579 48.989 5.435 1.845 0.937 N4 TJU 7 TJU N5 N3 N 0 1 N N N N N N 27.403 19.814 47.458 4.171 0.881 -0.824 N5 TJU 8 TJU N1 N4 N 0 1 N N N N N N 25.387 18.705 46.838 2.342 -0.542 -0.274 N1 TJU 9 TJU "C1'" C5 C 0 1 N N R N N N 24.673 17.631 46.129 1.133 -1.244 -0.713 "C1'" TJU 10 TJU "O4'" O2 O 0 1 N N N N N N 24.683 16.519 47.038 -0.037 -0.436 -0.459 "O4'" TJU 11 TJU "C2'" C6 C 0 1 N N N N N N 25.303 17.174 44.833 0.919 -2.523 0.127 "C2'" TJU 12 TJU "C3'" C7 C 0 1 N N S N N N 25.844 15.785 45.159 -0.614 -2.603 0.305 "C3'" TJU 13 TJU "O3'" O3 O 0 1 N N N N N N 25.627 14.872 44.063 -1.124 -3.801 -0.282 "O3'" TJU 14 TJU "C4'" C8 C 0 1 N N R N N N 24.889 15.342 46.268 -1.144 -1.363 -0.448 "C4'" TJU 15 TJU "C5'" C9 C 0 1 N N N N N N 25.534 14.359 47.189 -2.337 -0.758 0.295 "C5'" TJU 16 TJU "O5'" O4 O 0 1 N N N N N N 24.477 13.924 48.079 -2.885 0.314 -0.475 "O5'" TJU 17 TJU P P1 P 0 1 N N N N N N 24.884 13.167 49.506 -4.155 1.179 0.006 P TJU 18 TJU OP2 O5 O 0 1 N N N N N N 26.253 13.514 49.892 -4.413 2.378 -1.038 OP2 TJU 19 TJU OP1 O6 O 0 1 N N N N N N 23.764 13.426 50.436 -5.456 0.233 0.070 OP1 TJU 20 TJU H1 H1 H 0 1 N N N N N N 29.001 21.182 47.338 3.890 2.550 -2.063 H1 TJU 21 TJU H2 H2 H 0 1 N N N N N N 29.448 19.459 47.098 5.552 2.321 -1.468 H2 TJU 22 TJU H3 H3 H 0 1 N N N N N N 28.586 20.353 45.800 4.912 1.263 -2.748 H3 TJU 23 TJU H4 H4 H 0 1 N N N N N N 27.079 17.765 47.682 3.080 -0.257 -2.222 H4 TJU 24 TJU H5 H5 H 0 1 N N N N N N 27.286 18.335 45.991 4.143 -1.201 -1.146 H5 TJU 25 TJU H6 H6 H 0 1 N N N N N N 26.748 22.062 49.713 5.560 2.016 1.884 H6 TJU 26 TJU H7 H7 H 0 1 N N N N N N 28.190 21.819 48.784 6.076 2.185 0.294 H7 TJU 27 TJU H8 H8 H 0 1 N N N N N N 23.638 17.946 45.932 1.202 -1.490 -1.772 H8 TJU 28 TJU H9 H9 H 0 1 N N N N N N 26.117 17.851 44.533 1.287 -3.398 -0.409 H9 TJU 29 TJU H10 H10 H 0 1 N N N N N N 24.553 17.124 44.030 1.412 -2.431 1.095 H10 TJU 30 TJU H11 H11 H 0 1 N N N N N N 26.889 15.817 45.502 -0.879 -2.551 1.361 H11 TJU 31 TJU H12 H12 H 0 1 N N N N N N 25.972 14.016 44.290 -0.776 -4.612 0.113 H12 TJU 32 TJU H13 H13 H 0 1 N N N N N N 23.954 14.944 45.846 -1.426 -1.629 -1.467 H13 TJU 33 TJU H14 H14 H 0 1 N N N N N N 25.937 13.506 46.623 -3.098 -1.524 0.444 H14 TJU 34 TJU H15 H15 H 0 1 N N N N N N 26.345 14.838 47.758 -2.008 -0.380 1.263 H15 TJU 35 TJU H16 H16 H 0 1 N N N N N N 26.809 12.747 49.814 -5.165 2.942 -0.810 H16 TJU 36 TJU H17 H17 H 0 1 N N N N N N 23.284 12.620 50.587 -5.690 -0.171 -0.777 H17 TJU 37 TJU O1 O7 O 0 1 N Y N N N N 24.866 11.622 49.102 -3.888 1.743 1.348 O1 TJU 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TJU "O3'" "C3'" SING N N 1 TJU "C2'" "C3'" SING N N 2 TJU "C2'" "C1'" SING N N 3 TJU "C3'" "C4'" SING N N 4 TJU "C1'" N1 SING N N 5 TJU "C1'" "O4'" SING N N 6 TJU "C4'" "O4'" SING N N 7 TJU "C4'" "C5'" SING N N 8 TJU N1 C6 SING N N 9 TJU N1 C2 SING N N 10 TJU C5 N5 SING N N 11 TJU C6 N5 SING N N 12 TJU "C5'" "O5'" SING N N 13 TJU N5 C4 SING N N 14 TJU C2 O2 DOUB N N 15 TJU C2 N3 SING N N 16 TJU "O5'" P SING N N 17 TJU C4 N3 DOUB N N 18 TJU C4 N4 SING N N 19 TJU P OP2 SING N N 20 TJU P OP1 SING N N 21 TJU C5 H1 SING N N 22 TJU C5 H2 SING N N 23 TJU C5 H3 SING N N 24 TJU C6 H4 SING N N 25 TJU C6 H5 SING N N 26 TJU N4 H6 SING N N 27 TJU N4 H7 SING N N 28 TJU "C1'" H8 SING N N 29 TJU "C2'" H9 SING N N 30 TJU "C2'" H10 SING N N 31 TJU "C3'" H11 SING N N 32 TJU "O3'" H12 SING N N 33 TJU "C4'" H13 SING N N 34 TJU "C5'" H14 SING N N 35 TJU "C5'" H15 SING N N 36 TJU OP2 H16 SING N N 37 TJU OP1 H17 SING N N 38 TJU P O1 DOUB N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TJU InChI InChI 1.06 "InChI=1S/C9H17N4O7P/c1-12-4-13(9(15)11-8(12)10)7-2-5(14)6(20-7)3-19-21(16,17)18/h5-7,14H,2-4H2,1H3,(H2,10,11,15)(H2,16,17,18)/t5-,6+,7+/m0/s1" TJU InChIKey InChI 1.06 DIYNYEYZCDSJGH-RRKCRQDMSA-N TJU SMILES_CANONICAL CACTVS 3.385 "CN1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N" TJU SMILES CACTVS 3.385 "CN1CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N" TJU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CN(C(=O)N=C1N)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O" TJU SMILES "OpenEye OEToolkits" 2.0.7 "CN1CN(C(=O)N=C1N)C2CC(C(O2)COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id TJU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},5~{R})-5-(4-azanyl-3-methyl-6-oxidanylidene-2~{H}-1,3,5-triazin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TJU "Create component" 2023-01-06 PDBE TJU "Initial release" 2024-01-17 RCSB #