data_TK1 # _chem_comp.id TK1 _chem_comp.name "1-({5-[4-(methylsulfonyl)phenoxy]-2-pyridin-2-yl-1H-benzimidazol-6-yl}methyl)pyrrolidine-2,5-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H20 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-04-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.504 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TK1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3H1V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TK1 C1 C1 C 0 1 N N N 44.965 21.148 68.367 -6.589 -2.351 0.709 C1 TK1 1 TK1 C2 C2 C 0 1 Y N N 34.490 21.352 60.295 5.726 -4.311 0.640 C2 TK1 2 TK1 C3 C3 C 0 1 Y N N 34.895 21.071 59.012 7.017 -3.805 0.609 C3 TK1 3 TK1 C4 C4 C 0 1 Y N N 35.129 20.772 61.363 4.672 -3.447 0.395 C4 TK1 4 TK1 C5 C5 C 0 1 Y N N 41.839 18.830 66.506 -2.327 -0.177 0.645 C5 TK1 5 TK1 C6 C6 C 0 1 Y N N 41.383 17.843 68.661 -2.953 -0.344 -1.668 C6 TK1 6 TK1 C7 C7 C 0 1 Y N N 43.061 19.201 66.944 -3.180 -1.220 0.949 C7 TK1 7 TK1 C8 C8 C 0 1 Y N N 42.631 18.209 69.115 -3.805 -1.387 -1.359 C8 TK1 8 TK1 C9 C9 C 0 1 Y N N 35.959 20.209 58.850 7.215 -2.463 0.335 C9 TK1 9 TK1 C10 C10 C 0 1 Y N N 39.528 17.056 63.380 2.208 1.942 -0.892 C10 TK1 10 TK1 C11 C11 C 0 1 Y N N 38.376 18.731 65.385 0.434 -0.183 -0.546 C11 TK1 11 TK1 C12 C12 C 0 1 N N N 41.795 12.990 62.805 -0.161 5.416 1.847 C12 TK1 12 TK1 C13 C13 C 0 1 N N N 40.957 12.334 63.923 -1.565 4.820 1.617 C13 TK1 13 TK1 C14 C14 C 0 1 N N N 41.036 15.954 64.986 0.321 3.514 -1.338 C14 TK1 14 TK1 C15 C15 C 0 1 Y N N 41.014 18.160 67.376 -2.212 0.265 -0.665 C15 TK1 15 TK1 C16 C16 C 0 1 Y N N 43.423 18.890 68.224 -3.919 -1.824 -0.052 C16 TK1 16 TK1 C17 C17 C 0 1 Y N N 36.192 19.923 61.100 4.944 -2.106 0.127 C17 TK1 17 TK1 C18 C18 C 0 1 Y N N 39.959 16.973 64.687 0.850 2.141 -1.015 C18 TK1 18 TK1 C19 C19 C 0 1 Y N N 38.538 18.001 63.103 2.699 0.678 -0.595 C19 TK1 19 TK1 C20 C20 C 0 1 Y N N 37.943 18.837 64.047 1.811 -0.398 -0.419 C20 TK1 20 TK1 C21 C21 C 0 1 Y N N 39.400 17.814 65.654 -0.036 1.080 -0.842 C21 TK1 21 TK1 C22 C22 C 0 1 Y N N 36.980 19.311 62.152 3.828 -1.170 -0.137 C22 TK1 22 TK1 C23 C23 C 0 1 N N N 41.767 14.482 63.098 0.637 4.909 0.666 C23 TK1 23 TK1 C24 C24 C 0 1 N N N 40.539 13.548 64.756 -1.412 4.039 0.330 C24 TK1 24 TK1 N25 N25 N 0 1 Y N N 37.924 18.321 61.909 3.968 0.163 -0.411 N25 TK1 25 TK1 N26 N26 N 0 1 Y N N 36.629 19.654 59.866 6.195 -1.663 0.106 N26 TK1 26 TK1 N27 N27 N 0 1 Y N N 36.965 19.631 63.431 2.559 -1.493 -0.143 N27 TK1 27 TK1 N28 N28 N 0 1 N N N 40.964 14.714 64.188 -0.153 4.156 -0.109 N28 TK1 28 TK1 O29 O29 O 0 1 N N N 42.372 15.341 62.467 1.807 5.146 0.456 O29 TK1 29 TK1 O30 O30 O 0 1 N N N 39.980 13.535 65.821 -2.290 3.406 -0.216 O30 TK1 30 TK1 O31 O31 O 0 1 N N N 45.019 19.114 70.174 -4.450 -3.728 1.514 O31 TK1 31 TK1 O32 O32 O 0 1 N N N 46.024 18.840 67.838 -5.095 -3.900 -0.868 O32 TK1 32 TK1 O33 O33 O 0 1 N N N 39.784 17.727 66.969 -1.373 1.291 -0.966 O33 TK1 33 TK1 S34 S34 S 0 1 N N N 45.018 19.399 68.735 -5.006 -3.155 0.338 S34 TK1 34 TK1 H1 H1 H 0 1 N N N 44.954 21.721 69.306 -6.927 -1.793 -0.164 H1 TK1 35 TK1 H1A H1A H 0 1 N N N 45.852 21.426 67.779 -7.330 -3.109 0.965 H1A TK1 36 TK1 H1B H1B H 0 1 N N N 44.056 21.374 67.790 -6.463 -1.669 1.550 H1B TK1 37 TK1 H2 H2 H 0 1 N N N 33.667 22.031 60.464 5.547 -5.356 0.847 H2 TK1 38 TK1 H3 H3 H 0 1 N N N 34.397 21.510 58.160 7.861 -4.453 0.795 H3 TK1 39 TK1 H4 H4 H 0 1 N N N 34.813 20.971 62.376 3.654 -3.807 0.412 H4 TK1 40 TK1 H5 H5 H 0 1 N N N 41.519 19.054 65.499 -1.754 0.298 1.428 H5 TK1 41 TK1 H6 H6 H 0 1 N N N 40.701 17.312 69.309 -2.865 -0.002 -2.688 H6 TK1 42 TK1 H7 H7 H 0 1 N N N 43.740 19.734 66.294 -3.270 -1.564 1.968 H7 TK1 43 TK1 H8 H8 H 0 1 N N N 42.967 17.974 70.114 -4.383 -1.860 -2.139 H8 TK1 44 TK1 H9 H9 H 0 1 N N N 36.270 19.968 57.844 8.219 -2.067 0.310 H9 TK1 45 TK1 H10 H10 H 0 1 N N N 39.936 16.421 62.608 2.890 2.768 -1.032 H10 TK1 46 TK1 H11 H11 H 0 1 N N N 37.937 19.331 66.168 -0.257 -1.002 -0.413 H11 TK1 47 TK1 H12 H12 H 0 1 N N N 42.827 12.609 62.815 -0.201 6.505 1.844 H12 TK1 48 TK1 H12A H12A H 0 0 N N N 41.389 12.764 61.808 0.262 5.050 2.783 H12A TK1 49 TK1 H13 H13 H 0 1 N N N 40.090 11.788 63.524 -1.840 4.158 2.438 H13 TK1 50 TK1 H13A H13A H 0 0 N N N 41.505 11.572 64.497 -2.303 5.613 1.499 H13A TK1 51 TK1 H14 H14 H 0 1 N N N 42.008 16.426 64.781 1.116 4.116 -1.779 H14 TK1 52 TK1 H14A H14A H 0 0 N N N 40.897 15.655 66.035 -0.504 3.428 -2.045 H14A TK1 53 TK1 HN25 HN25 H 0 0 N N N 38.125 17.910 61.020 4.803 0.655 -0.467 HN25 TK1 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TK1 C1 S34 SING N N 1 TK1 C2 C3 DOUB Y N 2 TK1 C2 C4 SING Y N 3 TK1 C3 C9 SING Y N 4 TK1 C4 C17 DOUB Y N 5 TK1 C5 C7 DOUB Y N 6 TK1 C5 C15 SING Y N 7 TK1 C6 C8 SING Y N 8 TK1 C6 C15 DOUB Y N 9 TK1 C7 C16 SING Y N 10 TK1 C8 C16 DOUB Y N 11 TK1 C9 N26 DOUB Y N 12 TK1 C10 C18 DOUB Y N 13 TK1 C10 C19 SING Y N 14 TK1 C11 C20 SING Y N 15 TK1 C11 C21 DOUB Y N 16 TK1 C12 C13 SING N N 17 TK1 C12 C23 SING N N 18 TK1 C13 C24 SING N N 19 TK1 C14 C18 SING N N 20 TK1 C14 N28 SING N N 21 TK1 C15 O33 SING N N 22 TK1 C16 S34 SING N N 23 TK1 C17 C22 SING Y N 24 TK1 C17 N26 SING Y N 25 TK1 C18 C21 SING Y N 26 TK1 C19 C20 DOUB Y N 27 TK1 C19 N25 SING Y N 28 TK1 C20 N27 SING Y N 29 TK1 C21 O33 SING N N 30 TK1 C22 N25 SING Y N 31 TK1 C22 N27 DOUB Y N 32 TK1 C23 N28 SING N N 33 TK1 C23 O29 DOUB N N 34 TK1 C24 N28 SING N N 35 TK1 C24 O30 DOUB N N 36 TK1 O31 S34 DOUB N N 37 TK1 O32 S34 DOUB N N 38 TK1 C1 H1 SING N N 39 TK1 C1 H1A SING N N 40 TK1 C1 H1B SING N N 41 TK1 C2 H2 SING N N 42 TK1 C3 H3 SING N N 43 TK1 C4 H4 SING N N 44 TK1 C5 H5 SING N N 45 TK1 C6 H6 SING N N 46 TK1 C7 H7 SING N N 47 TK1 C8 H8 SING N N 48 TK1 C9 H9 SING N N 49 TK1 C10 H10 SING N N 50 TK1 C11 H11 SING N N 51 TK1 C12 H12 SING N N 52 TK1 C12 H12A SING N N 53 TK1 C13 H13 SING N N 54 TK1 C13 H13A SING N N 55 TK1 C14 H14 SING N N 56 TK1 C14 H14A SING N N 57 TK1 N25 HN25 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TK1 SMILES ACDLabs 10.04 "O=S(=O)(c5ccc(Oc3c(cc1c(nc(n1)c2ncccc2)c3)CN4C(=O)CCC4=O)cc5)C" TK1 SMILES_CANONICAL CACTVS 3.341 "C[S](=O)(=O)c1ccc(Oc2cc3nc([nH]c3cc2CN4C(=O)CCC4=O)c5ccccn5)cc1" TK1 SMILES CACTVS 3.341 "C[S](=O)(=O)c1ccc(Oc2cc3nc([nH]c3cc2CN4C(=O)CCC4=O)c5ccccn5)cc1" TK1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CS(=O)(=O)c1ccc(cc1)Oc2cc3c(cc2CN4C(=O)CCC4=O)[nH]c(n3)c5ccccn5" TK1 SMILES "OpenEye OEToolkits" 1.5.0 "CS(=O)(=O)c1ccc(cc1)Oc2cc3c(cc2CN4C(=O)CCC4=O)[nH]c(n3)c5ccccn5" TK1 InChI InChI 1.03 "InChI=1S/C24H20N4O5S/c1-34(31,32)17-7-5-16(6-8-17)33-21-13-20-19(26-24(27-20)18-4-2-3-11-25-18)12-15(21)14-28-22(29)9-10-23(28)30/h2-8,11-13H,9-10,14H2,1H3,(H,26,27)" TK1 InChIKey InChI 1.03 IPZLCOKXDRIZBC-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TK1 "SYSTEMATIC NAME" ACDLabs 10.04 "1-({5-[4-(methylsulfonyl)phenoxy]-2-pyridin-2-yl-1H-benzimidazol-6-yl}methyl)pyrrolidine-2,5-dione" TK1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[[6-(4-methylsulfonylphenoxy)-2-pyridin-2-yl-3H-benzimidazol-5-yl]methyl]pyrrolidine-2,5-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TK1 "Create component" 2009-04-21 PDBJ TK1 "Modify aromatic_flag" 2011-06-04 RCSB TK1 "Modify descriptor" 2011-06-04 RCSB #