data_TK3
#
_chem_comp.id TK3
_chem_comp.name "(1R,3R,7E,17beta)-17-{(2R,6R)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H52 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-07
_chem_comp.pdbx_modified_date 2013-06-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 532.796
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TK3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VTC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TK3 C29 C29 C 0 1 N N N 3.685 -1.156 35.447 -6.464 -1.084 0.029 C29 TK3 1
TK3 C30 C30 C 0 1 N N N 2.359 -1.219 36.303 -7.548 -0.875 1.088 C30 TK3 2
TK3 C31 C31 C 0 1 N N N 1.313 -0.188 35.747 -8.867 -1.471 0.592 C31 TK3 3
TK3 C32 C32 C 0 1 N N N 1.906 1.264 35.839 -9.283 -0.778 -0.707 C32 TK3 4
TK3 C33 C33 C 0 1 N N N 3.219 1.349 34.982 -8.199 -0.987 -1.766 C33 TK3 5
TK3 C34 C34 C 0 1 N N N 4.260 0.318 35.522 -6.880 -0.392 -1.270 C34 TK3 6
TK3 C37 C37 C 0 1 N N N 3.332 -1.472 33.944 -6.282 -2.582 -0.227 C37 TK3 7
TK3 C36 C36 C 0 1 N N N 0.988 -0.525 34.249 -8.686 -2.969 0.336 C36 TK3 8
TK3 C38 C38 C 0 1 N N N 2.901 1.013 33.488 -8.018 -2.485 -2.022 C38 TK3 9
TK3 C35 C35 C 0 1 N N N 2.295 -0.433 33.393 -7.602 -3.178 -0.723 C35 TK3 10
TK3 C26 C26 C 0 1 N N N 4.744 -2.222 35.885 -5.144 -0.488 0.525 C26 TK3 11
TK3 C25 C25 C 0 1 N N R 4.983 -2.521 37.401 -5.282 1.031 0.638 C25 TK3 12
TK3 C24 C24 C 0 1 N N N 5.730 -1.416 38.003 -3.972 1.620 0.960 C24 TK3 13
TK3 C23 C23 C 0 1 N N N 6.304 -0.477 38.443 -2.927 2.089 1.217 C23 TK3 14
TK3 C22 C22 C 0 1 N N N 6.973 0.724 38.933 -1.617 2.677 1.540 C22 TK3 15
TK3 C20 C20 C 0 1 N N R 6.674 1.982 38.058 -0.618 2.337 0.432 C20 TK3 16
TK3 C17 C17 C 0 1 N N R 7.762 3.110 38.212 0.772 2.841 0.825 C17 TK3 17
TK3 C21 C21 C 0 1 N N N 5.241 2.431 38.453 -1.054 3.009 -0.872 C21 TK3 18
TK3 O03 O03 O 0 1 N N N 5.739 -3.702 37.544 -6.215 1.349 1.673 O03 TK3 19
TK3 C13 C13 C 0 1 N N R 7.667 4.394 37.316 1.788 2.481 -0.248 C13 TK3 20
TK3 C14 C14 C 0 1 N N S 9.090 4.977 37.590 3.105 2.293 0.558 C14 TK3 21
TK3 C15 C15 C 0 1 N N N 10.028 3.781 37.385 2.617 1.444 1.734 C15 TK3 22
TK3 C16 C16 C 0 1 N N N 9.227 2.606 37.971 1.264 2.119 2.107 C16 TK3 23
TK3 C12 C12 C 0 1 N N N 6.646 5.480 37.809 2.061 3.486 -1.343 C12 TK3 24
TK3 C11 C11 C 0 1 N N N 6.842 6.863 37.127 3.030 2.831 -2.342 C11 TK3 25
TK3 C09 C09 C 0 1 N N N 8.311 7.343 37.202 4.339 2.415 -1.673 C09 TK3 26
TK3 C08 C08 C 0 1 N N N 9.307 6.264 36.757 4.070 1.652 -0.394 C08 TK3 27
TK3 C18 C18 C 0 1 N N N 7.412 4.016 35.799 1.396 1.148 -0.888 C18 TK3 28
TK3 C07 C07 C 0 1 N N N 10.250 6.379 35.806 4.642 0.482 -0.131 C07 TK3 29
TK3 C06 C06 C 0 1 N N N 10.544 7.557 34.981 5.574 -0.116 -1.099 C06 TK3 30
TK3 C05 C05 C 0 1 N N N 11.088 7.577 33.759 6.224 -1.233 -0.792 C05 TK3 31
TK3 C04 C04 C 0 1 N N N 11.343 8.904 33.067 7.269 -1.797 -1.727 C04 TK3 32
TK3 C03 C03 C 0 1 N N R 12.699 9.009 32.313 8.582 -1.963 -0.951 C03 TK3 33
TK3 C02 C02 C 0 1 N N N 12.905 7.805 31.397 8.290 -2.693 0.340 C02 TK3 34
TK3 C01 C01 C 0 1 N N R 12.824 6.476 32.162 7.245 -2.129 1.276 C01 TK3 35
TK3 C10 C10 C 0 1 N N N 11.501 6.339 32.950 5.936 -1.960 0.502 C10 TK3 36
TK3 C28 C28 C 0 1 N N N 13.077 7.905 30.063 8.929 -3.796 0.642 C28 TK3 37
TK3 O01 O01 O 0 1 N N N 12.935 5.395 31.250 7.045 -3.028 2.369 O01 TK3 38
TK3 O02 O02 O 0 1 N N N 13.784 9.065 33.249 9.134 -0.677 -0.661 O02 TK3 39
TK3 H1 H1 H 0 1 N N N 1.937 -2.233 36.247 -7.251 -1.369 2.014 H1 TK3 40
TK3 H2 H2 H 0 1 N N N 2.590 -0.975 37.351 -7.677 0.191 1.270 H2 TK3 41
TK3 H3 H3 H 0 1 N N N 0.391 -0.245 36.344 -9.639 -1.322 1.347 H3 TK3 42
TK3 H4 H4 H 0 1 N N N 2.137 1.500 36.888 -10.223 -1.203 -1.060 H4 TK3 43
TK3 H5 H5 H 0 1 N N N 1.170 1.986 35.455 -9.412 0.288 -0.525 H5 TK3 44
TK3 H6 H6 H 0 1 N N N 3.636 2.364 35.050 -8.495 -0.494 -2.692 H6 TK3 45
TK3 H7 H7 H 0 1 N N N 5.176 0.379 34.915 -7.009 0.675 -1.088 H7 TK3 46
TK3 H8 H8 H 0 1 N N N 4.497 0.560 36.569 -6.107 -0.540 -2.025 H8 TK3 47
TK3 H9 H9 H 0 1 N N N 2.902 -2.482 33.878 -5.510 -2.731 -0.982 H9 TK3 48
TK3 H10 H10 H 0 1 N N N 4.249 -1.424 33.339 -5.986 -3.075 0.699 H10 TK3 49
TK3 H11 H11 H 0 1 N N N 0.248 0.192 33.865 -8.389 -3.462 1.262 H11 TK3 50
TK3 H12 H12 H 0 1 N N N 0.579 -1.544 34.184 -9.625 -3.393 -0.017 H12 TK3 51
TK3 H13 H13 H 0 1 N N N 3.827 1.062 32.896 -8.957 -2.909 -2.375 H13 TK3 52
TK3 H14 H14 H 0 1 N N N 2.176 1.741 33.095 -7.245 -2.634 -2.777 H14 TK3 53
TK3 H15 H15 H 0 1 N N N 2.064 -0.666 32.343 -7.473 -4.245 -0.905 H15 TK3 54
TK3 H16 H16 H 0 1 N N N 4.447 -3.173 35.418 -4.902 -0.905 1.503 H16 TK3 55
TK3 H17 H17 H 0 1 N N N 5.710 -1.897 35.471 -4.349 -0.730 -0.180 H17 TK3 56
TK3 H18 H18 H 0 1 N N N 4.006 -2.624 37.895 -5.639 1.435 -0.309 H18 TK3 57
TK3 H19 H19 H 0 1 N N N 8.059 0.546 38.934 -1.714 3.760 1.620 H19 TK3 58
TK3 H20 H20 H 0 1 N N N 6.633 0.921 39.960 -1.260 2.273 2.487 H20 TK3 59
TK3 H21 H21 H 0 1 N N N 6.658 1.669 37.004 -0.586 1.256 0.291 H21 TK3 60
TK3 H22 H22 H 0 1 N N N 7.714 3.451 39.257 0.753 3.919 0.982 H22 TK3 61
TK3 H23 H23 H 0 1 N N N 4.543 1.592 38.318 -0.343 2.766 -1.661 H23 TK3 62
TK3 H24 H24 H 0 1 N N N 5.234 2.749 39.506 -2.044 2.650 -1.152 H24 TK3 63
TK3 H25 H25 H 0 1 N N N 4.931 3.271 37.814 -1.086 4.089 -0.731 H25 TK3 64
TK3 H26 H26 H 0 1 N N N 5.881 -3.878 38.467 -5.961 1.020 2.546 H26 TK3 65
TK3 H27 H27 H 0 1 N N N 9.132 5.258 38.653 3.487 3.253 0.906 H27 TK3 66
TK3 H28 H28 H 0 1 N N N 10.238 3.622 36.317 2.462 0.410 1.426 H28 TK3 67
TK3 H29 H29 H 0 1 N N N 10.974 3.924 37.928 3.318 1.500 2.567 H29 TK3 68
TK3 H30 H30 H 0 1 N N N 9.223 1.764 37.263 1.414 2.839 2.911 H30 TK3 69
TK3 H31 H31 H 0 1 N N N 9.675 2.283 38.923 0.540 1.363 2.411 H31 TK3 70
TK3 H32 H32 H 0 1 N N N 6.768 5.606 38.895 1.130 3.746 -1.847 H32 TK3 71
TK3 H33 H33 H 0 1 N N N 5.627 5.125 37.593 2.515 4.381 -0.918 H33 TK3 72
TK3 H34 H34 H 0 1 N N N 6.201 7.601 37.631 2.552 1.948 -2.766 H34 TK3 73
TK3 H35 H35 H 0 1 N N N 6.548 6.783 36.070 3.249 3.535 -3.144 H35 TK3 74
TK3 H36 H36 H 0 1 N N N 8.537 7.624 38.241 4.908 1.787 -2.357 H36 TK3 75
TK3 H37 H37 H 0 1 N N N 8.428 8.221 36.550 4.919 3.307 -1.436 H37 TK3 76
TK3 H38 H38 H 0 1 N N N 6.394 3.615 35.687 1.147 0.429 -0.107 H38 TK3 77
TK3 H39 H39 H 0 1 N N N 7.523 4.914 35.174 0.530 1.295 -1.534 H39 TK3 78
TK3 H40 H40 H 0 1 N N N 8.142 3.257 35.483 2.230 0.769 -1.478 H40 TK3 79
TK3 H41 H41 H 0 1 N N N 10.860 5.506 35.629 4.422 -0.029 0.795 H41 TK3 80
TK3 H42 H42 H 0 1 N N N 10.293 8.516 35.409 5.730 0.354 -2.059 H42 TK3 81
TK3 H43 H43 H 0 1 N N N 11.316 9.696 33.830 6.941 -2.766 -2.102 H43 TK3 82
TK3 H44 H44 H 0 1 N N N 10.535 9.068 32.339 7.419 -1.113 -2.563 H44 TK3 83
TK3 H45 H45 H 0 1 N N N 12.685 9.922 31.699 9.290 -2.539 -1.548 H45 TK3 84
TK3 H46 H46 H 0 1 N N N 13.655 6.442 32.882 7.573 -1.160 1.650 H46 TK3 85
TK3 H47 H47 H 0 1 N N N 10.698 6.120 32.231 5.231 -1.382 1.099 H47 TK3 86
TK3 H48 H48 H 0 1 N N N 11.607 5.496 33.649 5.513 -2.940 0.279 H48 TK3 87
TK3 H49 H49 H 0 1 N N N 13.073 8.876 29.589 8.712 -4.311 1.566 H49 TK3 88
TK3 H50 H50 H 0 1 N N N 13.218 7.014 29.468 9.674 -4.190 -0.034 H50 TK3 89
TK3 H51 H51 H 0 1 N N N 12.885 4.573 31.724 7.840 -3.189 2.895 H51 TK3 90
TK3 H52 H52 H 0 1 N N N 13.667 9.811 33.825 9.967 -0.708 -0.170 H52 TK3 91
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TK3 C28 C02 DOUB N N 1
TK3 O01 C01 SING N N 2
TK3 C02 C01 SING N N 3
TK3 C02 C03 SING N N 4
TK3 C01 C10 SING N N 5
TK3 C03 C04 SING N N 6
TK3 C03 O02 SING N N 7
TK3 C10 C05 SING N N 8
TK3 C04 C05 SING N N 9
TK3 C35 C38 SING N N 10
TK3 C35 C37 SING N N 11
TK3 C35 C36 SING N N 12
TK3 C38 C33 SING N N 13
TK3 C05 C06 DOUB N N 14
TK3 C37 C29 SING N N 15
TK3 C36 C31 SING N N 16
TK3 C06 C07 SING N N 17
TK3 C33 C34 SING N N 18
TK3 C33 C32 SING N N 19
TK3 C29 C34 SING N N 20
TK3 C29 C26 SING N N 21
TK3 C29 C30 SING N N 22
TK3 C31 C32 SING N N 23
TK3 C31 C30 SING N N 24
TK3 C18 C13 SING N N 25
TK3 C07 C08 DOUB N E 26
TK3 C26 C25 SING N N 27
TK3 C08 C09 SING N N 28
TK3 C08 C14 SING N N 29
TK3 C11 C09 SING N N 30
TK3 C11 C12 SING N N 31
TK3 C13 C14 SING N N 32
TK3 C13 C12 SING N N 33
TK3 C13 C17 SING N N 34
TK3 C15 C14 SING N N 35
TK3 C15 C16 SING N N 36
TK3 C25 O03 SING N N 37
TK3 C25 C24 SING N N 38
TK3 C16 C17 SING N N 39
TK3 C24 C23 TRIP N N 40
TK3 C20 C17 SING N N 41
TK3 C20 C21 SING N N 42
TK3 C20 C22 SING N N 43
TK3 C23 C22 SING N N 44
TK3 C30 H1 SING N N 45
TK3 C30 H2 SING N N 46
TK3 C31 H3 SING N N 47
TK3 C32 H4 SING N N 48
TK3 C32 H5 SING N N 49
TK3 C33 H6 SING N N 50
TK3 C34 H7 SING N N 51
TK3 C34 H8 SING N N 52
TK3 C37 H9 SING N N 53
TK3 C37 H10 SING N N 54
TK3 C36 H11 SING N N 55
TK3 C36 H12 SING N N 56
TK3 C38 H13 SING N N 57
TK3 C38 H14 SING N N 58
TK3 C35 H15 SING N N 59
TK3 C26 H16 SING N N 60
TK3 C26 H17 SING N N 61
TK3 C25 H18 SING N N 62
TK3 C22 H19 SING N N 63
TK3 C22 H20 SING N N 64
TK3 C20 H21 SING N N 65
TK3 C17 H22 SING N N 66
TK3 C21 H23 SING N N 67
TK3 C21 H24 SING N N 68
TK3 C21 H25 SING N N 69
TK3 O03 H26 SING N N 70
TK3 C14 H27 SING N N 71
TK3 C15 H28 SING N N 72
TK3 C15 H29 SING N N 73
TK3 C16 H30 SING N N 74
TK3 C16 H31 SING N N 75
TK3 C12 H32 SING N N 76
TK3 C12 H33 SING N N 77
TK3 C11 H34 SING N N 78
TK3 C11 H35 SING N N 79
TK3 C09 H36 SING N N 80
TK3 C09 H37 SING N N 81
TK3 C18 H38 SING N N 82
TK3 C18 H39 SING N N 83
TK3 C18 H40 SING N N 84
TK3 C07 H41 SING N N 85
TK3 C06 H42 SING N N 86
TK3 C04 H43 SING N N 87
TK3 C04 H44 SING N N 88
TK3 C03 H45 SING N N 89
TK3 C01 H46 SING N N 90
TK3 C10 H47 SING N N 91
TK3 C10 H48 SING N N 92
TK3 C28 H49 SING N N 93
TK3 C28 H50 SING N N 94
TK3 O01 H51 SING N N 95
TK3 O02 H52 SING N N 96
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TK3 SMILES ACDLabs 12.01 "OC6C(=C)\C(O)C/C(=C\C=C4/CCCC5(C)C(C(C)CC#CC(O)CC23CC1CC(CC(C1)C2)C3)CCC45)C6"
TK3 InChI InChI 1.03
"InChI=1S/C36H52O3/c1-23(6-4-8-30(37)22-36-19-26-14-27(20-36)16-28(15-26)21-36)31-11-12-32-29(7-5-13-35(31,32)3)10-9-25-17-33(38)24(2)34(39)18-25/h9-10,23,26-28,30-34,37-39H,2,5-7,11-22H2,1,3H3/b29-10+/t23-,26-,27+,28-,30+,31-,32+,33-,34-,35-,36-/m1/s1"
TK3 InChIKey InChI 1.03 UFJLHOSCLNTAFF-ICORUNMPSA-N
TK3 SMILES_CANONICAL CACTVS 3.370 "C[C@H](CC#C[C@H](O)CC12CC3CC(CC(C3)C1)C2)[C@H]4CC[C@H]5/C(CCC[C@]45C)=C/C=C6C[C@@H](O)C(=C)[C@H](O)C6"
TK3 SMILES CACTVS 3.370 "C[CH](CC#C[CH](O)CC12CC3CC(CC(C3)C1)C2)[CH]4CC[CH]5C(CCC[C]45C)=CC=C6C[CH](O)C(=C)[CH](O)C6"
TK3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CC#C[C@@H](CC12CC3CC(C1)CC(C3)C2)O)[C@H]4CC[C@@H]\5[C@@]4(CCC/C5=C\C=C6C[C@H](C(=C)[C@@H](C6)O)O)C"
TK3 SMILES "OpenEye OEToolkits" 1.7.6 "CC(CC#CC(CC12CC3CC(C1)CC(C3)C2)O)C4CCC5C4(CCCC5=CC=C6CC(C(=C)C(C6)O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TK3 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-{(2R,6R)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
TK3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6R)-7-(1-adamantyl)-6-oxidanyl-hept-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TK3 "Create component" 2012-06-07 PDBJ
TK3 "Initial release" 2013-06-12 RCSB
#