data_TKA
#
_chem_comp.id TKA
_chem_comp.name "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H50 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-07
_chem_comp.pdbx_modified_date 2013-06-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 518.770
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TKA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VTB
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TKA C29 C29 C 0 1 N N N 9.772 -1.062 27.809 6.017 0.655 0.028 C29 TKA 1
TKA C30 C30 C 0 1 N N N 8.792 -2.297 27.599 5.554 1.398 1.282 C30 TKA 2
TKA C31 C31 C 0 1 N N N 7.301 -1.788 27.379 5.356 2.879 0.953 C31 TKA 3
TKA C32 C32 C 0 1 N N N 6.840 -1.003 28.670 6.679 3.475 0.467 C32 TKA 4
TKA C33 C33 C 0 1 N N N 7.788 0.266 28.913 7.142 2.731 -0.787 C33 TKA 5
TKA C34 C34 C 0 1 N N N 9.276 -0.235 29.137 7.340 1.250 -0.458 C34 TKA 6
TKA C37 C37 C 0 1 N N N 9.670 -0.105 26.528 4.960 0.796 -1.069 C37 TKA 7
TKA C36 C36 C 0 1 N N N 7.227 -0.833 26.103 4.299 3.021 -0.144 C36 TKA 8
TKA C38 C38 C 0 1 N N N 7.729 1.226 27.638 6.085 2.873 -1.885 C38 TKA 9
TKA C35 C35 C 0 1 N N N 8.190 0.420 26.330 4.763 2.277 -1.398 C35 TKA 10
TKA C25 C25 C 0 1 N N S 11.189 -1.695 27.948 6.215 -0.826 0.358 C25 TKA 11
TKA C24 C24 C 0 1 N N N 12.183 -0.662 28.147 4.943 -1.399 0.825 C24 TKA 12
TKA O03 O03 O 0 1 N N N 11.248 -2.581 29.077 6.648 -1.521 -0.814 O03 TKA 13
TKA C23 C23 C 0 1 N N N 12.931 0.240 28.290 3.928 -1.856 1.198 C23 TKA 14
TKA C22 C22 C 0 1 N N N 13.761 1.400 28.443 2.655 -2.429 1.666 C22 TKA 15
TKA C20 C20 C 0 1 N N R 13.041 2.541 27.680 1.598 -2.287 0.569 C20 TKA 16
TKA C21 C21 C 0 1 N N N 11.908 3.098 28.624 2.002 -3.133 -0.641 C21 TKA 17
TKA C17 C17 C 0 1 N N R 14.131 3.606 27.242 0.245 -2.768 1.098 C17 TKA 18
TKA C13 C13 C 0 1 N N R 13.665 4.833 26.398 -0.828 -2.603 0.034 C13 TKA 19
TKA C14 C14 C 0 1 N N S 15.109 5.382 26.048 -2.115 -2.337 0.865 C14 TKA 20
TKA C15 C15 C 0 1 N N N 15.842 4.132 25.482 -1.609 -1.308 1.878 C15 TKA 21
TKA C16 C16 C 0 1 N N N 15.309 3.008 26.361 -0.217 -1.879 2.282 C16 TKA 22
TKA C12 C12 C 0 1 N N N 12.904 5.972 27.212 -1.110 -3.767 -0.887 C12 TKA 23
TKA C11 C11 C 0 1 N N N 12.786 7.287 26.345 -2.145 -3.298 -1.924 C11 TKA 24
TKA C09 C09 C 0 1 N N N 14.200 7.759 25.904 -3.438 -2.827 -1.262 C09 TKA 25
TKA C08 C08 C 0 1 N N N 14.879 6.610 25.095 -3.143 -1.874 -0.124 C08 TKA 26
TKA C18 C18 C 0 1 N N N 12.746 4.361 25.145 -0.521 -1.360 -0.803 C18 TKA 27
TKA C07 C07 C 0 1 N N N 15.200 6.625 23.793 -3.746 -0.696 -0.008 C07 TKA 28
TKA C06 C06 C 0 1 N N N 14.996 7.719 22.859 -4.740 -0.277 -1.008 C06 TKA 29
TKA C05 C05 C 0 1 N N N 14.680 7.657 21.577 -5.419 0.853 -0.838 C05 TKA 30
TKA C04 C04 C 0 1 N N N 14.542 8.994 20.817 -6.524 1.238 -1.794 C04 TKA 31
TKA C03 C03 C 0 1 N N R 15.168 8.961 19.386 -7.807 1.477 -0.989 C03 TKA 32
TKA C02 C02 C 0 1 N N N 14.677 7.729 18.570 -7.488 2.399 0.166 C02 TKA 33
TKA C01 C01 C 0 1 N N R 15.044 6.400 19.252 -6.382 2.014 1.122 C01 TKA 34
TKA C10 C10 C 0 1 N N N 14.438 6.389 20.703 -5.103 1.772 0.320 C10 TKA 35
TKA C28 C28 C 0 1 N N N 13.955 7.799 17.412 -8.155 3.514 0.332 C28 TKA 36
TKA O01 O01 O 0 1 N N N 14.482 5.310 18.463 -6.170 3.070 2.061 O01 TKA 37
TKA O02 O02 O 0 1 N N N 16.611 8.894 19.486 -8.297 0.232 -0.486 O02 TKA 38
TKA H1 H1 H 0 1 N N N 8.827 -2.943 28.488 4.611 0.974 1.629 H1 TKA 39
TKA H2 H2 H 0 1 N N N 9.114 -2.870 26.717 6.306 1.298 2.064 H2 TKA 40
TKA H3 H3 H 0 1 N N N 6.641 -2.654 27.222 5.025 3.409 1.846 H3 TKA 41
TKA H4 H4 H 0 1 N N N 5.803 -0.662 28.537 6.538 4.530 0.232 H4 TKA 42
TKA H5 H5 H 0 1 N N N 6.897 -1.672 29.542 7.431 3.374 1.248 H5 TKA 43
TKA H6 H6 H 0 1 N N N 7.445 0.815 29.802 8.085 3.155 -1.134 H6 TKA 44
TKA H7 H7 H 0 1 N N N 9.314 -0.894 30.017 8.093 1.149 0.324 H7 TKA 45
TKA H8 H8 H 0 1 N N N 9.935 0.631 29.299 7.671 0.720 -1.351 H8 TKA 46
TKA H9 H9 H 0 1 N N N 9.975 -0.668 25.633 5.291 0.266 -1.962 H9 TKA 47
TKA H10 H10 H 0 1 N N N 10.341 0.755 26.667 4.018 0.372 -0.723 H10 TKA 48
TKA H11 H11 H 0 1 N N N 6.193 -0.483 25.965 3.356 2.597 0.202 H11 TKA 49
TKA H12 H12 H 0 1 N N N 7.549 -1.387 25.209 4.158 4.076 -0.379 H12 TKA 50
TKA H13 H13 H 0 1 N N N 8.401 2.083 27.795 5.944 3.928 -2.119 H13 TKA 51
TKA H14 H14 H 0 1 N N N 6.699 1.588 27.500 6.416 2.343 -2.778 H14 TKA 52
TKA H15 H15 H 0 1 N N N 8.144 1.084 25.454 4.010 2.378 -2.180 H15 TKA 53
TKA H16 H16 H 0 1 N N N 11.411 -2.250 27.025 6.968 -0.927 1.139 H16 TKA 54
TKA H17 H17 H 0 1 N N N 12.119 -2.954 29.142 6.026 -1.474 -1.552 H17 TKA 55
TKA H18 H18 H 0 1 N N N 14.756 1.218 28.010 2.796 -3.484 1.901 H18 TKA 56
TKA H19 H19 H 0 1 N N N 13.866 1.658 29.507 2.324 -1.899 2.559 H19 TKA 57
TKA H20 H20 H 0 1 N N N 12.573 2.127 26.775 1.521 -1.242 0.272 H20 TKA 58
TKA H21 H21 H 0 1 N N N 11.205 2.289 28.871 2.079 -4.179 -0.343 H21 TKA 59
TKA H22 H22 H 0 1 N N N 12.359 3.486 29.549 1.249 -3.032 -1.422 H22 TKA 60
TKA H23 H23 H 0 1 N N N 11.369 3.908 28.111 2.966 -2.790 -1.018 H23 TKA 61
TKA H24 H24 H 0 1 N N N 14.586 3.998 28.164 0.311 -3.810 1.411 H24 TKA 62
TKA H25 H25 H 0 1 N N N 15.605 5.719 26.970 -2.447 -3.245 1.369 H25 TKA 63
TKA H26 H26 H 0 1 N N N 15.585 3.966 24.425 -1.506 -0.328 1.414 H26 TKA 64
TKA H27 H27 H 0 1 N N N 16.933 4.232 25.583 -2.271 -1.260 2.743 H27 TKA 65
TKA H28 H28 H 0 1 N N N 14.929 2.189 25.733 -0.306 -2.476 3.189 H28 TKA 66
TKA H29 H29 H 0 1 N N N 16.110 2.629 27.013 0.491 -1.064 2.436 H29 TKA 67
TKA H30 H30 H 0 1 N N N 13.464 6.194 28.133 -0.193 -4.072 -1.391 H30 TKA 68
TKA H31 H31 H 0 1 N N N 11.895 5.618 27.472 -1.513 -4.603 -0.314 H31 TKA 69
TKA H32 H32 H 0 1 N N N 12.308 8.077 26.943 -1.721 -2.476 -2.501 H32 TKA 70
TKA H33 H33 H 0 1 N N N 12.175 7.082 25.453 -2.372 -4.124 -2.598 H33 TKA 71
TKA H34 H34 H 0 1 N N N 14.805 7.995 26.792 -4.059 -2.325 -2.003 H34 TKA 72
TKA H35 H35 H 0 1 N N N 14.111 8.655 25.272 -3.975 -3.690 -0.869 H35 TKA 73
TKA H36 H36 H 0 1 N N N 11.775 4.003 25.516 -1.374 -1.133 -1.444 H36 TKA 74
TKA H37 H37 H 0 1 N N N 12.588 5.212 24.466 -0.329 -0.515 -0.142 H37 TKA 75
TKA H38 H38 H 0 1 N N N 13.253 3.549 24.604 0.357 -1.545 -1.421 H38 TKA 76
TKA H39 H39 H 0 1 N N N 15.658 5.730 23.397 -3.506 -0.046 0.820 H39 TKA 77
TKA H40 H40 H 0 1 N N N 15.118 8.712 23.265 -4.919 -0.888 -1.881 H40 TKA 78
TKA H41 H41 H 0 1 N N N 15.045 9.780 21.400 -6.248 2.151 -2.323 H41 TKA 79
TKA H42 H42 H 0 1 N N N 13.472 9.234 20.724 -6.684 0.434 -2.512 H42 TKA 80
TKA H43 H43 H 0 1 N N N 14.869 9.876 18.853 -8.561 1.935 -1.629 H43 TKA 81
TKA H44 H44 H 0 1 N N N 16.138 6.309 19.317 -6.658 1.101 1.651 H44 TKA 82
TKA H45 H45 H 0 1 N N N 13.351 6.253 20.608 -4.351 1.311 0.960 H45 TKA 83
TKA H46 H46 H 0 1 N N N 14.870 5.530 21.237 -4.728 2.721 -0.065 H46 TKA 84
TKA H47 H47 H 0 1 N N N 13.686 8.761 17.001 -7.917 4.167 1.159 H47 TKA 85
TKA H48 H48 H 0 1 N N N 13.654 6.893 16.908 -8.943 3.781 -0.357 H48 TKA 86
TKA H49 H49 H 0 1 N N N 14.699 4.479 18.870 -6.947 3.283 2.595 H49 TKA 87
TKA H50 H50 H 0 1 N N N 16.929 9.639 19.982 -9.108 0.310 0.034 H50 TKA 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TKA C28 C02 DOUB N N 1
TKA O01 C01 SING N N 2
TKA C02 C01 SING N N 3
TKA C02 C03 SING N N 4
TKA C01 C10 SING N N 5
TKA C03 O02 SING N N 6
TKA C03 C04 SING N N 7
TKA C10 C05 SING N N 8
TKA C04 C05 SING N N 9
TKA C05 C06 DOUB N N 10
TKA C06 C07 SING N N 11
TKA C07 C08 DOUB N E 12
TKA C08 C09 SING N N 13
TKA C08 C14 SING N N 14
TKA C18 C13 SING N N 15
TKA C15 C14 SING N N 16
TKA C15 C16 SING N N 17
TKA C09 C11 SING N N 18
TKA C14 C13 SING N N 19
TKA C36 C35 SING N N 20
TKA C36 C31 SING N N 21
TKA C35 C37 SING N N 22
TKA C35 C38 SING N N 23
TKA C11 C12 SING N N 24
TKA C16 C17 SING N N 25
TKA C13 C12 SING N N 26
TKA C13 C17 SING N N 27
TKA C37 C29 SING N N 28
TKA C17 C20 SING N N 29
TKA C31 C30 SING N N 30
TKA C31 C32 SING N N 31
TKA C30 C29 SING N N 32
TKA C38 C33 SING N N 33
TKA C20 C22 SING N N 34
TKA C20 C21 SING N N 35
TKA C29 C25 SING N N 36
TKA C29 C34 SING N N 37
TKA C25 C24 SING N N 38
TKA C25 O03 SING N N 39
TKA C24 C23 TRIP N N 40
TKA C23 C22 SING N N 41
TKA C32 C33 SING N N 42
TKA C33 C34 SING N N 43
TKA C30 H1 SING N N 44
TKA C30 H2 SING N N 45
TKA C31 H3 SING N N 46
TKA C32 H4 SING N N 47
TKA C32 H5 SING N N 48
TKA C33 H6 SING N N 49
TKA C34 H7 SING N N 50
TKA C34 H8 SING N N 51
TKA C37 H9 SING N N 52
TKA C37 H10 SING N N 53
TKA C36 H11 SING N N 54
TKA C36 H12 SING N N 55
TKA C38 H13 SING N N 56
TKA C38 H14 SING N N 57
TKA C35 H15 SING N N 58
TKA C25 H16 SING N N 59
TKA O03 H17 SING N N 60
TKA C22 H18 SING N N 61
TKA C22 H19 SING N N 62
TKA C20 H20 SING N N 63
TKA C21 H21 SING N N 64
TKA C21 H22 SING N N 65
TKA C21 H23 SING N N 66
TKA C17 H24 SING N N 67
TKA C14 H25 SING N N 68
TKA C15 H26 SING N N 69
TKA C15 H27 SING N N 70
TKA C16 H28 SING N N 71
TKA C16 H29 SING N N 72
TKA C12 H30 SING N N 73
TKA C12 H31 SING N N 74
TKA C11 H32 SING N N 75
TKA C11 H33 SING N N 76
TKA C09 H34 SING N N 77
TKA C09 H35 SING N N 78
TKA C18 H36 SING N N 79
TKA C18 H37 SING N N 80
TKA C18 H38 SING N N 81
TKA C07 H39 SING N N 82
TKA C06 H40 SING N N 83
TKA C04 H41 SING N N 84
TKA C04 H42 SING N N 85
TKA C03 H43 SING N N 86
TKA C01 H44 SING N N 87
TKA C10 H45 SING N N 88
TKA C10 H46 SING N N 89
TKA C28 H47 SING N N 90
TKA C28 H48 SING N N 91
TKA O01 H49 SING N N 92
TKA O02 H50 SING N N 93
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TKA SMILES ACDLabs 12.01 "OC6C(=C)\C(O)C/C(=C\C=C4/CCCC5(C)C(C(C)CC#CC(O)C23CC1CC(CC(C1)C2)C3)CCC45)C6"
TKA InChI InChI 1.03
"InChI=1S/C35H50O3/c1-22(6-4-8-33(38)35-19-25-14-26(20-35)16-27(15-25)21-35)29-11-12-30-28(7-5-13-34(29,30)3)10-9-24-17-31(36)23(2)32(37)18-24/h9-10,22,25-27,29-33,36-38H,2,5-7,11-21H2,1,3H3/b28-10+/t22-,25-,26+,27-,29-,30+,31-,32-,33-,34-,35-/m1/s1"
TKA InChIKey InChI 1.03 RDOXAQMJPJCGHT-KJUWVWBVSA-N
TKA SMILES_CANONICAL CACTVS 3.370 "C[C@H](CC#C[C@@H](O)C12CC3CC(CC(C3)C1)C2)[C@H]4CC[C@H]5/C(CCC[C@]45C)=C/C=C6C[C@@H](O)C(=C)[C@H](O)C6"
TKA SMILES CACTVS 3.370 "C[CH](CC#C[CH](O)C12CC3CC(CC(C3)C1)C2)[CH]4CC[CH]5C(CCC[C]45C)=CC=C6C[CH](O)C(=C)[CH](O)C6"
TKA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CC#C[C@H](C12CC3CC(C1)CC(C3)C2)O)[C@H]4CC[C@@H]\5[C@@]4(CCC/C5=C\C=C6C[C@H](C(=C)[C@@H](C6)O)O)C"
TKA SMILES "OpenEye OEToolkits" 1.7.6 "CC(CC#CC(C12CC3CC(C1)CC(C3)C2)O)C4CCC5C4(CCCC5=CC=C6CC(C(=C)C(C6)O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TKA "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-6-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hex-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol"
TKA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-6-(1-adamantyl)-6-oxidanyl-hex-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TKA "Create component" 2012-06-07 PDBJ
TKA "Initial release" 2013-06-12 RCSB
#