data_TKC # _chem_comp.id TKC _chem_comp.name "(2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N6 O16 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-26 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.295 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TKC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8J0E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TKC C02 C1 C 0 1 Y N N N N N 158.594 106.143 134.488 7.877 -4.160 -1.008 C02 TKC 1 TKC C04 C2 C 0 1 Y N N N N N 157.943 108.118 133.513 8.576 -3.726 1.148 C04 TKC 2 TKC C06 C3 C 0 1 Y N N N N N 156.854 107.458 135.467 6.981 -2.323 0.271 C06 TKC 3 TKC C07 C4 C 0 1 Y N N N N N 157.643 106.328 135.504 7.007 -3.059 -0.925 C07 TKC 4 TKC C09 C5 C 0 1 Y N N N N N 156.294 106.306 137.204 5.563 -1.462 -1.181 C09 TKC 5 TKC C11 C6 C 0 1 N N R N N N 155.004 108.403 136.925 5.685 -0.294 1.052 C11 TKC 6 TKC C13 C7 C 0 1 N N R N N N 152.933 108.236 136.165 4.317 1.547 1.373 C13 TKC 7 TKC C14 C8 C 0 1 N N N N N N 151.902 107.728 135.132 3.499 2.510 0.511 C14 TKC 8 TKC C28 C9 C 0 1 N N N N N N 142.458 106.736 133.494 -6.282 -0.592 -0.075 C28 TKC 9 TKC C30 C10 C 0 1 N N N N N N 140.999 107.011 133.912 -6.909 -1.726 0.696 C30 TKC 10 TKC C31 C11 C 0 1 N N N N N N 139.995 106.030 133.264 -8.361 -1.906 0.247 C31 TKC 11 TKC C32 C12 C 0 1 N N R N N N 138.569 106.625 133.163 -8.997 -3.056 1.030 C32 TKC 12 TKC C34 C13 C 0 1 N N N N N N 138.406 107.887 134.021 -10.386 -3.314 0.503 C34 TKC 13 TKC C37 C14 C 0 1 N N S N N N 153.567 109.659 135.675 5.760 2.068 1.521 C37 TKC 14 TKC C39 C15 C 0 1 N N S N N N 154.578 109.843 136.454 6.636 0.926 0.952 C39 TKC 15 TKC N01 N1 N 0 1 N N N N N N 159.445 104.960 134.497 7.946 -4.923 -2.161 N01 TKC 16 TKC N03 N2 N 0 1 Y N N N N N 158.717 107.040 133.524 8.635 -4.448 0.044 N03 TKC 17 TKC N05 N3 N 0 1 Y N N N N N 157.035 108.322 134.458 7.773 -2.691 1.273 N05 TKC 18 TKC N08 N4 N 0 1 Y N N N N N 157.267 105.641 136.594 6.119 -2.481 -1.769 N08 TKC 19 TKC N10 N5 N 0 1 Y N N N N N 156.023 107.413 136.531 6.062 -1.323 0.080 N10 TKC 20 TKC N33 N6 N 0 1 N N N N N N 137.585 105.622 133.573 -9.071 -2.699 2.453 N33 TKC 21 TKC O12 O1 O 0 1 N N N N N N 153.981 107.454 136.268 4.391 0.261 0.734 O12 TKC 22 TKC O15 O2 O 0 1 N N N N N N 150.862 108.680 135.087 2.140 2.071 0.464 O15 TKC 23 TKC O17 O3 O 0 1 N N N N N N 149.368 106.875 136.180 0.946 4.262 0.084 O17 TKC 24 TKC O18 O4 O 0 1 N N N N N N 148.638 109.220 136.316 1.326 2.789 -1.930 O18 TKC 25 TKC O19 O5 O 0 1 N N N N N N 148.476 108.018 134.049 -0.431 2.152 -0.081 O19 TKC 26 TKC O21 O6 O 0 1 N N N N N N 147.731 110.488 134.047 -2.384 3.691 0.773 O21 TKC 27 TKC O22 O7 O 0 1 N N N N N N 147.334 109.139 132.036 -2.091 3.178 -1.681 O22 TKC 28 TKC O23 O8 O 0 1 N N N N N N 145.871 108.675 134.116 -2.918 1.308 -0.202 O23 TKC 29 TKC O25 O9 O 0 1 N N N N N N 144.761 107.740 131.982 -5.269 2.161 -0.540 O25 TKC 30 TKC O26 O10 O 0 1 N N N N N N 145.720 106.143 133.598 -4.364 0.556 -2.265 O26 TKC 31 TKC O27 O11 O 0 1 N N N N N N 143.513 107.345 134.193 -5.004 -0.252 0.154 O27 TKC 32 TKC O29 O12 O 0 1 N N N N N N 142.688 106.010 132.587 -6.930 0.010 -0.898 O29 TKC 33 TKC O35 O13 O 0 1 N N N N N N 138.118 107.786 135.242 -10.556 -4.028 -0.621 O35 TKC 34 TKC O36 O14 O 0 1 N N N N N N 138.559 109.027 133.502 -11.346 -2.878 1.093 O36 TKC 35 TKC O38 O15 O 0 1 N N N N N N 152.625 110.691 135.842 6.069 2.298 2.898 O38 TKC 36 TKC O40 O16 O 0 1 N N N N N N 155.628 110.465 135.759 6.992 1.185 -0.407 O40 TKC 37 TKC P16 P1 P 0 1 N N N N N N 149.324 108.193 135.449 0.994 2.850 -0.356 P16 TKC 38 TKC P20 P2 P 0 1 N N N N N N 147.357 109.115 133.544 -1.959 2.595 -0.328 P20 TKC 39 TKC P24 P3 P 0 1 N N N N N N 144.983 107.452 133.447 -4.408 0.970 -0.710 P24 TKC 40 TKC H1 H1 H 0 1 N N N N N N 158.055 108.843 132.720 9.210 -3.995 1.980 H1 TKC 41 TKC H2 H2 H 0 1 N N N N N N 155.799 105.992 138.111 4.817 -0.821 -1.627 H2 TKC 42 TKC H3 H3 H 0 1 N N N N N N 154.863 108.353 138.015 5.690 -0.702 2.063 H3 TKC 43 TKC H4 H4 H 0 1 N N N N N N 152.428 108.400 137.128 3.856 1.447 2.356 H4 TKC 44 TKC H5 H5 H 0 1 N N N N N N 151.506 106.750 135.443 3.543 3.510 0.942 H5 TKC 45 TKC H6 H6 H 0 1 N N N N N N 152.373 107.635 134.142 3.909 2.532 -0.499 H6 TKC 46 TKC H7 H7 H 0 1 N N N N N N 140.734 108.035 133.610 -6.354 -2.644 0.507 H7 TKC 47 TKC H8 H8 H 0 1 N N N N N N 140.924 106.920 135.006 -6.884 -1.498 1.762 H8 TKC 48 TKC H9 H9 H 0 1 N N N N N N 139.953 105.114 133.872 -8.916 -0.987 0.437 H9 TKC 49 TKC H10 H10 H 0 1 N N N N N N 140.347 105.782 132.252 -8.386 -2.133 -0.818 H10 TKC 50 TKC H11 H11 H 0 1 N N N N N N 138.388 106.898 132.113 -8.392 -3.955 0.911 H11 TKC 51 TKC H12 H12 H 0 1 N N N N N N 153.853 109.556 134.618 5.897 2.981 0.943 H12 TKC 52 TKC H13 H13 H 0 1 N N N N N N 154.313 110.428 137.347 7.526 0.776 1.564 H13 TKC 53 TKC H14 H14 H 0 1 N N N N N N 160.060 104.985 133.709 7.390 -4.700 -2.924 H14 TKC 54 TKC H15 H15 H 0 1 N N N N N N 159.984 104.944 135.339 8.550 -5.680 -2.206 H15 TKC 55 TKC H16 H16 H 0 1 N N N N N N 136.666 106.010 133.507 -9.628 -1.869 2.588 H16 TKC 56 TKC H17 H17 H 0 1 N N N N N N 137.654 104.824 132.975 -9.429 -3.468 3.000 H17 TKC 57 TKC H19 H19 H 0 1 N N N N N N 148.379 108.819 137.138 1.373 1.893 -2.288 H19 TKC 58 TKC H20 H20 H 0 1 N N N N N N 147.871 111.069 133.309 -2.322 3.377 1.685 H20 TKC 59 TKC H21 H21 H 0 1 N N N N N N 145.890 105.774 132.739 -3.816 -0.219 -2.451 H21 TKC 60 TKC H22 H22 H 0 1 N N N N N N 138.053 108.653 135.625 -11.465 -4.167 -0.919 H22 TKC 61 TKC H23 H23 H 0 1 N N N N N N 153.002 111.514 135.555 6.966 2.627 3.049 H23 TKC 62 TKC H24 H24 H 0 1 N N N N N N 156.364 110.593 136.345 7.513 1.990 -0.530 H24 TKC 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TKC O25 P24 DOUB N N 1 TKC O22 P20 DOUB N N 2 TKC O29 C28 DOUB N N 3 TKC C32 C31 SING N N 4 TKC C32 N33 SING N N 5 TKC C32 C34 SING N N 6 TKC C31 C30 SING N N 7 TKC P24 O26 SING N N 8 TKC P24 O23 SING N N 9 TKC P24 O27 SING N N 10 TKC C28 C30 SING N N 11 TKC C28 O27 SING N N 12 TKC O36 C34 DOUB N N 13 TKC C04 N03 DOUB Y N 14 TKC C04 N05 SING Y N 15 TKC N03 C02 SING Y N 16 TKC P20 O21 SING N N 17 TKC P20 O19 SING N N 18 TKC P20 O23 SING N N 19 TKC C34 O35 SING N N 20 TKC O19 P16 SING N N 21 TKC N05 C06 DOUB Y N 22 TKC C02 N01 SING N N 23 TKC C02 C07 DOUB Y N 24 TKC O15 C14 SING N N 25 TKC O15 P16 SING N N 26 TKC C14 C13 SING N N 27 TKC P16 O17 DOUB N N 28 TKC P16 O18 SING N N 29 TKC C06 C07 SING Y N 30 TKC C06 N10 SING Y N 31 TKC C07 N08 SING Y N 32 TKC C37 O38 SING N N 33 TKC C37 C13 SING N N 34 TKC C37 C39 SING N N 35 TKC O40 C39 SING N N 36 TKC C13 O12 SING N N 37 TKC O12 C11 SING N N 38 TKC C39 C11 SING N N 39 TKC N10 C11 SING N N 40 TKC N10 C09 SING Y N 41 TKC N08 C09 DOUB Y N 42 TKC C04 H1 SING N N 43 TKC C09 H2 SING N N 44 TKC C11 H3 SING N N 45 TKC C13 H4 SING N N 46 TKC C14 H5 SING N N 47 TKC C14 H6 SING N N 48 TKC C30 H7 SING N N 49 TKC C30 H8 SING N N 50 TKC C31 H9 SING N N 51 TKC C31 H10 SING N N 52 TKC C32 H11 SING N N 53 TKC C37 H12 SING N N 54 TKC C39 H13 SING N N 55 TKC N01 H14 SING N N 56 TKC N01 H15 SING N N 57 TKC N33 H16 SING N N 58 TKC N33 H17 SING N N 59 TKC O18 H19 SING N N 60 TKC O21 H20 SING N N 61 TKC O26 H21 SING N N 62 TKC O35 H22 SING N N 63 TKC O38 H23 SING N N 64 TKC O40 H24 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TKC InChI InChI 1.06 "InChI=1S/C15H23N6O16P3/c16-6(15(25)26)1-2-8(22)35-39(29,30)37-40(31,32)36-38(27,28)33-3-7-10(23)11(24)14(34-7)21-5-20-9-12(17)18-4-19-13(9)21/h4-7,10-11,14,23-24H,1-3,16H2,(H,25,26)(H,27,28)(H,29,30)(H,31,32)(H2,17,18,19)/t6-,7-,10-,11+,14-/m1/s1" TKC InChIKey InChI 1.06 QSUGRYKGICURGW-CMYFRRJGSA-N TKC SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCC(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" TKC SMILES CACTVS 3.385 "N[CH](CCC(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" TKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC(=O)CC[C@H](C(=O)O)N)O)O)N" TKC SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OC(=O)CCC(C(=O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id TKC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TKC "Create component" 2023-04-26 PDBJ TKC "Initial release" 2024-04-17 RCSB #