data_TKD # _chem_comp.id TKD _chem_comp.name "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H52 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-06-07 _chem_comp.pdbx_modified_date 2013-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 532.796 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TKD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VTD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TKD C29 C29 C 0 1 N N N 9.350 -2.845 27.992 6.423 -1.083 0.009 C29 TKD 1 TKD C30 C30 C 0 1 N N N 8.731 -2.941 29.438 7.033 -0.456 1.264 C30 TKD 2 TKD C31 C31 C 0 1 N N N 7.544 -1.926 29.584 8.406 -1.078 1.529 C31 TKD 3 TKD C32 C32 C 0 1 N N N 8.079 -0.463 29.364 8.252 -2.586 1.736 C32 TKD 4 TKD C33 C33 C 0 1 N N N 8.691 -0.338 27.935 7.641 -3.213 0.481 C33 TKD 5 TKD C34 C34 C 0 1 N N N 9.861 -1.367 27.783 6.268 -2.591 0.216 C34 TKD 6 TKD C37 C37 C 0 1 N N N 8.218 -3.122 26.926 7.339 -0.824 -1.188 C37 TKD 7 TKD C36 C36 C 0 1 N N N 6.438 -2.259 28.517 9.323 -0.818 0.331 C36 TKD 8 TKD C38 C38 C 0 1 N N N 7.591 -0.645 26.871 8.557 -2.954 -0.717 C38 TKD 9 TKD C35 C35 C 0 1 N N N 7.040 -2.104 27.082 8.712 -1.445 -0.924 C35 TKD 10 TKD C26 C26 C 0 1 N N N 10.479 -3.910 27.714 5.050 -0.461 -0.255 C26 TKD 11 TKD C25 C25 C 0 1 N N S 11.646 -4.185 28.729 5.206 1.044 -0.478 C25 TKD 12 TKD C24 C24 C 0 1 N N N 12.578 -3.086 28.657 3.915 1.615 -0.894 C24 TKD 13 TKD C23 C23 C 0 1 N N N 13.301 -2.164 28.593 2.885 2.071 -1.226 C23 TKD 14 TKD C22 C22 C 0 1 N N N 14.156 -0.999 28.513 1.594 2.642 -1.642 C22 TKD 15 TKD C20 C20 C 0 1 N N R 13.414 0.307 28.128 0.551 2.394 -0.550 C20 TKD 16 TKD C17 C17 C 0 1 N N R 14.372 1.410 27.519 -0.818 2.876 -1.034 C17 TKD 17 TKD C21 C21 C 0 1 N N N 12.702 0.754 29.423 0.944 3.161 0.714 C21 TKD 18 TKD O03 O03 O 0 1 N N N 11.214 -4.290 30.083 5.632 1.664 0.737 O03 TKD 19 TKD C13 C13 C 0 1 N N R 13.774 2.706 26.881 -1.877 2.606 0.024 C13 TKD 20 TKD C14 C14 C 0 1 N N S 15.085 3.268 26.218 -3.165 2.367 -0.815 C14 TKD 21 TKD C15 C15 C 0 1 N N N 15.671 2.059 25.484 -2.641 1.427 -1.903 C15 TKD 22 TKD C16 C16 C 0 1 N N N 15.317 0.880 26.390 -1.269 2.062 -2.275 C16 TKD 23 TKD C12 C12 C 0 1 N N N 13.293 3.779 27.914 -2.181 3.693 1.028 C12 TKD 24 TKD C11 C11 C 0 1 N N N 13.059 5.176 27.279 -3.194 3.124 2.036 C11 TKD 25 TKD C09 C09 C 0 1 N N N 14.241 5.642 26.395 -4.480 2.667 1.351 C09 TKD 26 TKD C08 C08 C 0 1 N N N 14.719 4.549 25.431 -4.171 1.807 0.146 C08 TKD 27 TKD C18 C18 C 0 1 N N N 12.624 2.360 25.836 -1.531 1.314 0.767 C18 TKD 28 TKD C07 C07 C 0 1 N N N 14.854 4.640 24.100 -4.751 0.626 -0.039 C07 TKD 29 TKD C06 C06 C 0 1 N N N 14.586 5.789 23.247 -5.652 0.080 0.988 C06 TKD 30 TKD C05 C05 C 0 1 N N N 14.365 5.734 21.919 -6.162 -1.139 0.845 C05 TKD 31 TKD C04 C04 C 0 1 N N N 14.149 7.031 21.151 -7.203 -1.655 1.812 C04 TKD 32 TKD C03 C03 C 0 1 N N R 14.791 7.036 19.737 -8.437 -2.094 1.013 C03 TKD 33 TKD C02 C02 C 0 1 N N N 14.392 5.789 18.962 -7.985 -2.989 -0.119 C02 TKD 34 TKD C01 C01 C 0 1 N N R 14.901 4.531 19.631 -6.944 -2.472 -1.085 C01 TKD 35 TKD C10 C10 C 0 1 N N N 14.346 4.444 21.071 -5.714 -2.031 -0.290 C10 TKD 36 TKD C28 C28 C 0 1 N N N 13.631 5.765 17.847 -8.486 -4.192 -0.258 C28 TKD 37 TKD O01 O01 O 0 1 N N N 14.495 3.399 18.880 -6.580 -3.510 -1.998 O01 TKD 38 TKD O02 O02 O 0 1 N N N 16.211 7.035 19.866 -9.098 -0.945 0.481 O02 TKD 39 TKD H1 H1 H 0 1 N N N 8.359 -3.962 29.608 7.143 0.618 1.117 H1 TKD 40 TKD H2 H2 H 0 1 N N N 9.506 -2.704 30.182 6.380 -0.641 2.117 H2 TKD 41 TKD H3 H3 H 0 1 N N N 7.114 -2.009 30.593 8.841 -0.631 2.423 H3 TKD 42 TKD H4 H4 H 0 1 N N N 8.852 -0.239 30.114 9.230 -3.029 1.924 H4 TKD 43 TKD H5 H5 H 0 1 N N N 7.248 0.250 29.470 7.599 -2.770 2.589 H5 TKD 44 TKD H6 H6 H 0 1 N N N 9.075 0.682 27.785 7.531 -4.287 0.628 H6 TKD 45 TKD H7 H7 H 0 1 N N N 10.291 -1.275 26.775 5.615 -2.776 1.069 H7 TKD 46 TKD H8 H8 H 0 1 N N N 10.634 -1.145 28.533 5.833 -3.038 -0.678 H8 TKD 47 TKD H9 H9 H 0 1 N N N 7.833 -4.143 27.067 6.904 -1.270 -2.082 H9 TKD 48 TKD H10 H10 H 0 1 N N N 8.644 -3.027 25.916 7.449 0.251 -1.335 H10 TKD 49 TKD H11 H11 H 0 1 N N N 5.592 -1.567 28.637 9.432 0.256 0.184 H11 TKD 50 TKD H12 H12 H 0 1 N N N 6.089 -3.293 28.659 10.300 -1.261 0.520 H12 TKD 51 TKD H13 H13 H 0 1 N N N 8.023 -0.560 25.863 9.535 -3.396 -0.528 H13 TKD 52 TKD H14 H14 H 0 1 N N N 6.767 0.076 26.979 8.122 -3.400 -1.611 H14 TKD 53 TKD H15 H15 H 0 1 N N N 6.265 -2.317 26.331 9.365 -1.261 -1.777 H15 TKD 54 TKD H16 H16 H 0 1 N N N 9.964 -4.872 27.572 4.610 -0.916 -1.142 H16 TKD 55 TKD H17 H17 H 0 1 N N N 10.959 -3.608 26.771 4.400 -0.636 0.603 H17 TKD 56 TKD H18 H18 H 0 1 N N N 12.148 -5.115 28.424 5.949 1.221 -1.256 H18 TKD 57 TKD H19 H19 H 0 1 N N N 14.932 -1.191 27.757 1.705 3.715 -1.801 H19 TKD 58 TKD H20 H20 H 0 1 N N N 14.630 -0.850 29.495 1.269 2.169 -2.569 H20 TKD 59 TKD H21 H21 H 0 1 N N N 12.650 0.065 27.375 0.503 1.328 -0.329 H21 TKD 60 TKD H22 H22 H 0 1 N N N 15.024 1.740 28.341 -0.783 3.939 -1.271 H22 TKD 61 TKD H23 H23 H 0 1 N N N 12.057 -0.059 29.787 0.201 2.984 1.492 H23 TKD 62 TKD H24 H24 H 0 1 N N N 13.453 0.996 30.189 1.919 2.817 1.059 H24 TKD 63 TKD H25 H25 H 0 1 N N N 12.089 1.644 29.216 0.992 4.227 0.493 H25 TKD 64 TKD H26 H26 H 0 1 N N N 11.963 -4.456 30.643 5.017 1.548 1.474 H26 TKD 65 TKD H27 H27 H 0 1 N N N 15.776 3.549 27.026 -3.524 3.299 -1.250 H27 TKD 66 TKD H28 H28 H 0 1 N N N 15.212 1.942 24.491 -2.509 0.419 -1.512 H28 TKD 67 TKD H29 H29 H 0 1 N N N 16.761 2.157 25.375 -3.310 1.423 -2.764 H29 TKD 68 TKD H30 H30 H 0 1 N N N 14.803 0.101 25.807 -1.381 2.720 -3.136 H30 TKD 69 TKD H31 H31 H 0 1 N N N 16.232 0.462 26.834 -0.542 1.279 -2.493 H31 TKD 70 TKD H32 H32 H 0 1 N N N 12.349 3.435 28.361 -1.268 3.985 1.546 H32 TKD 71 TKD H33 H33 H 0 1 N N N 14.057 3.875 28.700 -2.610 4.557 0.520 H33 TKD 72 TKD H34 H34 H 0 1 N N N 12.915 5.909 28.087 -2.744 2.274 2.549 H34 TKD 73 TKD H35 H35 H 0 1 N N N 12.152 5.132 26.658 -3.436 3.893 2.769 H35 TKD 74 TKD H36 H36 H 0 1 N N N 15.079 5.928 27.048 -5.081 2.097 2.059 H36 TKD 75 TKD H37 H37 H 0 1 N N N 13.920 6.515 25.808 -5.043 3.542 1.025 H37 TKD 76 TKD H38 H38 H 0 1 N N N 11.744 1.975 26.372 -0.653 1.479 1.392 H38 TKD 77 TKD H39 H39 H 0 1 N N N 12.346 3.269 25.282 -2.373 1.019 1.394 H39 TKD 78 TKD H40 H40 H 0 1 N N N 12.987 1.597 25.131 -1.321 0.525 0.045 H40 TKD 79 TKD H41 H41 H 0 1 N N N 15.205 3.750 23.598 -4.561 0.066 -0.943 H41 TKD 80 TKD H42 H42 H 0 1 N N N 14.562 6.762 23.715 -5.900 0.671 1.858 H42 TKD 81 TKD H43 H43 H 0 1 N N N 14.586 7.856 21.733 -6.801 -2.506 2.362 H43 TKD 82 TKD H44 H44 H 0 1 N N N 13.067 7.193 21.041 -7.478 -0.865 2.510 H44 TKD 83 TKD H45 H45 H 0 1 N N N 14.450 7.929 19.193 -9.119 -2.640 1.664 H45 TKD 84 TKD H46 H46 H 0 1 N N N 15.999 4.576 19.684 -7.346 -1.621 -1.635 H46 TKD 85 TKD H47 H47 H 0 1 N N N 13.300 4.110 21.002 -5.034 -1.483 -0.942 H47 TKD 86 TKD H48 H48 H 0 1 N N N 14.938 3.688 21.608 -5.208 -2.906 0.117 H48 TKD 87 TKD H49 H49 H 0 1 N N N 13.250 6.687 17.433 -8.155 -4.823 -1.069 H49 TKD 88 TKD H50 H50 H 0 1 N N N 13.403 4.824 17.369 -9.229 -4.551 0.438 H50 TKD 89 TKD H51 H51 H 0 1 N N N 14.814 2.609 19.300 -7.317 -3.844 -2.527 H51 TKD 90 TKD H52 H52 H 0 1 N N N 16.486 7.806 20.348 -9.889 -1.150 -0.036 H52 TKD 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TKD C28 C02 DOUB N N 1 TKD O01 C01 SING N N 2 TKD C02 C01 SING N N 3 TKD C02 C03 SING N N 4 TKD C01 C10 SING N N 5 TKD C03 O02 SING N N 6 TKD C03 C04 SING N N 7 TKD C10 C05 SING N N 8 TKD C04 C05 SING N N 9 TKD C05 C06 DOUB N N 10 TKD C06 C07 SING N N 11 TKD C07 C08 DOUB N E 12 TKD C08 C14 SING N N 13 TKD C08 C09 SING N N 14 TKD C15 C14 SING N N 15 TKD C15 C16 SING N N 16 TKD C18 C13 SING N N 17 TKD C14 C13 SING N N 18 TKD C16 C17 SING N N 19 TKD C09 C11 SING N N 20 TKD C38 C35 SING N N 21 TKD C38 C33 SING N N 22 TKD C13 C17 SING N N 23 TKD C13 C12 SING N N 24 TKD C37 C35 SING N N 25 TKD C37 C29 SING N N 26 TKD C35 C36 SING N N 27 TKD C11 C12 SING N N 28 TKD C17 C20 SING N N 29 TKD C26 C29 SING N N 30 TKD C26 C25 SING N N 31 TKD C34 C33 SING N N 32 TKD C34 C29 SING N N 33 TKD C33 C32 SING N N 34 TKD C29 C30 SING N N 35 TKD C20 C22 SING N N 36 TKD C20 C21 SING N N 37 TKD C22 C23 SING N N 38 TKD C36 C31 SING N N 39 TKD C23 C24 TRIP N N 40 TKD C24 C25 SING N N 41 TKD C25 O03 SING N N 42 TKD C32 C31 SING N N 43 TKD C30 C31 SING N N 44 TKD C30 H1 SING N N 45 TKD C30 H2 SING N N 46 TKD C31 H3 SING N N 47 TKD C32 H4 SING N N 48 TKD C32 H5 SING N N 49 TKD C33 H6 SING N N 50 TKD C34 H7 SING N N 51 TKD C34 H8 SING N N 52 TKD C37 H9 SING N N 53 TKD C37 H10 SING N N 54 TKD C36 H11 SING N N 55 TKD C36 H12 SING N N 56 TKD C38 H13 SING N N 57 TKD C38 H14 SING N N 58 TKD C35 H15 SING N N 59 TKD C26 H16 SING N N 60 TKD C26 H17 SING N N 61 TKD C25 H18 SING N N 62 TKD C22 H19 SING N N 63 TKD C22 H20 SING N N 64 TKD C20 H21 SING N N 65 TKD C17 H22 SING N N 66 TKD C21 H23 SING N N 67 TKD C21 H24 SING N N 68 TKD C21 H25 SING N N 69 TKD O03 H26 SING N N 70 TKD C14 H27 SING N N 71 TKD C15 H28 SING N N 72 TKD C15 H29 SING N N 73 TKD C16 H30 SING N N 74 TKD C16 H31 SING N N 75 TKD C12 H32 SING N N 76 TKD C12 H33 SING N N 77 TKD C11 H34 SING N N 78 TKD C11 H35 SING N N 79 TKD C09 H36 SING N N 80 TKD C09 H37 SING N N 81 TKD C18 H38 SING N N 82 TKD C18 H39 SING N N 83 TKD C18 H40 SING N N 84 TKD C07 H41 SING N N 85 TKD C06 H42 SING N N 86 TKD C04 H43 SING N N 87 TKD C04 H44 SING N N 88 TKD C03 H45 SING N N 89 TKD C01 H46 SING N N 90 TKD C10 H47 SING N N 91 TKD C10 H48 SING N N 92 TKD C28 H49 SING N N 93 TKD C28 H50 SING N N 94 TKD O01 H51 SING N N 95 TKD O02 H52 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TKD SMILES ACDLabs 12.01 "OC6C(=C)\C(O)C/C(=C\C=C4/CCCC5(C)C(C(C)CC#CC(O)CC13CC2CC(C1)CC(C2)C3)CCC45)C6" TKD InChI InChI 1.03 "InChI=1S/C36H52O3/c1-23(6-4-8-30(37)22-36-19-26-14-27(20-36)16-28(15-26)21-36)31-11-12-32-29(7-5-13-35(31,32)3)10-9-25-17-33(38)24(2)34(39)18-25/h9-10,23,26-28,30-34,37-39H,2,5-7,11-22H2,1,3H3/b29-10+/t23-,26-,27+,28-,30-,31-,32+,33-,34-,35-,36-/m1/s1" TKD InChIKey InChI 1.03 UFJLHOSCLNTAFF-OLECLGHFSA-N TKD SMILES_CANONICAL CACTVS 3.370 "C[C@H](CC#C[C@@H](O)CC12CC3CC(CC(C3)C1)C2)[C@H]4CC[C@H]5/C(CCC[C@]45C)=C/C=C6C[C@@H](O)C(=C)[C@H](O)C6" TKD SMILES CACTVS 3.370 "C[CH](CC#C[CH](O)CC12CC3CC(CC(C3)C1)C2)[CH]4CC[CH]5C(CCC[C]45C)=CC=C6C[CH](O)C(=C)[CH](O)C6" TKD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](CC#C[C@H](CC12CC3CC(C1)CC(C3)C2)O)[C@H]4CC[C@@H]\5[C@@]4(CCC/C5=C\C=C6C[C@H](C(=C)[C@@H](C6)O)O)C" TKD SMILES "OpenEye OEToolkits" 1.7.6 "CC(CC#CC(CC12CC3CC(C1)CC(C3)C2)O)C4CCC5C4(CCCC5=CC=C6CC(C(=C)C(C6)O)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TKD "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3R,7E,17beta)-17-{(2R,6S)-6-hydroxy-7-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]hept-4-yn-2-yl}-2-methylidene-9,10-secoestra-5,7-diene-1,3-diol" TKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3R)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2R,6S)-7-(1-adamantyl)-6-oxidanyl-hept-4-yn-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-2-methylidene-cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TKD "Create component" 2012-06-07 PDBJ TKD "Initial release" 2013-06-12 RCSB #