data_TKL # _chem_comp.id TKL _chem_comp.name "(2S)-2-{4-[(1S)-1,5-diaminopentyl]-1H-1,2,3-triazol-1-yl}-4-methylpentanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H25 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-07-29 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 283.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TKL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2AG3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TKL O O O 0 1 N N N Y N Y 11.527 2.011 28.660 -2.416 -2.188 -0.497 O TKL 1 TKL C C C 0 1 N N N Y N Y 11.545 2.615 29.735 -3.224 -1.325 -0.244 C TKL 2 TKL CA CA C 0 1 N N S Y N N 12.839 2.720 30.537 -2.796 -0.087 0.501 CA TKL 3 TKL CB CB C 0 1 N N N N N N 12.765 1.971 31.867 -3.065 1.147 -0.363 CB TKL 4 TKL CG CG C 0 1 N N N N N N 14.084 1.474 32.424 -4.572 1.302 -0.575 CG TKL 5 TKL CD1 CD1 C 0 1 N N N N N N 14.784 0.327 31.755 -5.248 1.592 0.767 CD1 TKL 6 TKL CD2 CD2 C 0 1 N N N N N N 13.744 1.060 33.826 -4.835 2.460 -1.539 CD2 TKL 7 TKL NT1 NT1 N 0 1 Y N N Y N N 13.396 4.106 30.619 -1.364 -0.169 0.802 NT1 TKL 8 TKL NT2 NT2 N 0 1 Y N N N N N 13.589 4.743 29.459 -0.791 0.276 1.865 NT2 TKL 9 TKL NT3 NT3 N 0 1 Y N N N N N 13.954 5.924 29.651 0.473 0.043 1.818 NT3 TKL 10 TKL CT4 CT4 C 0 1 Y N N Y N N 14.153 5.970 30.988 0.756 -0.585 0.671 CT4 TKL 11 TKL CT5 CT5 C 0 1 Y N N Y N N 13.727 4.873 31.586 -0.419 -0.731 0.014 CT5 TKL 12 TKL CT6 CT6 C 0 1 N N S Y N N 14.708 7.218 31.567 2.113 -1.045 0.206 CT6 TKL 13 TKL N N N 0 1 N N N Y Y N 13.966 7.313 32.774 2.007 -1.582 -1.158 N TKL 14 TKL CI CI C 0 1 N N N N N N 16.241 7.253 31.860 3.083 0.138 0.214 CI TKL 15 TKL CJ CJ C 0 1 N N N N N N 16.804 8.619 32.419 4.489 -0.353 -0.139 CJ TKL 16 TKL CK CK C 0 1 N N N N N N 17.387 9.608 31.380 5.459 0.830 -0.131 CK TKL 17 TKL CL CL C 0 1 N N N N N N 17.174 11.130 31.546 6.864 0.340 -0.483 CL TKL 18 TKL NZ NZ N 0 1 N N N N N N 16.775 11.824 30.267 7.796 1.475 -0.475 NZ TKL 19 TKL OXT OXT O 0 1 N Y N Y N Y 10.681 3.051 30.094 -4.501 -1.467 -0.632 OXT TKL 20 TKL HA H2 H 0 1 N N N Y N N 13.575 2.156 29.945 -3.359 -0.009 1.431 H2 TKL 21 TKL H3 H3 H 0 1 N N N N N N 12.320 2.648 32.610 -2.675 2.033 0.137 H3 TKL 22 TKL H4 H4 H 0 1 N N N N N N 12.109 1.099 31.726 -2.573 1.028 -1.329 H4 TKL 23 TKL H5 H5 H 0 1 N N N N N N 14.779 2.325 32.472 -4.977 0.381 -0.994 H5 TKL 24 TKL H6 H6 H 0 1 N N N N N N 15.718 0.104 32.291 -4.843 2.513 1.186 H6 TKL 25 TKL H7 H7 H 0 1 N N N N N N 14.133 -0.559 31.770 -6.322 1.703 0.617 H7 TKL 26 TKL H8 H8 H 0 1 N N N N N N 15.014 0.595 30.713 -5.061 0.767 1.454 H8 TKL 27 TKL H9 H9 H 0 1 N N N N N N 13.229 1.886 34.338 -4.354 2.254 -2.495 H9 TKL 28 TKL H10 H10 H 0 1 N N N N N N 13.086 0.179 33.799 -5.909 2.571 -1.689 H10 TKL 29 TKL H11 H11 H 0 1 N N N N N N 14.668 0.811 34.369 -4.430 3.381 -1.120 H11 TKL 30 TKL H12 H12 H 0 1 N N N Y N N 13.671 4.671 32.645 -0.570 -1.199 -0.947 H12 TKL 31 TKL H13 H13 H 0 1 N N N Y N N 14.465 8.063 30.906 2.482 -1.823 0.874 H13 TKL 32 TKL H HN1 H 0 1 N N N Y Y N 14.248 8.131 33.275 1.666 -0.880 -1.797 HN1 TKL 33 TKL H2 HN2 H 0 1 N Y N Y Y N 12.991 7.372 32.562 2.891 -1.956 -1.469 HN2 TKL 34 TKL H17 H17 H 0 1 N N N N N N 16.461 6.469 32.600 2.761 0.877 -0.521 H17 TKL 35 TKL H18 H18 H 0 1 N N N N N N 16.769 7.029 30.921 3.094 0.592 1.205 H18 TKL 36 TKL H19 H19 H 0 1 N N N N N N 17.602 8.381 33.138 4.810 -1.092 0.595 H19 TKL 37 TKL H20 H20 H 0 1 N N N N N N 15.981 9.130 32.941 4.477 -0.807 -1.130 H20 TKL 38 TKL H21 H21 H 0 1 N N N N N N 16.956 9.333 30.406 5.137 1.569 -0.865 H21 TKL 39 TKL H22 H22 H 0 1 N N N N N N 18.474 9.441 31.361 5.470 1.284 0.860 H22 TKL 40 TKL H23 H23 H 0 1 N N N N N N 18.113 11.576 31.906 7.186 -0.399 0.251 H23 TKL 41 TKL H24 H24 H 0 1 N N N N N N 16.382 11.292 32.292 6.853 -0.114 -1.474 H24 TKL 42 TKL H25 H25 H 0 1 N N N N N N 16.653 12.801 30.441 7.777 1.953 0.414 H25 TKL 43 TKL H26 H26 H 0 1 N N N N N N 17.490 11.695 29.580 8.732 1.177 -0.705 H26 TKL 44 TKL HXT HXT H 0 1 N Y N Y N Y 9.970 2.896 29.483 -4.727 -2.277 -1.110 HXT TKL 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TKL O C DOUB N N 1 TKL NT2 NT3 DOUB Y N 2 TKL NT2 NT1 SING Y N 3 TKL NT3 CT4 SING Y N 4 TKL C CA SING N N 5 TKL NZ CL SING N N 6 TKL CA NT1 SING N N 7 TKL CA CB SING N N 8 TKL NT1 CT5 SING Y N 9 TKL CT4 CT6 SING N N 10 TKL CT4 CT5 DOUB Y N 11 TKL CK CL SING N N 12 TKL CK CJ SING N N 13 TKL CT6 CI SING N N 14 TKL CT6 N SING N N 15 TKL CD1 CG SING N N 16 TKL CI CJ SING N N 17 TKL CB CG SING N N 18 TKL CG CD2 SING N N 19 TKL C OXT SING N N 20 TKL CA HA SING N N 21 TKL CB H3 SING N N 22 TKL CB H4 SING N N 23 TKL CG H5 SING N N 24 TKL CD1 H6 SING N N 25 TKL CD1 H7 SING N N 26 TKL CD1 H8 SING N N 27 TKL CD2 H9 SING N N 28 TKL CD2 H10 SING N N 29 TKL CD2 H11 SING N N 30 TKL CT5 H12 SING N N 31 TKL CT6 H13 SING N N 32 TKL N H SING N N 33 TKL N H2 SING N N 34 TKL CI H17 SING N N 35 TKL CI H18 SING N N 36 TKL CJ H19 SING N N 37 TKL CJ H20 SING N N 38 TKL CK H21 SING N N 39 TKL CK H22 SING N N 40 TKL CL H23 SING N N 41 TKL CL H24 SING N N 42 TKL NZ H25 SING N N 43 TKL NZ H26 SING N N 44 TKL OXT HXT SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TKL SMILES ACDLabs 12.01 "O=C(C(n1cc(nn1)C(CCCCN)N)CC(C)C)O" TKL InChI InChI 1.03 "InChI=1S/C13H25N5O2/c1-9(2)7-12(13(19)20)18-8-11(16-17-18)10(15)5-3-4-6-14/h8-10,12H,3-7,14-15H2,1-2H3,(H,19,20)/t10-,12-/m0/s1" TKL InChIKey InChI 1.03 WSJIJIRRZCOJIG-JQWIXIFHSA-N TKL SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](n1cc(nn1)[C@@H](N)CCCCN)C(O)=O" TKL SMILES CACTVS 3.385 "CC(C)C[CH](n1cc(nn1)[CH](N)CCCCN)C(O)=O" TKL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)O)n1cc(nn1)[C@H](CCCCN)N" TKL SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)O)n1cc(nn1)C(CCCCN)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TKL "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-{4-[(1S)-1,5-diaminopentyl]-1H-1,2,3-triazol-1-yl}-4-methylpentanoic acid" TKL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[4-[(1S)-1,5-bis(azanyl)pentyl]-1,2,3-triazol-1-yl]-4-methyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TKL "Create component" 2005-07-29 RCSB TKL "Other modification" 2018-02-26 RCSB TKL "Modify backbone" 2023-11-03 PDBE #