data_TKW # _chem_comp.id TKW _chem_comp.name ;5-hydroxycytidine 5'-(dihydrogen phosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-10-18 _chem_comp.pdbx_modified_date 2012-11-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 339.196 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TKW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4HKP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TKW OAF OAF O 0 1 N N N 26.622 -13.053 12.970 -4.158 1.861 1.146 OAF TKW 1 TKW PAV PAV P 0 1 N N N 25.546 -13.162 14.151 -4.383 1.129 -0.121 PAV TKW 2 TKW OAG OAG O 0 1 N N N 26.069 -14.067 15.361 -5.606 0.099 0.064 OAG TKW 3 TKW OAH OAH O 0 1 N N N 24.110 -13.606 13.657 -4.735 2.177 -1.291 OAH TKW 4 TKW "O5'" "O5'" O 0 1 N N N 25.425 -11.677 14.777 -3.050 0.314 -0.513 "O5'" TKW 5 TKW "C5'" "C5'" C 0 1 N N N 24.283 -10.880 14.438 -2.420 -0.618 0.368 "C5'" TKW 6 TKW "C4'" "C4'" C 0 1 N N R 24.447 -9.618 15.268 -1.185 -1.210 -0.313 "C4'" TKW 7 TKW "O4'" "O4'" O 0 1 N N N 23.795 -8.524 14.584 -0.153 -0.208 -0.441 "O4'" TKW 8 TKW "C3'" "C3'" C 0 1 N N S 23.753 -9.835 16.586 -0.559 -2.312 0.570 "C3'" TKW 9 TKW "O3'" "O3'" O 0 1 N N N 24.449 -9.116 17.658 -0.976 -3.605 0.128 "O3'" TKW 10 TKW "C2'" "C2'" C 0 1 N N R 22.335 -9.296 16.322 0.962 -2.135 0.368 "C2'" TKW 11 TKW "O2'" "O2'" O 0 1 N N N 21.800 -8.821 17.538 1.532 -3.314 -0.204 "O2'" TKW 12 TKW "C1'" "C1'" C 0 1 N N R 22.566 -8.188 15.301 1.076 -0.948 -0.613 "C1'" TKW 13 TKW NAU NAU N 0 1 N N N 21.499 -7.962 14.266 2.228 -0.110 -0.270 NAU TKW 14 TKW CAP CAP C 0 1 N N N 20.979 -8.863 13.396 2.275 0.505 0.926 CAP TKW 15 TKW OAB OAB O 0 1 N N N 21.322 -10.039 13.378 1.355 0.357 1.713 OAB TKW 16 TKW NAK NAK N 0 1 N N N 20.041 -8.493 12.503 3.309 1.272 1.266 NAK TKW 17 TKW CAN CAN C 0 1 N N N 19.614 -7.221 12.441 4.324 1.452 0.431 CAN TKW 18 TKW NAA NAA N 0 1 N N N 18.706 -6.795 11.585 5.387 2.247 0.795 NAA TKW 19 TKW CAO CAO C 0 1 N N N 20.131 -6.278 13.300 4.308 0.821 -0.833 CAO TKW 20 TKW OAC OAC O 0 1 N N N 19.671 -5.015 13.201 5.341 0.992 -1.705 OAC TKW 21 TKW CAI CAI C 0 1 N N N 21.075 -6.650 14.190 3.251 0.038 -1.163 CAI TKW 22 TKW H1 H1 H 0 1 N N N 26.941 -14.387 15.164 -5.810 -0.416 -0.729 H1 TKW 23 TKW H2 H2 H 0 1 N N N 24.125 -13.738 12.716 -5.528 2.704 -1.122 H2 TKW 24 TKW H3 H3 H 0 1 N N N 24.279 -10.642 13.364 -2.120 -0.107 1.283 H3 TKW 25 TKW H4 H4 H 0 1 N N N 23.351 -11.402 14.702 -3.120 -1.418 0.611 H4 TKW 26 TKW H5 H5 H 0 1 N N N 25.515 -9.407 15.429 -1.449 -1.612 -1.292 H5 TKW 27 TKW H6 H6 H 0 1 N N N 23.702 -10.910 16.812 -0.828 -2.161 1.616 H6 TKW 28 TKW H7 H7 H 0 1 N N N 24.000 -9.263 18.482 -0.612 -4.334 0.648 H7 TKW 29 TKW H8 H8 H 0 1 N N N 21.710 -10.088 15.884 1.448 -1.898 1.315 H8 TKW 30 TKW H9 H9 H 0 1 N N N 21.676 -9.549 18.136 1.435 -4.104 0.344 H9 TKW 31 TKW H10 H10 H 0 1 N N N 22.721 -7.247 15.849 1.161 -1.309 -1.638 H10 TKW 32 TKW H11 H11 H 0 1 N N N 18.295 -7.433 10.934 5.395 2.678 1.664 H11 TKW 33 TKW H12 H12 H 0 1 N N N 18.428 -5.834 11.587 6.128 2.376 0.183 H12 TKW 34 TKW H13 H13 H 0 1 N N N 20.105 -4.468 13.845 6.046 1.564 -1.372 H13 TKW 35 TKW H14 H14 H 0 1 N N N 21.504 -5.912 14.851 3.214 -0.456 -2.123 H14 TKW 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TKW NAA CAN SING N N 1 TKW CAN NAK DOUB N N 2 TKW CAN CAO SING N N 3 TKW NAK CAP SING N N 4 TKW OAF PAV DOUB N N 5 TKW OAC CAO SING N N 6 TKW CAO CAI DOUB N N 7 TKW OAB CAP DOUB N N 8 TKW CAP NAU SING N N 9 TKW OAH PAV SING N N 10 TKW PAV "O5'" SING N N 11 TKW PAV OAG SING N N 12 TKW CAI NAU SING N N 13 TKW NAU "C1'" SING N N 14 TKW "C5'" "O5'" SING N N 15 TKW "C5'" "C4'" SING N N 16 TKW "O4'" "C4'" SING N N 17 TKW "O4'" "C1'" SING N N 18 TKW "C4'" "C3'" SING N N 19 TKW "C1'" "C2'" SING N N 20 TKW "C2'" "C3'" SING N N 21 TKW "C2'" "O2'" SING N N 22 TKW "C3'" "O3'" SING N N 23 TKW OAG H1 SING N N 24 TKW OAH H2 SING N N 25 TKW "C5'" H3 SING N N 26 TKW "C5'" H4 SING N N 27 TKW "C4'" H5 SING N N 28 TKW "C3'" H6 SING N N 29 TKW "O3'" H7 SING N N 30 TKW "C2'" H8 SING N N 31 TKW "O2'" H9 SING N N 32 TKW "C1'" H10 SING N N 33 TKW NAA H11 SING N N 34 TKW NAA H12 SING N N 35 TKW OAC H13 SING N N 36 TKW CAI H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TKW SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(O)=C1)C(O)C2O" TKW InChI InChI 1.03 "InChI=1S/C9H14N3O9P/c10-7-3(13)1-12(9(16)11-7)8-6(15)5(14)4(21-8)2-20-22(17,18)19/h1,4-6,8,13-15H,2H2,(H2,10,11,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1" TKW InChIKey InChI 1.03 QONOHPMEMVHOPP-UAKXSSHOSA-N TKW SMILES_CANONICAL CACTVS 3.370 "NC1=NC(=O)N(C=C1O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" TKW SMILES CACTVS 3.370 "NC1=NC(=O)N(C=C1O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" TKW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)O" TKW SMILES "OpenEye OEToolkits" 1.7.6 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TKW "SYSTEMATIC NAME" ACDLabs 12.01 ;5-hydroxycytidine 5'-(dihydrogen phosphate) ; TKW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(4-azanyl-5-oxidanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TKW "Create component" 2012-10-18 RCSB TKW "Initial release" 2012-11-09 RCSB #