data_TL1
#
_chem_comp.id TL1
_chem_comp.name "2,5-BIS-O-{3-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H22 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
;2,5-O,O-BIS-(3',3"-AMIDINOPHENYL)-1,4:3,6-DIANHYDRO-D-SORBITOL
;
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-08
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.413
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TL1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y59
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TL1 N1 N1 N 0 1 N N N 46.576 18.441 54.201 6.069 2.563 1.176 N1 TL1 1
TL1 C1 C1 C 0 1 N N N 45.706 18.268 53.240 6.650 1.442 0.858 C1 TL1 2
TL1 N2 N2 N 0 1 N N N 45.230 16.972 53.127 8.025 1.372 0.797 N2 TL1 3
TL1 C2 C2 C 0 1 Y N N 45.175 19.324 52.356 5.834 0.242 0.561 C2 TL1 4
TL1 C3 C3 C 0 1 Y N N 44.626 19.040 51.067 6.454 -0.960 0.220 C3 TL1 5
TL1 C4 C4 C 0 1 Y N N 44.146 20.065 50.237 5.691 -2.075 -0.056 C4 TL1 6
TL1 C5 C5 C 0 1 Y N N 44.186 21.432 50.622 4.311 -2.007 0.004 C5 TL1 7
TL1 C6 C6 C 0 1 Y N N 44.709 21.729 51.914 3.685 -0.815 0.342 C6 TL1 8
TL1 O1 O1 O 0 1 N N N 44.643 23.027 52.405 2.329 -0.752 0.399 O1 TL1 9
TL1 C7 C7 C 0 1 N N R 43.819 24.156 51.872 1.860 -0.712 -0.950 C7 TL1 10
TL1 C8 C8 C 0 1 N N N 44.172 25.507 52.614 1.742 0.749 -1.437 C8 TL1 11
TL1 O2 O2 O 0 1 N N N 42.969 26.324 52.434 0.368 1.112 -1.186 O2 TL1 12
TL1 C9 C9 C 0 1 N N R 41.832 25.457 52.283 -0.411 -0.046 -1.549 C9 TL1 13
TL1 C10 C10 C 0 1 N N S 40.992 25.572 53.594 -1.696 -0.067 -0.693 C10 TL1 14
TL1 O3 O3 O 0 1 N N N 39.593 25.200 53.310 -2.848 -0.228 -1.524 O3 TL1 15
TL1 C11 C11 C 0 1 Y N N 38.691 25.089 54.342 -3.879 0.390 -0.889 C11 TL1 16
TL1 C12 C12 C 0 1 Y N N 37.766 24.018 54.278 -3.989 1.773 -0.928 C12 TL1 17
TL1 C13 C13 C 0 1 Y N N 36.789 23.788 55.260 -5.035 2.406 -0.284 C13 TL1 18
TL1 C14 C14 C 0 1 Y N N 36.755 24.686 56.340 -5.978 1.666 0.402 C14 TL1 19
TL1 C15 C15 C 0 1 Y N N 37.602 25.811 56.349 -5.875 0.276 0.445 C15 TL1 20
TL1 C16 C16 C 0 1 N N N 37.655 26.692 57.572 -6.884 -0.521 1.180 C16 TL1 21
TL1 N3 N3 N 0 1 N N N 38.815 27.149 57.982 -6.787 -1.819 1.220 N3 TL1 22
TL1 N4 N4 N 0 1 N N N 36.466 26.980 58.192 -7.927 0.112 1.823 N4 TL1 23
TL1 C17 C17 C 0 1 Y N N 38.727 25.952 55.450 -4.822 -0.362 -0.209 C17 TL1 24
TL1 C18 C18 C 0 1 N N N 41.704 24.571 54.537 -1.517 -1.292 0.230 C18 TL1 25
TL1 O4 O4 O 0 1 N N N 42.224 23.504 53.642 -0.089 -1.486 0.312 O4 TL1 26
TL1 C19 C19 C 0 1 N N R 42.308 23.995 52.274 0.420 -1.261 -1.038 C19 TL1 27
TL1 C20 C20 C 0 1 Y N N 45.254 20.690 52.745 4.443 0.309 0.627 C20 TL1 28
TL1 HN1 HN1 H 0 1 N N N 47.032 17.921 53.452 5.101 2.612 1.219 HN1 TL1 29
TL1 HN21 1HN2 H 0 0 N N N 44.845 16.655 54.017 8.559 2.157 0.992 HN21 TL1 30
TL1 HN22 2HN2 H 0 0 N N N 44.552 16.837 52.378 8.458 0.536 0.564 HN22 TL1 31
TL1 H3 H3 H 0 1 N N N 44.571 18.000 50.703 7.531 -1.017 0.172 H3 TL1 32
TL1 H4 H4 H 0 1 N N N 43.726 19.789 49.255 6.172 -3.005 -0.321 H4 TL1 33
TL1 H5 H5 H 0 1 N N N 43.827 22.228 49.948 3.718 -2.883 -0.213 H5 TL1 34
TL1 H7 H7 H 0 1 N N N 44.009 24.159 50.773 2.525 -1.279 -1.601 H7 TL1 35
TL1 H81 1H8 H 0 1 N N N 45.114 25.991 52.267 2.414 1.393 -0.871 H81 TL1 36
TL1 H82 2H8 H 0 1 N N N 44.489 25.381 53.676 1.962 0.812 -2.503 H82 TL1 37
TL1 H9 H9 H 0 1 N N N 41.276 25.728 51.355 -0.617 -0.096 -2.618 H9 TL1 38
TL1 H10 H10 H 0 1 N N N 40.940 26.593 54.039 -1.776 0.847 -0.104 H10 TL1 39
TL1 H12 H12 H 0 1 N N N 37.809 23.327 53.419 -3.254 2.357 -1.462 H12 TL1 40
TL1 H13 H13 H 0 1 N N N 36.083 22.944 55.187 -5.116 3.483 -0.316 H13 TL1 41
TL1 H14 H14 H 0 1 N N N 36.064 24.508 57.181 -6.794 2.164 0.905 H14 TL1 42
TL1 HN3 HN3 H 0 1 N N N 39.573 26.546 57.663 -7.448 -2.340 1.701 HN3 TL1 43
TL1 HN41 1HN4 H 0 0 N N N 35.985 26.111 58.422 -8.588 -0.410 2.304 HN41 TL1 44
TL1 HN42 2HN4 H 0 0 N N N 36.502 27.576 59.019 -7.999 1.078 1.794 HN42 TL1 45
TL1 H17 H17 H 0 1 N N N 39.554 26.667 55.599 -4.738 -1.438 -0.179 H17 TL1 46
TL1 H181 1H18 H 0 0 N N N 41.059 24.193 55.364 -1.929 -1.086 1.218 H181 TL1 47
TL1 H182 2H18 H 0 0 N N N 42.483 25.036 55.185 -1.995 -2.169 -0.206 H182 TL1 48
TL1 H19 H19 H 0 1 N N N 41.736 23.306 51.610 0.335 -2.144 -1.671 H19 TL1 49
TL1 H20 H20 H 0 1 N N N 45.743 20.946 53.700 3.957 1.237 0.891 H20 TL1 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TL1 N1 C1 DOUB N N 1
TL1 N1 HN1 SING N N 2
TL1 C1 N2 SING N N 3
TL1 C1 C2 SING N N 4
TL1 N2 HN21 SING N N 5
TL1 N2 HN22 SING N N 6
TL1 C2 C3 DOUB Y N 7
TL1 C2 C20 SING Y N 8
TL1 C3 C4 SING Y N 9
TL1 C3 H3 SING N N 10
TL1 C4 C5 DOUB Y N 11
TL1 C4 H4 SING N N 12
TL1 C5 C6 SING Y N 13
TL1 C5 H5 SING N N 14
TL1 C6 O1 SING N N 15
TL1 C6 C20 DOUB Y N 16
TL1 O1 C7 SING N N 17
TL1 C7 C8 SING N N 18
TL1 C7 C19 SING N N 19
TL1 C7 H7 SING N N 20
TL1 C8 O2 SING N N 21
TL1 C8 H81 SING N N 22
TL1 C8 H82 SING N N 23
TL1 O2 C9 SING N N 24
TL1 C9 C10 SING N N 25
TL1 C9 C19 SING N N 26
TL1 C9 H9 SING N N 27
TL1 C10 O3 SING N N 28
TL1 C10 C18 SING N N 29
TL1 C10 H10 SING N N 30
TL1 O3 C11 SING N N 31
TL1 C11 C12 DOUB Y N 32
TL1 C11 C17 SING Y N 33
TL1 C12 C13 SING Y N 34
TL1 C12 H12 SING N N 35
TL1 C13 C14 DOUB Y N 36
TL1 C13 H13 SING N N 37
TL1 C14 C15 SING Y N 38
TL1 C14 H14 SING N N 39
TL1 C15 C16 SING N N 40
TL1 C15 C17 DOUB Y N 41
TL1 C16 N3 DOUB N N 42
TL1 C16 N4 SING N N 43
TL1 N3 HN3 SING N N 44
TL1 N4 HN41 SING N N 45
TL1 N4 HN42 SING N N 46
TL1 C17 H17 SING N N 47
TL1 C18 O4 SING N N 48
TL1 C18 H181 SING N N 49
TL1 C18 H182 SING N N 50
TL1 O4 C19 SING N N 51
TL1 C19 H19 SING N N 52
TL1 C20 H20 SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TL1 SMILES ACDLabs 10.04 "O(c1cc(C(=[N@H])N)ccc1)C3C4OCC(Oc2cc(C(=[N@H])N)ccc2)C4OC3"
TL1 SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1cccc(O[C@@H]2CO[C@@H]3[C@H](CO[C@H]23)Oc4cccc(c4)C(N)=N)c1"
TL1 SMILES CACTVS 3.341 "NC(=N)c1cccc(O[CH]2CO[CH]3[CH](CO[CH]23)Oc4cccc(c4)C(N)=N)c1"
TL1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)O[C@@H]2CO[C@H]3[C@@H]2OC[C@@H]3Oc4cccc(c4)C(=N)N)C(=N)N"
TL1 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)OC2COC3C2OCC3Oc4cccc(c4)C(=N)N)C(=N)N"
TL1 InChI InChI 1.03 "InChI=1S/C20H22N4O4/c21-19(22)11-3-1-5-13(7-11)27-15-9-25-18-16(10-26-17(15)18)28-14-6-2-4-12(8-14)20(23)24/h1-8,15-18H,9-10H2,(H3,21,22)(H3,23,24)/t15-,16+,17-,18-/m1/s1"
TL1 InChIKey InChI 1.03 IBIUTOFGXGGVKQ-XMTFNYHQSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TL1 "SYSTEMATIC NAME" ACDLabs 10.04 "1,4:3,6-dianhydro-2,5-bis-O-(3-carbamimidoylphenyl)-D-glucitol"
TL1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[[(3R,3aR,6S,6aR)-6-(3-carbamimidoylphenoxy)-2,3,3a,5,6,6a-hexahydrofuro[4,5-b]furan-3-yl]oxy]benzenecarboximidamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TL1 "Create component" 2004-12-08 RCSB
TL1 "Modify descriptor" 2011-06-04 RCSB
TL1 "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TL1
_pdbx_chem_comp_synonyms.name
;2,5-O,O-BIS-(3',3"-AMIDINOPHENYL)-1,4:3,6-DIANHYDRO-D-SORBITOL
;
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##