data_TL2
#
_chem_comp.id TL2
_chem_comp.name "2-O-{4-[AMINO(IMINO)METHYL]PHENYL}-5-O-{3-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H22 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2-O-(4'-AMIDINOPHENYL)-5-O-(3''-AMIDINOPHENYL)-1,4:3,6-DIANHYDRO-D-SORBITOL"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.413
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TL2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y5A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TL2 N N N 0 1 N N N 12.082 28.626 40.754 -7.413 2.268 -0.850 N TL2 1
TL2 C1 C1 C 0 1 N N N 11.459 28.397 39.528 -7.051 1.016 -0.834 C1 TL2 2
TL2 C2 C2 C 0 1 Y N N 12.266 27.635 38.460 -5.777 0.622 -0.193 C2 TL2 3
TL2 C3 C3 C 0 1 Y N N 11.666 27.308 37.209 -4.962 1.591 0.395 C3 TL2 4
TL2 C4 C4 C 0 1 Y N N 12.419 26.650 36.216 -3.776 1.220 0.991 C4 TL2 5
TL2 C5 C5 C 0 1 Y N N 13.641 27.326 38.682 -5.391 -0.719 -0.169 C5 TL2 6
TL2 C6 C6 C 0 1 Y N N 14.387 26.622 37.700 -4.201 -1.081 0.424 C6 TL2 7
TL2 C7 C7 C 0 1 Y N N 13.778 26.326 36.442 -3.392 -0.115 1.008 C7 TL2 8
TL2 O8 O8 O 0 1 N N N 14.432 25.634 35.391 -2.223 -0.476 1.596 O8 TL2 9
TL2 C9 C9 C 0 1 N N S 15.469 24.641 35.764 -1.278 -0.686 0.544 C9 TL2 10
TL2 C10 C10 C 0 1 N N N 15.014 23.539 36.735 -0.481 0.608 0.268 C10 TL2 11
TL2 O11 O11 O 0 1 N N N 14.319 22.574 35.880 0.856 0.158 -0.040 O11 TL2 12
TL2 C11 C11 C 0 1 N N R 15.847 23.820 34.549 -0.208 -1.710 0.975 C11 TL2 13
TL2 C12 C12 C 0 1 N N R 14.745 22.777 34.515 1.128 -0.912 0.888 C12 TL2 14
TL2 C13 C13 C 0 1 N N R 15.500 21.534 33.974 2.123 -1.894 0.233 C13 TL2 15
TL2 O14 O14 O 0 1 N N N 14.863 20.342 34.576 2.590 -1.375 -1.014 O14 TL2 16
TL2 O15 O15 O 0 1 N N N 17.107 23.125 34.690 -0.074 -2.730 -0.057 O15 TL2 17
TL2 C16 C16 C 0 1 Y N N 13.206 19.974 32.726 4.951 -1.610 -0.829 C16 TL2 18
TL2 C17 C17 C 0 1 N N N 16.897 21.699 34.620 1.296 -3.180 0.011 C17 TL2 19
TL2 C18 C18 C 0 1 Y N N 13.724 19.699 34.044 3.809 -0.822 -0.776 C18 TL2 20
TL2 C20 C20 C 0 1 Y N N 13.153 18.701 34.866 3.911 0.529 -0.488 C20 TL2 21
TL2 C21 C21 C 0 1 N N N 11.230 17.015 35.323 5.279 2.533 0.076 C21 TL2 22
TL2 N22 N22 N 0 1 N N N 11.967 16.281 36.247 4.212 3.277 0.126 N22 TL2 23
TL2 N23 N23 N 0 1 N N N 9.972 16.796 35.273 6.517 3.088 0.317 N23 TL2 24
TL2 C24 C24 C 0 1 Y N N 12.054 19.271 32.302 6.192 -1.052 -0.588 C24 TL2 25
TL2 C25 C25 C 0 1 Y N N 11.425 18.322 33.121 6.304 0.292 -0.294 C25 TL2 26
TL2 C26 C26 C 0 1 Y N N 11.938 18.031 34.435 5.162 1.091 -0.240 C26 TL2 27
TL2 N27 N27 N 0 1 N N N 10.289 28.841 39.356 -7.855 0.059 -1.414 N27 TL2 28
TL2 HN HN H 0 1 N N N 12.455 28.315 39.857 -8.248 2.526 -1.270 HN TL2 29
TL2 H3 H3 H 0 1 N N N 10.613 27.566 37.008 -5.259 2.629 0.382 H3 TL2 30
TL2 H4 H4 H 0 1 N N N 11.942 26.387 35.257 -3.144 1.969 1.446 H4 TL2 31
TL2 H5 H5 H 0 1 N N N 14.131 27.634 39.621 -6.020 -1.470 -0.623 H5 TL2 32
TL2 H6 H6 H 0 1 N N N 15.424 26.310 37.911 -3.900 -2.118 0.439 H6 TL2 33
TL2 H9 H9 H 0 1 N N N 16.268 25.273 36.217 -1.785 -1.021 -0.361 H9 TL2 34
TL2 H101 1H10 H 0 0 N N N 14.408 23.908 37.595 -0.906 1.142 -0.581 H101 TL2 35
TL2 H102 2H10 H 0 0 N N N 15.836 23.100 37.346 -0.472 1.244 1.153 H102 TL2 36
TL2 H11 H11 H 0 1 N N N 15.954 24.464 33.645 -0.395 -2.134 1.962 H11 TL2 37
TL2 H12 H12 H 0 1 N N N 13.844 23.027 33.907 1.470 -0.551 1.858 H12 TL2 38
TL2 H13 H13 H 0 1 N N N 15.514 21.437 32.863 2.961 -2.091 0.902 H13 TL2 39
TL2 H16 H16 H 0 1 N N N 13.682 20.708 32.055 4.869 -2.662 -1.058 H16 TL2 40
TL2 H171 1H17 H 0 0 N N N 17.709 21.148 34.090 1.585 -3.659 -0.925 H171 TL2 41
TL2 H172 2H17 H 0 0 N N N 17.007 21.177 35.599 1.429 -3.866 0.847 H172 TL2 42
TL2 H20 H20 H 0 1 N N N 13.644 18.451 35.822 3.024 1.143 -0.448 H20 TL2 43
TL2 H22 H22 H 0 1 N N N 11.771 15.544 35.570 4.288 4.222 0.333 H22 TL2 44
TL2 H231 1H23 H 0 0 N N N 9.569 16.919 36.202 7.312 2.534 0.279 H231 TL2 45
TL2 H232 2H23 H 0 0 N N N 9.432 17.334 34.596 6.594 4.032 0.523 H232 TL2 46
TL2 H24 H24 H 0 1 N N N 11.633 19.469 31.302 7.077 -1.669 -0.629 H24 TL2 47
TL2 H25 H25 H 0 1 N N N 10.530 17.807 32.733 7.276 0.725 -0.105 H25 TL2 48
TL2 H271 1H27 H 0 0 N N N 10.282 29.842 39.550 -7.586 -0.873 -1.401 H271 TL2 49
TL2 H272 2H27 H 0 0 N N N 9.833 28.674 38.459 -8.692 0.316 -1.830 H272 TL2 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TL2 N C1 DOUB N E 1
TL2 N HN SING N N 2
TL2 C1 C2 SING N N 3
TL2 C1 N27 SING N N 4
TL2 C2 C3 DOUB Y N 5
TL2 C2 C5 SING Y N 6
TL2 C3 C4 SING Y N 7
TL2 C3 H3 SING N N 8
TL2 C4 C7 DOUB Y N 9
TL2 C4 H4 SING N N 10
TL2 C5 C6 DOUB Y N 11
TL2 C5 H5 SING N N 12
TL2 C6 C7 SING Y N 13
TL2 C6 H6 SING N N 14
TL2 C7 O8 SING N N 15
TL2 O8 C9 SING N N 16
TL2 C9 C10 SING N N 17
TL2 C9 C11 SING N N 18
TL2 C9 H9 SING N N 19
TL2 C10 O11 SING N N 20
TL2 C10 H101 SING N N 21
TL2 C10 H102 SING N N 22
TL2 O11 C12 SING N N 23
TL2 C11 C12 SING N N 24
TL2 C11 O15 SING N N 25
TL2 C11 H11 SING N N 26
TL2 C12 C13 SING N N 27
TL2 C12 H12 SING N N 28
TL2 C13 O14 SING N N 29
TL2 C13 C17 SING N N 30
TL2 C13 H13 SING N N 31
TL2 O14 C18 SING N N 32
TL2 O15 C17 SING N N 33
TL2 C16 C18 DOUB Y N 34
TL2 C16 C24 SING Y N 35
TL2 C16 H16 SING N N 36
TL2 C17 H171 SING N N 37
TL2 C17 H172 SING N N 38
TL2 C18 C20 SING Y N 39
TL2 C20 C26 DOUB Y N 40
TL2 C20 H20 SING N N 41
TL2 C21 N22 DOUB N N 42
TL2 C21 N23 SING N N 43
TL2 C21 C26 SING N N 44
TL2 N22 H22 SING N N 45
TL2 N23 H231 SING N N 46
TL2 N23 H232 SING N N 47
TL2 C24 C25 DOUB Y N 48
TL2 C24 H24 SING N N 49
TL2 C25 C26 SING Y N 50
TL2 C25 H25 SING N N 51
TL2 N27 H271 SING N N 52
TL2 N27 H272 SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TL2 SMILES ACDLabs 10.04 "O(c1ccc(C(=[N@H])N)cc1)C3C4OCC(Oc2cc(C(=[N@H])N)ccc2)C4OC3"
TL2 SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(O[C@H]2CO[C@@H]3[C@@H](CO[C@H]23)Oc4cccc(c4)C(N)=N)cc1"
TL2 SMILES CACTVS 3.341 "NC(=N)c1ccc(O[CH]2CO[CH]3[CH](CO[CH]23)Oc4cccc(c4)C(N)=N)cc1"
TL2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1ccc(cc1)O[C@H]2CO[C@H]3[C@@H]2OC[C@H]3Oc4cccc(c4)C(=N)N)/N"
TL2 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cc1)OC2COC3C2OCC3Oc4cccc(c4)C(=N)N)N"
TL2 InChI InChI 1.03 "InChI=1S/C20H22N4O4/c21-19(22)11-4-6-13(7-5-11)27-15-9-25-18-16(10-26-17(15)18)28-14-3-1-2-12(8-14)20(23)24/h1-8,15-18H,9-10H2,(H3,21,22)(H3,23,24)/t15-,16+,17+,18+/m0/s1"
TL2 InChIKey InChI 1.03 DKBAWRNTUZFJKV-BSDSXHPESA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TL2 "SYSTEMATIC NAME" ACDLabs 10.04 "1,4:3,6-dianhydro-5-O-(3-carbamimidoylphenyl)-2-O-(4-carbamimidoylphenyl)-D-glucitol"
TL2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[(3S,3aR,6R,6aR)-6-(3-carbamimidoylphenoxy)-2,3,3a,5,6,6a-hexahydrofuro[4,5-b]furan-3-yl]oxy]benzenecarboximidamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TL2 "Create component" 2004-12-08 RCSB
TL2 "Modify descriptor" 2011-06-04 RCSB
TL2 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TL2
_pdbx_chem_comp_synonyms.name "2-O-(4'-AMIDINOPHENYL)-5-O-(3''-AMIDINOPHENYL)-1,4:3,6-DIANHYDRO-D-SORBITOL"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##