data_TL3
#
_chem_comp.id TL3
_chem_comp.name "2,5-BIS-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H22 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2,5-O,O-BIS-{4',4''-AMIDINOPHENYL}-1,4:3,6-DIANHYDRO-D-SORBITOL"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.413
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TL3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y5B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TL3 N1 N1 N 0 1 N N N 12.062 31.487 25.146 8.326 1.826 0.163 N1 TL3 1
TL3 C1 C1 C 0 1 N N N 12.228 30.188 25.242 7.840 0.621 0.264 C1 TL3 2
TL3 N2 N2 N 0 1 N N N 12.211 29.584 26.479 8.689 -0.465 0.281 N2 TL3 3
TL3 C2 C2 C 0 1 Y N N 12.269 29.257 24.077 6.378 0.418 0.360 C2 TL3 4
TL3 C3 C3 C 0 1 Y N N 13.139 28.085 24.108 5.517 1.517 0.342 C3 TL3 5
TL3 C4 C4 C 0 1 Y N N 13.132 27.219 22.960 4.156 1.324 0.432 C4 TL3 6
TL3 C5 C5 C 0 1 Y N N 12.281 27.549 21.812 3.640 0.039 0.539 C5 TL3 7
TL3 O1 O1 O 0 1 N N N 12.187 26.807 20.650 2.298 -0.147 0.627 O1 TL3 8
TL3 C6 C6 C 0 1 N N R 12.883 25.518 20.569 1.861 -0.613 -0.652 C6 TL3 9
TL3 C7 C7 C 0 1 N N N 12.812 25.197 19.052 1.466 0.577 -1.554 C7 TL3 10
TL3 O2 O2 O 0 1 N N N 11.659 24.337 18.867 0.042 0.722 -1.370 O2 TL3 11
TL3 C8 C8 C 0 1 N N R 11.360 23.665 20.152 -0.483 -0.621 -1.334 C8 TL3 12
TL3 C9 C9 C 0 1 N N S 9.861 23.973 20.450 -1.757 -0.631 -0.462 C9 TL3 13
TL3 O3 O3 O 0 1 N N N 9.309 22.751 21.048 -2.835 -1.260 -1.159 O3 TL3 14
TL3 C10 C10 C 0 1 Y N N 9.060 21.760 20.091 -3.981 -0.696 -0.700 C10 TL3 15
TL3 C11 C11 C 0 1 Y N N 9.029 20.415 20.553 -4.363 0.562 -1.151 C11 TL3 16
TL3 C12 C12 C 0 1 Y N N 8.747 19.383 19.615 -5.526 1.138 -0.687 C12 TL3 17
TL3 C13 C13 C 0 1 Y N N 8.535 19.681 18.219 -6.320 0.456 0.237 C13 TL3 18
TL3 C14 C14 C 0 1 N N N 8.257 18.596 17.247 -7.569 1.072 0.737 C14 TL3 19
TL3 N3 N3 N 0 1 N N N 8.515 17.348 17.561 -7.928 2.252 0.316 N3 TL3 20
TL3 N4 N4 N 0 1 N N N 7.423 18.926 16.195 -8.352 0.398 1.649 N4 TL3 21
TL3 C15 C15 C 0 1 Y N N 8.565 21.033 17.735 -5.933 -0.807 0.687 C15 TL3 22
TL3 C16 C16 C 0 1 Y N N 8.890 22.064 18.670 -4.772 -1.379 0.215 C16 TL3 23
TL3 C17 C17 C 0 1 N N N 9.827 25.028 21.543 -1.359 -1.456 0.781 C17 TL3 24
TL3 O4 O4 O 0 1 N N N 11.084 24.733 22.264 0.076 -1.332 0.862 O4 TL3 25
TL3 C18 C18 C 0 1 N N R 12.134 24.327 21.278 0.561 -1.434 -0.512 C18 TL3 26
TL3 C19 C19 C 0 1 Y N N 11.441 28.696 21.813 4.494 -1.057 0.556 C19 TL3 27
TL3 C20 C20 C 0 1 Y N N 11.429 29.528 22.943 5.856 -0.872 0.462 C20 TL3 28
TL3 HN1 HN1 H 0 1 N N N 12.871 32.103 25.221 7.729 2.590 0.151 HN1 TL3 29
TL3 HN21 1HN2 H 0 0 N N N 11.341 29.834 26.949 9.648 -0.332 0.219 HN21 TL3 30
TL3 HN22 2HN2 H 0 0 N N N 12.340 28.575 26.554 8.328 -1.362 0.360 HN22 TL3 31
TL3 H3 H3 H 0 1 N N N 13.784 27.860 24.974 5.918 2.516 0.259 H3 TL3 32
TL3 H4 H4 H 0 1 N N N 13.768 26.318 22.960 3.489 2.174 0.419 H4 TL3 33
TL3 H6 H6 H 0 1 N N N 13.888 25.603 21.045 2.640 -1.209 -1.126 H6 TL3 34
TL3 H71 1H7 H 0 1 N N N 13.756 24.763 18.648 1.984 1.482 -1.237 H71 TL3 35
TL3 H72 2H7 H 0 1 N N N 12.792 26.107 18.409 1.693 0.354 -2.596 H72 TL3 36
TL3 H8 H8 H 0 1 N N N 11.609 22.580 20.087 -0.651 -1.034 -2.329 H8 TL3 37
TL3 H9 H9 H 0 1 N N N 9.311 24.301 19.537 -2.031 0.384 -0.175 H9 TL3 38
TL3 H11 H11 H 0 1 N N N 9.219 20.178 21.613 -3.748 1.088 -1.866 H11 TL3 39
TL3 H12 H12 H 0 1 N N N 8.692 18.341 19.974 -5.822 2.115 -1.038 H12 TL3 40
TL3 HN3 HN3 H 0 1 N N N 7.775 16.689 17.317 -8.747 2.655 0.644 HN3 TL3 41
TL3 HN41 1HN4 H 0 0 N N N 7.788 19.744 15.707 -8.084 -0.480 1.963 HN41 TL3 42
TL3 HN42 2HN4 H 0 0 N N N 7.232 18.180 15.527 -9.170 0.801 1.977 HN42 TL3 43
TL3 H15 H15 H 0 1 N N N 8.346 21.272 16.681 -6.545 -1.336 1.402 H15 TL3 44
TL3 H16 H16 H 0 1 N N N 9.010 23.094 18.295 -4.472 -2.356 0.563 H16 TL3 45
TL3 H171 1H17 H 0 0 N N N 8.906 25.036 22.171 -1.827 -1.044 1.675 H171 TL3 46
TL3 H172 2H17 H 0 0 N N N 9.714 26.079 21.189 -1.643 -2.500 0.650 H172 TL3 47
TL3 H18 H18 H 0 1 N N N 12.891 23.719 21.826 0.668 -2.467 -0.844 H18 TL3 48
TL3 H19 H19 H 0 1 N N N 10.805 28.938 20.945 4.089 -2.055 0.639 H19 TL3 49
TL3 H20 H20 H 0 1 N N N 10.755 30.401 22.940 6.519 -1.724 0.475 H20 TL3 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TL3 N1 C1 DOUB N N 1
TL3 N1 HN1 SING N N 2
TL3 C1 N2 SING N N 3
TL3 C1 C2 SING N N 4
TL3 N2 HN21 SING N N 5
TL3 N2 HN22 SING N N 6
TL3 C2 C3 DOUB Y N 7
TL3 C2 C20 SING Y N 8
TL3 C3 C4 SING Y N 9
TL3 C3 H3 SING N N 10
TL3 C4 C5 DOUB Y N 11
TL3 C4 H4 SING N N 12
TL3 C5 O1 SING N N 13
TL3 C5 C19 SING Y N 14
TL3 O1 C6 SING N N 15
TL3 C6 C7 SING N N 16
TL3 C6 C18 SING N N 17
TL3 C6 H6 SING N N 18
TL3 C7 O2 SING N N 19
TL3 C7 H71 SING N N 20
TL3 C7 H72 SING N N 21
TL3 O2 C8 SING N N 22
TL3 C8 C9 SING N N 23
TL3 C8 C18 SING N N 24
TL3 C8 H8 SING N N 25
TL3 C9 O3 SING N N 26
TL3 C9 C17 SING N N 27
TL3 C9 H9 SING N N 28
TL3 O3 C10 SING N N 29
TL3 C10 C11 DOUB Y N 30
TL3 C10 C16 SING Y N 31
TL3 C11 C12 SING Y N 32
TL3 C11 H11 SING N N 33
TL3 C12 C13 DOUB Y N 34
TL3 C12 H12 SING N N 35
TL3 C13 C14 SING N N 36
TL3 C13 C15 SING Y N 37
TL3 C14 N3 DOUB N N 38
TL3 C14 N4 SING N N 39
TL3 N3 HN3 SING N N 40
TL3 N4 HN41 SING N N 41
TL3 N4 HN42 SING N N 42
TL3 C15 C16 DOUB Y N 43
TL3 C15 H15 SING N N 44
TL3 C16 H16 SING N N 45
TL3 C17 O4 SING N N 46
TL3 C17 H171 SING N N 47
TL3 C17 H172 SING N N 48
TL3 O4 C18 SING N N 49
TL3 C18 H18 SING N N 50
TL3 C19 C20 DOUB Y N 51
TL3 C19 H19 SING N N 52
TL3 C20 H20 SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TL3 SMILES ACDLabs 10.04 "O(c1ccc(C(=[N@H])N)cc1)C3C4OCC(Oc2ccc(C(=[N@H])N)cc2)C4OC3"
TL3 SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(O[C@@H]2CO[C@@H]3[C@H](CO[C@H]23)Oc4ccc(cc4)C(N)=N)cc1"
TL3 SMILES CACTVS 3.341 "NC(=N)c1ccc(O[CH]2CO[CH]3[CH](CO[CH]23)Oc4ccc(cc4)C(N)=N)cc1"
TL3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)O[C@H]2CO[C@H]3[C@@H]2OC[C@H]3Oc4ccc(cc4)C(=N)N"
TL3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)OC2COC3C2OCC3Oc4ccc(cc4)C(=N)N"
TL3 InChI InChI 1.03 "InChI=1S/C20H22N4O4/c21-19(22)11-1-5-13(6-2-11)27-15-9-25-18-16(10-26-17(15)18)28-14-7-3-12(4-8-14)20(23)24/h1-8,15-18H,9-10H2,(H3,21,22)(H3,23,24)/t15-,16+,17-,18-/m1/s1"
TL3 InChIKey InChI 1.03 CDEVHSIVANGYRI-XMTFNYHQSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TL3 "SYSTEMATIC NAME" ACDLabs 10.04 "1,4:3,6-dianhydro-2,5-bis-O-(4-carbamimidoylphenyl)-D-glucitol"
TL3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[(3R,3aR,6S,6aR)-6-(4-carbamimidoylphenoxy)-2,3,3a,5,6,6a-hexahydrofuro[4,5-b]furan-3-yl]oxy]benzenecarboximidamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TL3 "Create component" 2004-12-08 RCSB
TL3 "Modify descriptor" 2011-06-04 RCSB
TL3 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TL3
_pdbx_chem_comp_synonyms.name "2,5-O,O-BIS-{4',4''-AMIDINOPHENYL}-1,4:3,6-DIANHYDRO-D-SORBITOL"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##