data_TL4
#
_chem_comp.id TL4
_chem_comp.name "2-O-{3-[AMINO(IMINO)METHYL]PHENYL}-5-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H22 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "2-O-(3'-AMIDINOPHENYL)-5-O-(4''-AMIDINOPHENYL}-1,4:3,6-DIANHYDRO-D-SORBITOL"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-12-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 382.413
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TL4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1Y5U
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TL4 C4 C4 C 0 1 Y N N 37.885 24.389 55.993 -6.309 0.218 0.405 C4 TL4 1
TL4 C5 C5 C 0 1 Y N N 39.317 24.482 56.228 -5.561 -0.668 1.183 C5 TL4 2
TL4 C6 C6 C 0 1 Y N N 40.232 25.016 55.230 -4.185 -0.595 1.177 C6 TL4 3
TL4 C7 C7 C 0 1 Y N N 39.751 25.533 53.940 -3.542 0.359 0.398 C7 TL4 4
TL4 O8 O8 O 0 1 N N N 40.855 26.015 53.051 -2.186 0.428 0.395 O8 TL4 5
TL4 C9 C9 C 0 1 N N R 42.320 26.338 53.533 -1.746 -0.153 -0.835 C9 TL4 6
TL4 C10 C10 C 0 1 N N N 42.865 27.204 52.326 -1.499 -1.667 -0.659 C10 TL4 7
TL4 O11 O11 O 0 1 N N N 43.249 26.177 51.388 -0.091 -1.780 -0.362 O11 TL4 8
TL4 C12 C12 C 0 1 N N R 43.964 25.288 52.268 0.565 -0.834 -1.232 C12 TL4 9
TL4 C13 C13 C 0 1 N N S 44.142 23.871 51.591 1.860 -0.349 -0.548 C13 TL4 10
TL4 O14 O14 O 0 1 N N N 45.231 23.040 52.245 2.972 -0.473 -1.437 O14 TL4 11
TL4 C15 C15 C 0 1 Y N N 45.166 21.666 51.804 4.072 -0.674 -0.665 C15 TL4 12
TL4 C16 C16 C 0 1 Y N N 44.735 21.259 50.456 4.314 -1.926 -0.115 C16 TL4 13
TL4 C17 C17 C 0 1 Y N N 44.700 19.840 50.116 5.431 -2.135 0.672 C17 TL4 14
TL4 C18 C18 C 0 1 Y N N 45.059 18.843 51.094 6.313 -1.102 0.915 C18 TL4 15
TL4 C19 C19 C 0 1 Y N N 45.467 19.220 52.447 6.078 0.159 0.366 C19 TL4 16
TL4 C20 C20 C 0 1 N N N 45.841 18.189 53.490 7.022 1.270 0.626 C20 TL4 17
TL4 N21 N21 N 0 1 N N N 46.695 18.521 54.433 6.800 2.446 0.113 N21 TL4 18
TL4 N22 N22 N 0 1 N N N 45.279 16.940 53.437 8.134 1.060 1.411 N22 TL4 19
TL4 C23 C23 C 0 1 Y N N 45.526 20.648 52.802 4.954 0.368 -0.431 C23 TL4 20
TL4 C24 C24 C 0 1 N N N 42.628 23.476 51.767 1.585 1.137 -0.226 C24 TL4 21
TL4 O25 O25 O 0 1 N N N 42.378 23.806 53.154 0.148 1.237 -0.147 O25 TL4 22
TL4 C26 C26 C 0 1 N N R 43.072 25.002 53.474 -0.368 0.414 -1.238 C26 TL4 23
TL4 C27 C27 C 0 1 Y N N 38.253 25.469 53.804 -4.283 1.241 -0.378 C27 TL4 24
TL4 C28 C28 C 0 1 Y N N 37.346 24.894 54.742 -5.659 1.170 -0.381 C28 TL4 25
TL4 N1 N1 N 0 1 N N N 35.772 23.283 56.657 -8.391 -0.751 1.140 N1 TL4 26
TL4 C2 C2 C 0 1 N N N 36.855 23.902 57.053 -7.786 0.142 0.409 C2 TL4 27
TL4 N3 N3 N 0 1 N N N 37.015 24.100 58.411 -8.523 1.017 -0.360 N3 TL4 28
TL4 H5 H5 H 0 1 N N N 39.722 24.137 57.194 -6.061 -1.409 1.789 H5 TL4 29
TL4 H6 H6 H 0 1 N N N 41.312 25.029 55.456 -3.606 -1.279 1.779 H6 TL4 30
TL4 H9 H9 H 0 1 N N N 42.406 26.817 54.536 -2.477 0.025 -1.623 H9 TL4 31
TL4 H101 1H10 H 0 0 N N N 43.666 27.934 52.587 -2.094 -2.055 0.168 H101 TL4 32
TL4 H102 2H10 H 0 0 N N N 42.157 27.969 51.931 -1.737 -2.200 -1.580 H102 TL4 33
TL4 H12 H12 H 0 1 N N N 44.942 25.760 52.520 0.741 -1.234 -2.231 H12 TL4 34
TL4 H13 H13 H 0 1 N N N 44.525 23.766 50.549 2.041 -0.910 0.368 H13 TL4 35
TL4 H16 H16 H 0 1 N N N 44.440 22.012 49.706 3.628 -2.738 -0.302 H16 TL4 36
TL4 H17 H17 H 0 1 N N N 44.398 19.517 49.106 5.615 -3.111 1.097 H17 TL4 37
TL4 H18 H18 H 0 1 N N N 45.021 17.780 50.804 7.185 -1.269 1.531 H18 TL4 38
TL4 H21 H21 H 0 1 N N N 47.249 18.076 53.702 7.418 3.174 0.283 H21 TL4 39
TL4 H221 1H22 H 0 0 N N N 45.451 16.545 52.513 8.300 0.184 1.793 H221 TL4 40
TL4 H222 2H22 H 0 0 N N N 45.531 16.245 54.140 8.752 1.787 1.581 H222 TL4 41
TL4 H23 H23 H 0 1 N N N 45.839 20.955 53.814 4.767 1.342 -0.859 H23 TL4 42
TL4 H241 1H24 H 0 0 N N N 42.381 22.427 51.483 2.038 1.408 0.728 H241 TL4 43
TL4 H242 2H24 H 0 0 N N N 41.931 23.953 51.039 1.967 1.774 -1.023 H242 TL4 44
TL4 H26 H26 H 0 1 N N N 43.482 24.779 54.487 -0.383 0.942 -2.191 H26 TL4 45
TL4 H27 H27 H 0 1 N N N 37.762 25.893 52.912 -3.779 1.981 -0.983 H27 TL4 46
TL4 H28 H28 H 0 1 N N N 36.269 24.842 54.509 -6.234 1.857 -0.984 H28 TL4 47
TL4 HN1 HN1 H 0 1 N N N 34.932 23.773 56.966 -9.360 -0.801 1.142 HN1 TL4 48
TL4 HN31 1HN3 H 0 0 N N N 37.153 25.100 58.558 -8.072 1.683 -0.903 HN31 TL4 49
TL4 HN32 2HN3 H 0 0 N N N 36.340 23.781 59.106 -9.491 0.965 -0.360 HN32 TL4 50
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TL4 C4 C5 DOUB Y N 1
TL4 C4 C28 SING Y N 2
TL4 C4 C2 SING N N 3
TL4 C5 C6 SING Y N 4
TL4 C5 H5 SING N N 5
TL4 C6 C7 DOUB Y N 6
TL4 C6 H6 SING N N 7
TL4 C7 O8 SING N N 8
TL4 C7 C27 SING Y N 9
TL4 O8 C9 SING N N 10
TL4 C9 C10 SING N N 11
TL4 C9 C26 SING N N 12
TL4 C9 H9 SING N N 13
TL4 C10 O11 SING N N 14
TL4 C10 H101 SING N N 15
TL4 C10 H102 SING N N 16
TL4 O11 C12 SING N N 17
TL4 C12 C13 SING N N 18
TL4 C12 C26 SING N N 19
TL4 C12 H12 SING N N 20
TL4 C13 O14 SING N N 21
TL4 C13 C24 SING N N 22
TL4 C13 H13 SING N N 23
TL4 O14 C15 SING N N 24
TL4 C15 C16 DOUB Y N 25
TL4 C15 C23 SING Y N 26
TL4 C16 C17 SING Y N 27
TL4 C16 H16 SING N N 28
TL4 C17 C18 DOUB Y N 29
TL4 C17 H17 SING N N 30
TL4 C18 C19 SING Y N 31
TL4 C18 H18 SING N N 32
TL4 C19 C20 SING N N 33
TL4 C19 C23 DOUB Y N 34
TL4 C20 N21 DOUB N N 35
TL4 C20 N22 SING N N 36
TL4 N21 H21 SING N N 37
TL4 N22 H221 SING N N 38
TL4 N22 H222 SING N N 39
TL4 C23 H23 SING N N 40
TL4 C24 O25 SING N N 41
TL4 C24 H241 SING N N 42
TL4 C24 H242 SING N N 43
TL4 O25 C26 SING N N 44
TL4 C26 H26 SING N N 45
TL4 C27 C28 DOUB Y N 46
TL4 C27 H27 SING N N 47
TL4 C28 H28 SING N N 48
TL4 N1 C2 DOUB N N 49
TL4 N1 HN1 SING N N 50
TL4 C2 N3 SING N N 51
TL4 N3 HN31 SING N N 52
TL4 N3 HN32 SING N N 53
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TL4 SMILES ACDLabs 10.04 "O(c1ccc(C(=[N@H])N)cc1)C3C4OCC(Oc2cc(C(=[N@H])N)ccc2)C4OC3"
TL4 SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(O[C@@H]2CO[C@@H]3[C@H](CO[C@H]23)Oc4cccc(c4)C(N)=N)cc1"
TL4 SMILES CACTVS 3.341 "NC(=N)c1ccc(O[CH]2CO[CH]3[CH](CO[CH]23)Oc4cccc(c4)C(N)=N)cc1"
TL4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)O[C@H]2CO[C@H]3[C@@H]2OC[C@H]3Oc4ccc(cc4)C(=N)N)C(=N)N"
TL4 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)OC2COC3C2OCC3Oc4ccc(cc4)C(=N)N)C(=N)N"
TL4 InChI InChI 1.03 "InChI=1S/C20H22N4O4/c21-19(22)11-4-6-13(7-5-11)27-15-9-25-18-16(10-26-17(15)18)28-14-3-1-2-12(8-14)20(23)24/h1-8,15-18H,9-10H2,(H3,21,22)(H3,23,24)/t15-,16+,17-,18-/m1/s1"
TL4 InChIKey InChI 1.03 DKBAWRNTUZFJKV-XMTFNYHQSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TL4 "SYSTEMATIC NAME" ACDLabs 10.04 "1,4:3,6-dianhydro-2-O-(3-carbamimidoylphenyl)-5-O-(4-carbamimidoylphenyl)-D-glucitol"
TL4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[[(3R,3aR,6S,6aR)-6-(3-carbamimidoylphenoxy)-2,3,3a,5,6,6a-hexahydrofuro[4,5-b]furan-3-yl]oxy]benzenecarboximidamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TL4 "Create component" 2004-12-08 RCSB
TL4 "Modify descriptor" 2011-06-04 RCSB
TL4 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TL4
_pdbx_chem_comp_synonyms.name "2-O-(3'-AMIDINOPHENYL)-5-O-(4''-AMIDINOPHENYL}-1,4:3,6-DIANHYDRO-D-SORBITOL"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##