data_TLC # _chem_comp.id TLC _chem_comp.name "2-O,3-ETHDIYL-ARABINOFURANOSYL-THYMINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H17 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms "[3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-02-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.245 _chem_comp.one_letter_code T _chem_comp.three_letter_code TLC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EI4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TLC P P P 0 1 N N N 20.230 -0.828 24.389 1.173 -0.144 -4.250 P TLC 1 TLC OP1 O1P O 0 1 N N N 21.056 0.212 23.751 1.758 1.149 -3.833 OP1 TLC 2 TLC OP2 O2P O 0 1 N N N 20.847 -2.087 24.828 2.315 -1.056 -4.926 OP2 TLC 3 TLC OP3 O3P O 0 1 N Y N 19.088 -0.980 23.270 -0.004 0.117 -5.316 OP3 TLC 4 TLC "O5'" O5* O 0 1 N N N 19.490 -0.218 25.658 0.573 -0.902 -2.963 "O5'" TLC 5 TLC "C5'" C5* C 0 1 N N N 19.144 1.167 25.706 -0.429 -0.047 -2.410 "C5'" TLC 6 TLC "C4'" C4* C 0 1 N N R 18.267 1.446 26.898 -1.043 -0.711 -1.177 "C4'" TLC 7 TLC "O4'" O4* O 0 1 N N N 17.036 0.694 26.832 -0.065 -0.805 -0.119 "O4'" TLC 8 TLC "C1'" C1* C 0 1 N N R 16.436 0.843 28.084 -0.832 -0.957 1.094 "C1'" TLC 9 TLC N1 N1 N 0 1 N N N 15.338 -0.126 28.188 -0.021 -0.596 2.260 N1 TLC 10 TLC C6 C6 C 0 1 N N N 15.518 -1.462 27.870 1.036 0.259 2.110 C6 TLC 11 TLC C2 C2 C 0 1 N N N 14.107 0.365 28.581 -0.322 -1.109 3.466 C2 TLC 12 TLC O2 O2 O 0 1 N N N 13.941 1.527 28.882 -1.266 -1.868 3.576 O2 TLC 13 TLC N3 N3 N 0 1 N N N 13.086 -0.561 28.597 0.406 -0.795 4.553 N3 TLC 14 TLC C4 C4 C 0 1 N N N 13.190 -1.906 28.260 1.458 0.040 4.447 C4 TLC 15 TLC O4 O4 O 0 1 N N N 12.194 -2.620 28.281 2.118 0.325 5.430 O4 TLC 16 TLC C5 C5 C 0 1 N N N 14.525 -2.357 27.881 1.783 0.591 3.184 C5 TLC 17 TLC C5M C5M C 0 1 N N N 14.730 -3.800 27.523 2.952 1.532 3.039 C5M TLC 18 TLC "C2'" C2* C 0 1 N N S 17.569 0.721 29.110 -2.017 0.022 0.939 "C2'" TLC 19 TLC O2L O2L O 0 1 N N N 17.885 -0.670 29.403 -1.601 1.331 1.420 O2L TLC 20 TLC C3L C3L C 0 1 N N N 19.903 0.145 28.507 -1.859 1.649 -0.893 C3L TLC 21 TLC C2L C2L C 0 1 N N N 18.997 -1.020 28.530 -2.098 2.311 0.486 C2L TLC 22 TLC "C3'" C3* C 0 1 N N R 18.791 1.255 28.325 -2.175 0.164 -0.601 "C3'" TLC 23 TLC "O3'" O3* O 0 1 N N N 19.312 2.548 28.714 -3.468 -0.227 -1.065 "O3'" TLC 24 TLC HOP2 2HOP H 0 0 N N N 20.314 -2.757 25.239 2.647 -0.567 -5.691 HOP2 TLC 25 TLC HOP3 3HOP H 0 0 N N N 18.555 -1.650 23.681 -0.357 -0.748 -5.561 HOP3 TLC 26 TLC "H5'" 1H5* H 0 1 N N N 20.046 1.821 25.691 -1.207 0.128 -3.154 "H5'" TLC 27 TLC "H5''" 2H5* H 0 0 N N N 18.674 1.511 24.755 0.020 0.903 -2.125 "H5''" TLC 28 TLC "H4'" H4* H 0 1 N N N 18.171 2.549 26.772 -1.423 -1.701 -1.430 "H4'" TLC 29 TLC "H1'" H1* H 0 1 N N N 15.946 1.828 28.266 -1.196 -1.981 1.188 "H1'" TLC 30 TLC H6 H6 H 0 1 N N N 16.516 -1.837 27.589 1.271 0.666 1.138 H6 TLC 31 TLC HN3 HN3 H 0 1 N N N 12.169 -0.219 28.884 0.175 -1.174 5.416 HN3 TLC 32 TLC H71 1H5M H 0 1 N N N 13.901 -4.546 27.532 3.425 1.675 4.010 H71 TLC 33 TLC H72 2H5M H 0 1 N N N 15.198 -3.831 26.511 3.675 1.108 2.342 H72 TLC 34 TLC H73 3H5M H 0 1 N N N 15.544 -4.194 28.174 2.601 2.492 2.661 H73 TLC 35 TLC "H2'" H2* H 0 1 N N N 17.307 1.239 30.062 -2.925 -0.325 1.432 "H2'" TLC 36 TLC H3L1 1H3L H 0 0 N N N 20.598 0.262 29.370 -0.823 1.771 -1.208 H3L1 TLC 37 TLC H3L2 2H3L H 0 0 N N N 20.729 0.128 27.758 -2.544 2.051 -1.641 H3L2 TLC 38 TLC H2L1 1H2L H 0 0 N N N 19.506 -1.967 28.824 -1.534 3.241 0.568 H2L1 TLC 39 TLC H2L2 2H2L H 0 0 N N N 18.672 -1.345 27.513 -3.161 2.491 0.647 H2L2 TLC 40 TLC "HO3'" H3T H 0 0 N Y N 19.636 2.429 29.598 -3.462 -0.126 -2.027 "HO3'" TLC 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TLC P OP1 DOUB N N 1 TLC P OP2 SING N N 2 TLC P OP3 SING N N 3 TLC P "O5'" SING N N 4 TLC OP2 HOP2 SING N N 5 TLC OP3 HOP3 SING N N 6 TLC "O5'" "C5'" SING N N 7 TLC "C5'" "C4'" SING N N 8 TLC "C5'" "H5'" SING N N 9 TLC "C5'" "H5''" SING N N 10 TLC "C4'" "O4'" SING N N 11 TLC "C4'" "C3'" SING N N 12 TLC "C4'" "H4'" SING N N 13 TLC "O4'" "C1'" SING N N 14 TLC "C1'" N1 SING N N 15 TLC "C1'" "C2'" SING N N 16 TLC "C1'" "H1'" SING N N 17 TLC N1 C6 SING N N 18 TLC N1 C2 SING N N 19 TLC C6 C5 DOUB N N 20 TLC C6 H6 SING N N 21 TLC C2 O2 DOUB N N 22 TLC C2 N3 SING N N 23 TLC N3 C4 SING N N 24 TLC N3 HN3 SING N N 25 TLC C4 O4 DOUB N N 26 TLC C4 C5 SING N N 27 TLC C5 C5M SING N N 28 TLC C5M H71 SING N N 29 TLC C5M H72 SING N N 30 TLC C5M H73 SING N N 31 TLC "C2'" O2L SING N N 32 TLC "C2'" "C3'" SING N N 33 TLC "C2'" "H2'" SING N N 34 TLC O2L C2L SING N N 35 TLC C3L C2L SING N N 36 TLC C3L "C3'" SING N N 37 TLC C3L H3L1 SING N N 38 TLC C3L H3L2 SING N N 39 TLC C2L H2L1 SING N N 40 TLC C2L H2L2 SING N N 41 TLC "C3'" "O3'" SING N N 42 TLC "O3'" "HO3'" SING N N 43 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TLC SMILES ACDLabs 10.04 "O=C1C(=CN(C(=O)N1)C3OC(C2(O)CCOC23)COP(=O)(O)O)C" TLC SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@]3(O)CCO[C@H]23)C(=O)NC1=O" TLC SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[C]3(O)CCO[CH]23)C(=O)NC1=O" TLC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]3[C@@](CCO3)([C@H](O2)COP(=O)(O)O)O" TLC SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C3C(CCO3)(C(O2)COP(=O)(O)O)O" TLC InChI InChI 1.03 "InChI=1S/C12H17N2O9P/c1-6-4-14(11(16)13-9(6)15)10-8-12(17,2-3-21-8)7(23-10)5-22-24(18,19)20/h4,7-8,10,17H,2-3,5H2,1H3,(H,13,15,16)(H2,18,19,20)/t7-,8-,10-,12-/m1/s1" TLC InChIKey InChI 1.03 GYCSZLSGLYHOGR-FWSPBBIJSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TLC "SYSTEMATIC NAME" ACDLabs 10.04 "[(3aR,4R,6R,6aS)-3a-hydroxy-6-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)hexahydrofuro[3,4-b]furan-4-yl]methyl dihydrogen phosphate" TLC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3aR,4R,6R,6aS)-3a-hydroxy-6-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-3,4,6,6a-tetrahydro-2H-furo[4,3-b]furan-4-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TLC "Create component" 2000-02-25 RCSB TLC "Modify descriptor" 2011-06-04 RCSB TLC "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TLC _pdbx_chem_comp_synonyms.name "[3.3.0]BICYCLO-ARABINO-THYMINE-5'-PHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##