data_TM2 # _chem_comp.id TM2 _chem_comp.name ;5-{[(2-sulfoethyl)amino]methyl}uridine 5'-(dihydrogen phosphate) ; _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C12 H20 N3 O12 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.339 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2VQF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TM2 P P P 0 1 N N N 203.045 105.634 6.600 -5.870 2.431 0.129 P TM2 1 TM2 O1P O1P O 0 1 N N N 204.105 105.846 7.611 -7.229 2.059 -0.324 O1P TM2 2 TM2 O2P O2P O 0 1 N N N 202.449 106.791 5.897 -5.567 3.958 -0.282 O2P TM2 3 TM2 O3P O3P O 0 1 N Y N 203.562 104.603 5.692 -5.776 2.277 1.729 O3P TM2 4 TM2 "O5'" "O5'" O 0 1 N N N 201.856 104.792 7.261 -4.788 1.464 -0.568 "O5'" TM2 5 TM2 "C5'" "C5'" C 0 1 N N N 201.253 105.239 8.471 -4.849 0.038 -0.482 "C5'" TM2 6 TM2 "C4'" "C4'" C 0 1 N N R 200.191 104.261 8.940 -3.676 -0.570 -1.252 "C4'" TM2 7 TM2 "O4'" "O4'" O 0 1 N N N 198.904 104.653 8.398 -2.438 -0.236 -0.601 "O4'" TM2 8 TM2 "C1'" "C1'" C 0 1 N N R 198.222 103.516 7.902 -1.551 -1.361 -0.782 "C1'" TM2 9 TM2 N1 N1 N 0 1 N N N 198.181 103.604 6.415 -0.494 -1.352 0.233 N1 TM2 10 TM2 C6 C6 C 0 1 N N N 199.189 104.270 5.748 0.817 -1.410 -0.153 C6 TM2 11 TM2 C2 C2 C 0 1 N N N 197.136 103.017 5.733 -0.822 -1.282 1.536 C2 TM2 12 TM2 O2 O2 O 0 1 N N N 196.229 102.421 6.286 -1.993 -1.227 1.857 O2 TM2 13 TM2 N3 N3 N 0 1 N N N 197.190 103.152 4.368 0.128 -1.273 2.489 N3 TM2 14 TM2 C4 C4 C 0 1 N N N 198.164 103.804 3.633 1.432 -1.333 2.150 C4 TM2 15 TM2 O4 O4 O 0 1 N N N 198.081 103.844 2.410 2.293 -1.325 3.011 O4 TM2 16 TM2 C5 C5 C 0 1 N N N 199.221 104.390 4.416 1.791 -1.402 0.782 C5 TM2 17 TM2 "C2'" "C2'" C 0 1 N N R 198.973 102.294 8.419 -2.478 -2.588 -0.593 "C2'" TM2 18 TM2 "O2'" "O2'" O 0 1 N N N 198.476 101.917 9.688 -1.954 -3.732 -1.271 "O2'" TM2 19 TM2 "C3'" "C3'" C 0 1 N N S 200.402 102.822 8.489 -3.792 -2.106 -1.256 "C3'" TM2 20 TM2 C7 C7 C 0 1 N N N 200.276 105.087 3.516 3.241 -1.465 0.375 C7 TM2 21 TM2 N8 N8 N 0 1 N N N 201.033 104.678 2.181 3.789 -0.104 0.302 N8 TM2 22 TM2 C9 C9 C 0 1 N N N 202.459 104.329 2.594 5.204 -0.127 -0.093 C9 TM2 23 TM2 C11 C11 C 0 1 N N N 202.747 103.365 1.444 5.738 1.305 -0.159 C11 TM2 24 TM2 S12 S12 S 0 1 N N N 202.239 101.612 1.721 7.485 1.277 -0.646 S12 TM2 25 TM2 O1S O1S O 0 1 N N N 203.327 100.837 2.345 8.282 0.711 0.386 O1S TM2 26 TM2 O2S O2S O 0 1 N N N 201.088 101.507 2.638 7.620 0.848 -1.994 O2S TM2 27 TM2 "O3'" "O3'" O 0 1 N N N 201.172 102.118 9.455 -3.885 -2.597 -2.595 "O3'" TM2 28 TM2 O3S O3S O 0 1 N N N 201.877 101.003 0.434 7.895 2.742 -0.675 O3S TM2 29 TM2 H2P H2P H 0 1 N N N 202.321 107.504 6.512 -6.181 4.598 0.102 H2P TM2 30 TM2 H3P H3P H 0 1 N N N 203.674 104.972 4.824 -4.911 2.506 2.095 H3P TM2 31 TM2 H3S H3S H 0 1 N N N 201.799 101.681 -0.227 8.818 2.888 -0.923 H3S TM2 32 TM2 "H5'1" "1H5'" H 0 0 N N N 202.028 105.325 9.247 -4.794 -0.265 0.563 "H5'1" TM2 33 TM2 "H5'2" "2H5'" H 0 0 N N N 200.778 106.214 8.289 -5.787 -0.312 -0.913 "H5'2" TM2 34 TM2 "H4'" "H4'" H 0 1 N N N 200.246 104.295 10.038 -3.669 -0.194 -2.275 "H4'" TM2 35 TM2 "H3'" "H3'" H 0 1 N N N 200.947 102.716 7.540 -4.654 -2.426 -0.670 "H3'" TM2 36 TM2 "H1'" "H1'" H 0 1 N N N 197.178 103.449 8.242 -1.120 -1.352 -1.783 "H1'" TM2 37 TM2 "H2'" "H2'" H 0 1 N N N 198.878 101.390 7.799 -2.631 -2.801 0.465 "H2'" TM2 38 TM2 H6 H6 H 0 1 N N N 199.986 104.713 6.326 1.072 -1.462 -1.202 H6 TM2 39 TM2 H3 H3 H 0 1 N N N 196.445 102.734 3.849 -0.125 -1.222 3.424 H3 TM2 40 TM2 H7C1 1H7C H 0 0 N N N 199.745 105.999 3.206 3.800 -2.043 1.112 H7C1 TM2 41 TM2 H7C2 2H7C H 0 0 N N N 201.131 104.934 4.191 3.324 -1.944 -0.600 H7C2 TM2 42 TM2 HA HA H 0 1 N N N 199.198 101.832 10.299 -2.500 -4.525 -1.183 HA TM2 43 TM2 HB HB H 0 1 N N N 202.044 101.961 9.112 -3.961 -3.559 -2.657 HB TM2 44 TM2 H8 H8 H 0 1 N N N 200.589 103.892 1.751 3.248 0.470 -0.327 H8 TM2 45 TM2 H9C1 1H9C H 0 0 N N N 203.137 105.194 2.633 5.776 -0.695 0.641 H9C1 TM2 46 TM2 H9C2 2H9C H 0 0 N N N 202.593 103.933 3.612 5.300 -0.596 -1.072 H9C2 TM2 47 TM2 H111 1H11 H 0 0 N N N 202.200 103.731 0.562 5.166 1.873 -0.892 H111 TM2 48 TM2 H112 2H11 H 0 0 N N N 203.841 103.349 1.329 5.641 1.774 0.821 H112 TM2 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TM2 P O1P DOUB N N 1 TM2 P O2P SING N N 2 TM2 P O3P SING N N 3 TM2 P "O5'" SING N N 4 TM2 "O5'" "C5'" SING N N 5 TM2 "C5'" "C4'" SING N N 6 TM2 "C4'" "O4'" SING N N 7 TM2 "C4'" "C3'" SING N N 8 TM2 "O4'" "C1'" SING N N 9 TM2 "C1'" N1 SING N N 10 TM2 "C1'" "C2'" SING N N 11 TM2 N1 C6 SING N N 12 TM2 N1 C2 SING N N 13 TM2 C6 C5 DOUB N N 14 TM2 C2 O2 DOUB N N 15 TM2 C2 N3 SING N N 16 TM2 N3 C4 SING N N 17 TM2 C4 O4 DOUB N N 18 TM2 C4 C5 SING N N 19 TM2 C5 C7 SING N N 20 TM2 "C2'" "O2'" SING N N 21 TM2 "C2'" "C3'" SING N N 22 TM2 "C3'" "O3'" SING N N 23 TM2 C7 N8 SING N N 24 TM2 N8 C9 SING N N 25 TM2 C9 C11 SING N N 26 TM2 C11 S12 SING N N 27 TM2 S12 O1S DOUB N N 28 TM2 S12 O2S DOUB N N 29 TM2 S12 O3S SING N N 30 TM2 O3S H3S SING N N 31 TM2 O2P H2P SING N N 32 TM2 O3P H3P SING N N 33 TM2 "C5'" "H5'1" SING N N 34 TM2 "C5'" "H5'2" SING N N 35 TM2 "C4'" "H4'" SING N N 36 TM2 "C3'" "H3'" SING N N 37 TM2 "C1'" "H1'" SING N N 38 TM2 "C2'" "H2'" SING N N 39 TM2 C6 H6 SING N N 40 TM2 N3 H3 SING N N 41 TM2 C7 H7C1 SING N N 42 TM2 C7 H7C2 SING N N 43 TM2 "O2'" HA SING N N 44 TM2 "O3'" HB SING N N 45 TM2 N8 H8 SING N N 46 TM2 C9 H9C1 SING N N 47 TM2 C9 H9C2 SING N N 48 TM2 C11 H111 SING N N 49 TM2 C11 H112 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TM2 SMILES ACDLabs 10.04 "O=S(=O)(O)CCNCC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O" TM2 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(CNCC[S](O)(=O)=O)C(=O)NC2=O" TM2 SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=C(CNCC[S](O)(=O)=O)C(=O)NC2=O" TM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)CNCCS(=O)(=O)O" TM2 SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)CNCCS(=O)(=O)O" TM2 InChI InChI 1.03 "InChI=1S/C12H20N3O12PS/c16-8-7(5-26-28(20,21)22)27-11(9(8)17)15-4-6(10(18)14-12(15)19)3-13-1-2-29(23,24)25/h4,7-9,11,13,16-17H,1-3,5H2,(H,14,18,19)(H2,20,21,22)(H,23,24,25)/t7-,8-,9-,11-/m1/s1" TM2 InChIKey InChI 1.03 PZGIUONZFMAONE-TURQNECASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TM2 "SYSTEMATIC NAME" ACDLabs 10.04 ;5-{[(2-sulfoethyl)amino]methyl}uridine 5'-(dihydrogen phosphate) ; TM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2,4-dioxo-pyrimidin-5-yl]methylamino]ethanesulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TM2 "Create component" 2008-03-14 EBI TM2 "Modify descriptor" 2011-06-04 RCSB #