data_TM9 # _chem_comp.id TM9 _chem_comp.name "(2R,3R,4S,5R,6R)-3-azanyl-6-[bis(oxidanyl)methyl]oxane-2,4,5-triol" _chem_comp.type SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-04-25 _chem_comp.pdbx_modified_date 2013-05-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 195.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TM9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4K3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TM9 C2 C2 C 0 1 N N R 2.991 -12.245 505.294 1.859 -0.669 0.361 C2 TMP 1 TM9 C4 C4 C 0 1 N N R 1.496 -10.522 504.131 0.154 1.076 -0.162 C4 TMP 2 TM9 O4 O4 O 0 1 N N N 1.631 -9.232 503.442 -0.153 2.200 -0.989 O4 TMP 3 TM9 C5 C5 C 0 1 N N R 1.268 -11.632 503.114 -0.845 -0.051 -0.437 C5 TMP 4 TM9 C6 C6 C 0 1 N N N 0.132 -11.223 502.160 -2.255 0.415 -0.070 C6 TMP 5 TM9 N2 N2 N 0 1 N N N 3.246 -12.372 506.745 1.824 -0.323 1.788 N2 TMP 6 TM9 C3 C3 C 0 1 N N S 2.778 -10.725 504.853 1.569 0.581 -0.476 C3 TMP 7 TM9 O3 O3 O 0 1 N N N 2.870 -9.711 505.913 2.516 1.602 -0.152 O3 TMP 8 TM9 OAU OAU O 0 1 N N N -0.546 -10.160 502.819 -3.186 -0.638 -0.327 OAU TMP 9 TM9 O6 O6 O 0 1 N N N 0.487 -10.748 500.846 -2.297 0.760 1.316 O6 TMP 10 TM9 O5 O5 O 0 1 N N N 0.895 -12.801 503.887 -0.500 -1.196 0.350 O5 TMP 11 TM9 C1 C1 C 0 1 N N R 1.940 -13.308 504.760 0.795 -1.730 0.066 C1 TMP 12 TM9 O1 O1 O 0 1 N Y N 2.724 -14.281 503.985 0.865 -2.104 -1.312 O1 TMP 13 TM9 H1 H1 H 0 1 N N N 3.935 -12.534 504.809 2.844 -1.059 0.104 H1 TMP 14 TM9 H2 H2 H 0 1 N N N 0.658 -10.493 504.843 0.094 1.368 0.886 H2 TMP 15 TM9 H3 H3 H 0 1 N Y N 1.773 -8.544 504.082 -1.036 2.566 -0.843 H3 TMP 16 TM9 H4 H4 H 0 1 N N N 2.189 -11.814 502.541 -0.812 -0.314 -1.495 H4 TMP 17 TM9 H5 H5 H 0 1 N N N 3.912 -11.682 507.028 2.011 -1.133 2.361 H5 TMP 18 TM9 H6 H6 H 0 1 N N N 2.392 -12.236 507.247 2.472 0.423 1.995 H6 TMP 19 TM9 H8 H8 H 0 1 N N N 3.583 -10.511 504.135 1.644 0.336 -1.535 H8 TMP 20 TM9 H9 H9 H 0 1 N N N 3.685 -9.823 506.389 3.434 1.357 -0.326 H9 TMP 21 TM9 H10 H10 H 0 1 N N N -0.797 -10.437 503.692 -3.013 -1.447 0.174 H10 TMP 22 TM9 H11 H11 H 0 1 N N N 0.944 -11.434 500.374 -3.163 1.064 1.620 H11 TMP 23 TM9 H12 H12 H 0 1 N N N 1.489 -13.808 505.630 0.972 -2.605 0.690 H12 TMP 24 TM9 H13 H13 H 0 1 N Y N 3.419 -14.633 504.529 0.217 -2.774 -1.570 H13 TMP 25 TM9 H14 H14 H 0 1 N N N -0.548 -12.082 502.060 -2.517 1.286 -0.669 H14 TMP 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TM9 O6 C6 SING N N 1 TM9 C6 OAU SING N N 2 TM9 C6 C5 SING N N 3 TM9 C5 O5 SING N N 4 TM9 C5 C4 SING N N 5 TM9 O4 C4 SING N N 6 TM9 O5 C1 SING N N 7 TM9 O1 C1 SING N N 8 TM9 C4 C3 SING N N 9 TM9 C1 C2 SING N N 10 TM9 C3 C2 SING N N 11 TM9 C3 O3 SING N N 12 TM9 C2 N2 SING N N 13 TM9 C2 H1 SING N N 14 TM9 C4 H2 SING N N 15 TM9 O4 H3 SING N N 16 TM9 C5 H4 SING N N 17 TM9 N2 H5 SING N N 18 TM9 N2 H6 SING N N 19 TM9 C3 H8 SING N N 20 TM9 O3 H9 SING N N 21 TM9 OAU H10 SING N N 22 TM9 O6 H11 SING N N 23 TM9 C1 H12 SING N N 24 TM9 O1 H13 SING N N 25 TM9 C6 H14 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TM9 SMILES ACDLabs 12.01 "OC1C(O)C(OC(O)C1N)C(O)O" TM9 InChI InChI 1.03 "InChI=1S/C6H13NO6/c7-1-2(8)3(9)4(5(10)11)13-6(1)12/h1-6,8-12H,7H2/t1-,2+,3-,4-,6-/m1/s1" TM9 InChIKey InChI 1.03 ZMSOBRHWUAXIKZ-PTPXTALPSA-N TM9 SMILES_CANONICAL CACTVS 3.370 "N[C@H]1[C@H](O)O[C@@H](C(O)O)[C@H](O)[C@H]1O" TM9 SMILES CACTVS 3.370 "N[CH]1[CH](O)O[CH](C(O)O)[CH](O)[CH]1O" TM9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[C@H]1([C@@H]([C@H]([C@@H](O[C@H]1O)C(O)O)O)O)N" TM9 SMILES "OpenEye OEToolkits" 1.7.6 "C1(C(C(C(OC1O)C(O)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TM9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5R,6R)-3-amino-6-(dihydroxymethyl)tetrahydro-2H-pyran-2,4,5-triol (non-preferred name)" TM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S,5R,6R)-3-azanyl-6-[bis(oxidanyl)methyl]oxane-2,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TM9 "Create component" 2013-04-25 PDBJ TM9 "Initial release" 2013-05-29 RCSB #