data_TMF
#
_chem_comp.id TMF
_chem_comp.name "5,10-METHYLENE-6-HYDROFOLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H21 N7 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.424
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TMF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BJG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TMF N1 N1 N 0 1 Y N N 46.492 71.936 51.464 -0.201 -0.348 7.388 N1 TMF 1
TMF C2 C2 C 0 1 Y N N 47.587 71.596 50.788 -1.491 0.061 7.521 C2 TMF 2
TMF NA2 NA2 N 0 1 N N N 48.774 71.596 51.401 -2.037 0.135 8.776 NA2 TMF 3
TMF N3 N3 N 0 1 Y N N 47.498 71.229 49.506 -2.230 0.394 6.484 N3 TMF 4
TMF C4 C4 C 0 1 Y N N 46.353 71.170 48.806 -1.740 0.334 5.234 C4 TMF 5
TMF O4 O4 O 0 1 N N N 46.329 70.783 47.488 -2.434 0.652 4.280 O4 TMF 6
TMF C4A C4A C 0 1 Y N N 45.177 71.532 49.508 -0.416 -0.099 5.040 C4A TMF 7
TMF N5 N5 N 0 1 N N N 43.963 71.685 48.895 0.195 -0.255 3.802 N5 TMF 8
TMF C6 C6 C 0 1 N N S 42.815 72.223 49.680 1.254 -1.280 3.609 C6 TMF 9
TMF C7 C7 C 0 1 N N N 42.967 72.078 51.127 2.143 -1.197 4.822 C7 TMF 10
TMF N8 N8 N 0 1 N N N 44.358 72.245 51.541 1.661 -0.796 5.957 N8 TMF 11
TMF C8A C8A C 0 1 Y N N 45.322 71.909 50.853 0.366 -0.432 6.139 C8A TMF 12
TMF C9 C9 C 0 1 N N N 41.599 71.512 49.264 1.992 -0.878 2.324 C9 TMF 13
TMF N10 N10 N 0 1 N N N 41.893 70.925 47.949 1.510 0.498 2.026 N10 TMF 14
TMF C11 C11 C 0 1 Y N N 40.491 72.567 44.369 1.266 0.810 -2.116 C11 TMF 15
TMF C12 C12 C 0 1 Y N N 41.743 71.926 44.392 2.001 1.747 -1.385 C12 TMF 16
TMF C13 C13 C 0 1 Y N N 42.239 71.421 45.606 2.080 1.642 -0.015 C13 TMF 17
TMF C14 C14 C 0 1 Y N N 41.500 71.547 46.809 1.428 0.602 0.642 C14 TMF 18
TMF C15 C15 C 0 1 Y N N 40.284 72.262 46.786 0.700 -0.336 -0.083 C15 TMF 19
TMF C16 C16 C 0 1 Y N N 39.791 72.765 45.577 0.613 -0.232 -1.452 C16 TMF 20
TMF C C C 0 1 N N N 39.809 72.874 43.124 1.179 0.920 -3.584 C TMF 21
TMF O O O 0 1 N N N 38.579 72.951 43.103 1.747 1.828 -4.160 O TMF 22
TMF N N N 0 1 N N N 40.503 73.065 41.988 0.470 0.016 -4.288 N TMF 23
TMF CA CA C 0 1 N N R 39.861 73.640 40.774 0.384 0.126 -5.746 CA TMF 24
TMF CB CB C 0 1 N N N 38.993 72.638 40.066 -0.951 -0.447 -6.223 CB TMF 25
TMF CG CG C 0 1 N N N 37.922 73.263 39.176 -2.100 0.335 -5.583 CG TMF 26
TMF CD CD C 0 1 N N N 36.933 72.253 38.608 -3.416 -0.229 -6.053 CD TMF 27
TMF OE1 OE1 O 0 1 N N N 35.807 72.144 39.147 -3.433 -1.163 -6.820 OE1 TMF 28
TMF OE2 OE2 O 0 1 N N N 37.262 71.589 37.605 -4.568 0.303 -5.619 OE2 TMF 29
TMF CT CT C 0 1 N N N 40.925 74.222 39.835 1.515 -0.645 -6.376 CT TMF 30
TMF O1 O1 O 0 1 N N N 42.128 73.985 40.086 1.971 -0.289 -7.436 O1 TMF 31
TMF O2 O2 O 0 1 N N N 40.552 74.941 38.881 2.015 -1.726 -5.758 O2 TMF 32
TMF CP1 CP1 C 0 1 N N N 43.324 70.585 48.154 0.108 0.491 2.539 CP1 TMF 33
TMF HN1 HN1 H 0 1 N N N 46.630 72.863 51.864 0.315 -0.588 8.173 HN1 TMF 34
TMF HN21 1HN2 H 0 0 N N N 49.613 71.335 50.883 -2.954 0.430 8.889 HN21 TMF 35
TMF HN22 2HN2 H 0 0 N N N 48.709 71.005 52.230 -1.507 -0.109 9.551 HN22 TMF 36
TMF H6 H6 H 0 1 N N N 42.761 73.317 49.471 0.820 -2.275 3.512 H6 TMF 37
TMF H7 H7 H 0 1 N N N 42.135 71.868 51.820 3.185 -1.471 4.746 H7 TMF 38
TMF H91 1H9 H 0 1 N N N 41.244 70.765 50.012 3.070 -0.875 2.490 H91 TMF 39
TMF H92 2H9 H 0 1 N N N 40.687 72.154 49.268 1.734 -1.555 1.510 H92 TMF 40
TMF H12 H12 H 0 1 N N N 42.331 71.820 43.465 2.506 2.554 -1.895 H12 TMF 41
TMF H13 H13 H 0 1 N N N 43.221 70.919 45.614 2.647 2.366 0.549 H13 TMF 42
TMF H15 H15 H 0 1 N N N 39.716 72.428 47.717 0.196 -1.141 0.429 H15 TMF 43
TMF H16 H16 H 0 1 N N N 38.840 73.323 45.576 0.044 -0.958 -2.014 H16 TMF 44
TMF HN HN H 0 1 N N N 41.481 72.783 42.045 0.017 -0.708 -3.828 HN TMF 45
TMF HA HA H 0 1 N N N 39.189 74.466 41.102 0.453 1.174 -6.036 HA TMF 46
TMF HB1 1HB H 0 1 N N N 39.617 71.922 39.482 -1.015 -0.365 -7.308 HB1 TMF 47
TMF HB2 2HB H 0 1 N N N 38.532 71.933 40.797 -1.021 -1.496 -5.933 HB2 TMF 48
TMF HG1 1HG H 0 1 N N N 37.386 74.077 39.717 -2.036 0.253 -4.498 HG1 TMF 49
TMF HG2 2HG H 0 1 N N N 38.389 73.859 38.357 -2.030 1.383 -5.873 HG2 TMF 50
TMF HOE2 2HOE H 0 0 N N N 36.645 70.959 37.250 -5.413 -0.058 -5.920 HOE2 TMF 51
TMF HO2 HO2 H 0 1 N N N 41.211 75.301 38.299 2.741 -2.221 -6.162 HO2 TMF 52
TMF HCP1 1HCP H 0 0 N N N 43.849 70.350 47.199 -0.239 1.508 2.716 HCP1 TMF 53
TMF HCP2 2HCP H 0 0 N N N 43.462 69.596 48.651 -0.551 -0.024 1.842 HCP2 TMF 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TMF N1 C2 SING Y N 1
TMF N1 C8A SING Y N 2
TMF N1 HN1 SING N N 3
TMF C2 NA2 SING N N 4
TMF C2 N3 DOUB Y N 5
TMF NA2 HN21 SING N N 6
TMF NA2 HN22 SING N N 7
TMF N3 C4 SING Y N 8
TMF C4 O4 DOUB N N 9
TMF C4 C4A SING Y N 10
TMF C4A N5 SING N N 11
TMF C4A C8A DOUB Y N 12
TMF N5 C6 SING N N 13
TMF N5 CP1 SING N N 14
TMF C6 C7 SING N N 15
TMF C6 C9 SING N N 16
TMF C6 H6 SING N N 17
TMF C7 N8 DOUB N N 18
TMF C7 H7 SING N N 19
TMF N8 C8A SING N N 20
TMF C9 N10 SING N N 21
TMF C9 H91 SING N N 22
TMF C9 H92 SING N N 23
TMF N10 C14 SING N N 24
TMF N10 CP1 SING N N 25
TMF C11 C12 DOUB Y N 26
TMF C11 C16 SING Y N 27
TMF C11 C SING N N 28
TMF C12 C13 SING Y N 29
TMF C12 H12 SING N N 30
TMF C13 C14 DOUB Y N 31
TMF C13 H13 SING N N 32
TMF C14 C15 SING Y N 33
TMF C15 C16 DOUB Y N 34
TMF C15 H15 SING N N 35
TMF C16 H16 SING N N 36
TMF C O DOUB N N 37
TMF C N SING N N 38
TMF N CA SING N N 39
TMF N HN SING N N 40
TMF CA CB SING N N 41
TMF CA CT SING N N 42
TMF CA HA SING N N 43
TMF CB CG SING N N 44
TMF CB HB1 SING N N 45
TMF CB HB2 SING N N 46
TMF CG CD SING N N 47
TMF CG HG1 SING N N 48
TMF CG HG2 SING N N 49
TMF CD OE1 DOUB N N 50
TMF CD OE2 SING N N 51
TMF OE2 HOE2 SING N N 52
TMF CT O1 DOUB N N 53
TMF CT O2 SING N N 54
TMF O2 HO2 SING N N 55
TMF CP1 HCP1 SING N N 56
TMF CP1 HCP2 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TMF SMILES ACDLabs 10.04 "O=C(O)C(NC(=O)c1ccc(cc1)N3CN2C4=C(N=CC2C3)NC(=NC4=O)N)CCC(=O)O"
TMF SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)C2=C(N1)N=C[C@@H]3CN(CN23)c4ccc(cc4)C(=O)N[C@H](CCC(O)=O)C(O)=O"
TMF SMILES CACTVS 3.341 "NC1=NC(=O)C2=C(N1)N=C[CH]3CN(CN23)c4ccc(cc4)C(=O)N[CH](CCC(O)=O)C(O)=O"
TMF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=O)N[C@H](CCC(=O)O)C(=O)O)[N@@]2C[C@H]3C=NC4=C([N@]3C2)C(=O)N=C(N4)N"
TMF SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)N2CC3C=NC4=C(N3C2)C(=O)N=C(N4)N"
TMF InChI InChI 1.03
"InChI=1S/C20H21N7O6/c21-20-24-16-15(18(31)25-20)27-9-26(8-12(27)7-22-16)11-3-1-10(2-4-11)17(30)23-13(19(32)33)5-6-14(28)29/h1-4,7,12-13H,5-6,8-9H2,(H,23,30)(H,28,29)(H,32,33)(H3,21,24,25,31)/t12-,13-/m1/s1"
TMF InChIKey InChI 1.03 BHJAPJNOACHPNI-CHWSQXEVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TMF "SYSTEMATIC NAME" ACDLabs 10.04 "N-({4-[(6aS)-3-amino-1-oxo-1,4,6a,7-tetrahydroimidazo[1,5-f]pteridin-8(9H)-yl]phenyl}carbonyl)-D-glutamic acid"
TMF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-[[4-[(6aS,8S,10S)-3-amino-1-oxo-4,6a,7,9-tetrahydroimidazo[3,4-f]pteridin-8-yl]phenyl]carbonylamino]pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TMF "Create component" 1999-07-08 EBI
TMF "Modify descriptor" 2011-06-04 RCSB
#