data_TMP # _chem_comp.id TMP _chem_comp.name "THYMIDINE-5'-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H15 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 322.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TMP P P P 0 1 N N N 45.415 4.430 26.305 -4.171 1.004 -0.095 P TMP 1 TMP O1P O1P O 0 1 N N N 46.606 4.327 27.255 -3.667 1.760 1.073 O1P TMP 2 TMP O2P O2P O 0 1 N N N 45.614 5.584 25.151 -4.872 2.018 -1.130 O2P TMP 3 TMP O3P O3P O 0 1 N Y N 44.067 4.465 27.094 -5.245 -0.090 0.397 O3P TMP 4 TMP "O5'" O5* O 0 1 N N N 45.365 3.081 25.422 -2.943 0.259 -0.823 "O5'" TMP 5 TMP "C5'" C5* C 0 1 N N N 45.033 1.810 25.970 -2.291 -0.533 0.172 "C5'" TMP 6 TMP "C4'" C4* C 0 1 N N R 45.448 0.687 25.041 -1.108 -1.271 -0.457 "C4'" TMP 7 TMP "O4'" O4* O 0 1 N N N 44.508 0.694 23.958 -0.042 -0.349 -0.780 "O4'" TMP 8 TMP "C3'" C3* C 0 1 N N S 46.841 0.864 24.486 -0.458 -2.235 0.568 "C3'" TMP 9 TMP "O3'" O3* O 0 1 N N N 47.460 -0.410 24.295 -1.123 -3.500 0.571 "O3'" TMP 10 TMP "C2'" C2* C 0 1 N N N 46.621 1.474 23.104 0.983 -2.369 0.018 "C2'" TMP 11 TMP "C1'" C1* C 0 1 N N R 45.236 0.934 22.769 1.166 -1.124 -0.870 "C1'" TMP 12 TMP N1 N1 N 0 1 N N N 44.448 1.873 21.942 2.302 -0.332 -0.392 N1 TMP 13 TMP C2 C2 C 0 1 N N N 44.375 1.683 20.603 2.249 0.242 0.824 C2 TMP 14 TMP O2 O2 O 0 1 N N N 45.003 0.734 20.067 1.257 0.097 1.513 O2 TMP 15 TMP N3 N3 N 0 1 N N N 43.690 2.528 19.843 3.279 0.973 1.289 N3 TMP 16 TMP C4 C4 C 0 1 N N N 43.022 3.574 20.330 4.387 1.139 0.540 C4 TMP 17 TMP O4 O4 O 0 1 N N N 42.365 4.354 19.615 5.319 1.801 0.960 O4 TMP 18 TMP C5 C5 C 0 1 N N N 43.074 3.820 21.771 4.454 0.545 -0.743 C5 TMP 19 TMP C5M C5M C 0 1 N N N 42.347 4.984 22.405 5.680 0.719 -1.602 C5M TMP 20 TMP C6 C6 C 0 1 N N N 43.822 2.941 22.516 3.407 -0.184 -1.185 C6 TMP 21 TMP HOP2 2HOP H 0 0 N N N 45.652 6.440 25.562 -5.601 2.442 -0.655 HOP2 TMP 22 TMP HOP3 3HOP H 0 0 N N N 44.246 4.472 28.027 -5.548 -0.559 -0.393 HOP3 TMP 23 TMP "H5'1" 1H5* H 0 0 N N N 45.555 1.689 26.931 -2.997 -1.258 0.578 "H5'1" TMP 24 TMP "H5'2" 2H5* H 0 0 N N N 43.943 1.764 26.109 -1.932 0.113 0.973 "H5'2" TMP 25 TMP "H4'" H4* H 0 1 N N N 45.455 -0.260 25.600 -1.426 -1.814 -1.347 "H4'" TMP 26 TMP "H3'" H3* H 0 1 N N N 47.471 1.470 25.154 -0.455 -1.797 1.566 "H3'" TMP 27 TMP "HO3'" *HO3 H 0 0 N N N 47.597 -0.560 23.367 -0.617 -4.080 1.157 "HO3'" TMP 28 TMP "H2'1" 1H2* H 0 0 N N N 46.650 2.573 23.121 1.082 -3.279 -0.574 "H2'1" TMP 29 TMP "H2'2" 2H2* H 0 0 N N N 47.397 1.216 22.368 1.704 -2.364 0.835 "H2'2" TMP 30 TMP "H1'" H1* H 0 1 N N N 45.393 0.005 22.201 1.335 -1.427 -1.904 "H1'" TMP 31 TMP HN3 HN3 H 0 1 N N N 43.674 2.372 18.855 3.224 1.380 2.168 HN3 TMP 32 TMP H51 1H5 H 0 1 N N N 42.170 4.771 23.470 5.564 1.605 -2.227 H51 TMP 33 TMP H52 2H5 H 0 1 N N N 42.958 5.894 22.310 6.557 0.836 -0.965 H52 TMP 34 TMP H53 3H5 H 0 1 N N N 41.383 5.135 21.897 5.806 -0.159 -2.237 H53 TMP 35 TMP H6 H6 H 0 1 N N N 43.917 3.099 23.580 3.441 -0.648 -2.159 H6 TMP 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TMP P O1P DOUB N N 1 TMP P O2P SING N N 2 TMP P O3P SING N N 3 TMP P "O5'" SING N N 4 TMP O2P HOP2 SING N N 5 TMP O3P HOP3 SING N N 6 TMP "O5'" "C5'" SING N N 7 TMP "C5'" "C4'" SING N N 8 TMP "C5'" "H5'1" SING N N 9 TMP "C5'" "H5'2" SING N N 10 TMP "C4'" "O4'" SING N N 11 TMP "C4'" "C3'" SING N N 12 TMP "C4'" "H4'" SING N N 13 TMP "O4'" "C1'" SING N N 14 TMP "C3'" "O3'" SING N N 15 TMP "C3'" "C2'" SING N N 16 TMP "C3'" "H3'" SING N N 17 TMP "O3'" "HO3'" SING N N 18 TMP "C2'" "C1'" SING N N 19 TMP "C2'" "H2'1" SING N N 20 TMP "C2'" "H2'2" SING N N 21 TMP "C1'" N1 SING N N 22 TMP "C1'" "H1'" SING N N 23 TMP N1 C2 SING N N 24 TMP N1 C6 SING N N 25 TMP C2 O2 DOUB N N 26 TMP C2 N3 SING N N 27 TMP N3 C4 SING N N 28 TMP N3 HN3 SING N N 29 TMP C4 O4 DOUB N N 30 TMP C4 C5 SING N N 31 TMP C5 C5M SING N N 32 TMP C5 C6 DOUB N N 33 TMP C5M H51 SING N N 34 TMP C5M H52 SING N N 35 TMP C5M H53 SING N N 36 TMP C6 H6 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TMP SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)COP(=O)(O)O" TMP SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O" TMP SMILES CACTVS 3.341 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O" TMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O" TMP SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)O)O" TMP InChI InChI 1.03 "InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(20-8)4-19-21(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1" TMP InChIKey InChI 1.03 GYOZYWVXFNDGLU-XLPZGREQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TMP "SYSTEMATIC NAME" ACDLabs 10.04 ;5'-thymidylic acid ; TMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TMP "Create component" 1999-07-08 EBI TMP "Modify descriptor" 2011-06-04 RCSB #