data_TMR # _chem_comp.id TMR _chem_comp.name "2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose" _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H14 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2,6-DIDEOXY-4-THIOMETHYL-BETA-D-RIBOHEXOPYRANOSIDE; 2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexose; 2,6-dideoxy-4-S-methyl-4-thio-D-ribo-hexose; 2,6-dideoxy-4-S-methyl-4-thio-ribo-hexose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 178.249 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TMR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TMR "2,6-DIDEOXY-4-THIOMETHYL-BETA-D-RIBOHEXOPYRANOSIDE" PDB ? 2 TMR "2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexose" PDB ? 3 TMR "2,6-dideoxy-4-S-methyl-4-thio-D-ribo-hexose" PDB ? 4 TMR "2,6-dideoxy-4-S-methyl-4-thio-ribo-hexose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TMR C1 C1 C 0 1 N N R -5.558 2.302 4.500 0.226 -0.146 -2.145 C1 TMR 1 TMR C2 C2 C 0 1 N N N -4.126 1.811 4.781 1.322 0.584 -1.366 C2 TMR 2 TMR C3 C3 C 0 1 N N S -4.118 0.295 4.808 1.244 0.177 0.109 C3 TMR 3 TMR C4 C4 C 0 1 N N S -5.236 -0.185 5.753 -0.184 0.418 0.609 C4 TMR 4 TMR C5 C5 C 0 1 N N R -6.596 0.347 5.267 -1.166 -0.299 -0.319 C5 TMR 5 TMR C6 C6 C 0 1 N N N -7.774 -0.146 6.118 -2.594 -0.090 0.190 C6 TMR 6 TMR C7 C7 C 0 1 N N N -5.213 -2.384 7.534 0.895 0.768 3.146 C7 TMR 7 TMR O1 O1 O 0 1 N Y N -5.517 3.663 4.810 0.312 0.205 -3.527 O1 TMR 8 TMR O3 O3 O 0 1 N N N -4.297 -0.078 3.447 1.573 -1.206 0.244 O3 TMR 9 TMR O5 O5 O 0 1 N N N -6.516 1.743 5.388 -1.054 0.225 -1.640 O5 TMR 10 TMR S4 S4 S 0 1 N N N -5.190 -1.996 5.781 -0.355 -0.231 2.294 S4 TMR 11 TMR H1 H1 H 0 1 N N N -5.880 2.095 3.480 0.360 -1.222 -2.036 H1 TMR 12 TMR H2 H21 H 0 1 N N N -3.765 2.173 5.743 2.298 0.312 -1.768 H2 TMR 13 TMR H22 H22 H 0 1 N N N -3.414 2.193 4.049 1.177 1.661 -1.455 H22 TMR 14 TMR H3 H3 H 0 1 N N N -3.149 -0.014 5.202 1.943 0.778 0.691 H3 TMR 15 TMR H4 H4 H 0 1 N N N -4.999 0.331 6.684 -0.396 1.487 0.607 H4 TMR 16 TMR H5 H5 H 0 1 N N N -6.760 0.142 4.209 -0.939 -1.365 -0.332 H5 TMR 17 TMR H61 H61 H 0 1 N N N -8.725 0.231 5.742 -3.294 -0.601 -0.469 H61 TMR 18 TMR H62 H62 H 0 1 N N N -7.703 0.182 7.155 -2.683 -0.495 1.198 H62 TMR 19 TMR H63 H63 H 0 1 N N N -7.846 -1.233 6.133 -2.821 0.975 0.206 H63 TMR 20 TMR H71 H71 H 0 1 N N N -5.685 -3.357 7.674 0.922 0.494 4.201 H71 TMR 21 TMR H72 H72 H 0 1 N N N -4.200 -2.456 7.928 1.872 0.586 2.698 H72 TMR 22 TMR H73 H73 H 0 1 N N N -5.794 -1.671 8.120 0.642 1.824 3.051 H73 TMR 23 TMR HO1 HO1 H 0 1 N Y N -6.400 3.965 4.636 -0.389 -0.277 -3.983 HO1 TMR 24 TMR HO3 HO3 H 0 1 N Y N -4.142 -1.007 3.340 2.473 -1.313 -0.093 HO3 TMR 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TMR C1 C2 SING N N 1 TMR C1 O1 SING N N 2 TMR C1 O5 SING N N 3 TMR C1 H1 SING N N 4 TMR C2 C3 SING N N 5 TMR C2 H2 SING N N 6 TMR C2 H22 SING N N 7 TMR C3 C4 SING N N 8 TMR C3 O3 SING N N 9 TMR C3 H3 SING N N 10 TMR C4 C5 SING N N 11 TMR C4 S4 SING N N 12 TMR C4 H4 SING N N 13 TMR C5 C6 SING N N 14 TMR C5 O5 SING N N 15 TMR C5 H5 SING N N 16 TMR C6 H61 SING N N 17 TMR C6 H62 SING N N 18 TMR C6 H63 SING N N 19 TMR C7 S4 SING N N 20 TMR C7 H71 SING N N 21 TMR C7 H72 SING N N 22 TMR C7 H73 SING N N 23 TMR O1 HO1 SING N N 24 TMR O3 HO3 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TMR SMILES ACDLabs 10.04 "S(C1C(OC(O)CC1O)C)C" TMR SMILES_CANONICAL CACTVS 3.341 "CS[C@@H]1[C@@H](C)O[C@@H](O)C[C@@H]1O" TMR SMILES CACTVS 3.341 "CS[CH]1[CH](C)O[CH](O)C[CH]1O" TMR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H]([C@H](C[C@@H](O1)O)O)SC" TMR SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(C(CC(O1)O)O)SC" TMR InChI InChI 1.03 "InChI=1S/C7H14O3S/c1-4-7(11-2)5(8)3-6(9)10-4/h4-9H,3H2,1-2H3/t4-,5+,6-,7-/m1/s1" TMR InChIKey InChI 1.03 PUECVJLJBFVUMI-XZBKPIIZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TMR "SYSTEMATIC NAME" ACDLabs 10.04 "2,6-dideoxy-4-S-methyl-4-thio-beta-D-ribo-hexopyranose" TMR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,4S,5S,6R)-6-methyl-5-methylsulfanyl-oxane-2,4-diol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TMR "CARBOHYDRATE ISOMER" D PDB ? TMR "CARBOHYDRATE RING" pyranose PDB ? TMR "CARBOHYDRATE ANOMER" beta PDB ? TMR "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TMR "Create component" 1999-07-08 EBI TMR "Modify descriptor" 2011-06-04 RCSB TMR "Other modification" 2020-07-03 RCSB TMR "Modify name" 2020-07-17 RCSB TMR "Modify synonyms" 2020-07-17 RCSB TMR "Modify internal type" 2020-07-17 RCSB TMR "Modify linking type" 2020-07-17 RCSB TMR "Modify atom id" 2020-07-17 RCSB TMR "Modify component atom id" 2020-07-17 RCSB TMR "Modify leaving atom flag" 2020-07-17 RCSB ##