data_TNA
#
_chem_comp.id TNA
_chem_comp.name "N-[(3S)-3-{[(3S)-3-amino-3-carboxypropyl]amino}-3-carboxypropyl]-L-glutamic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H23 N3 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms thermonicotianamine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-01-07
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 349.337
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TNA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3FPE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TNA O8 O8 O 0 1 N N N 0.068 1.576 -1.929 -6.323 -1.733 1.105 O8 TNA 1
TNA C12 C12 C 0 1 N N N -0.481 2.424 -1.188 -5.244 -1.973 1.594 C12 TNA 2
TNA O7 O7 O 0 1 N N N -0.901 2.110 -0.048 -5.164 -2.709 2.713 O7 TNA 3
TNA C10 C10 C 0 1 N N N -0.633 3.870 -1.622 -3.989 -1.451 0.943 C10 TNA 4
TNA C9 C9 C 0 1 N N N 0.017 4.257 -2.960 -4.357 -0.655 -0.310 C9 TNA 5
TNA C8 C8 C 0 1 N N S 1.542 4.099 -3.054 -3.083 -0.125 -0.971 C8 TNA 6
TNA C11 C11 C 0 1 N N N 2.278 4.581 -1.835 -3.435 0.553 -2.269 C11 TNA 7
TNA O6 O6 O 0 1 N N N 3.226 3.887 -1.446 -3.171 1.721 -2.432 O6 TNA 8
TNA O5 O5 O 0 1 N N N 1.938 5.635 -1.254 -4.042 -0.140 -3.246 O5 TNA 9
TNA N3 N3 N 0 1 N N N 1.912 2.714 -3.369 -2.432 0.840 -0.075 N3 TNA 10
TNA C7 C7 C 0 1 N N N 1.934 2.215 -4.754 -0.991 0.924 -0.348 C7 TNA 11
TNA C6 C6 C 0 1 N N N 1.383 0.793 -4.851 -0.350 1.936 0.602 C6 TNA 12
TNA C4 C4 C 0 1 N N S 1.459 0.173 -6.246 1.151 2.024 0.317 C4 TNA 13
TNA C5 C5 C 0 1 N N N 2.500 -0.919 -6.163 1.762 3.108 1.167 C5 TNA 14
TNA O3 O3 O 0 1 N N N 2.097 -2.075 -5.882 1.335 4.375 1.048 O3 TNA 15
TNA O4 O4 O 0 1 N N N 3.699 -0.605 -6.394 2.636 2.837 1.956 O4 TNA 16
TNA N2 N2 N 0 1 N N N 0.155 -0.317 -6.694 1.786 0.737 0.634 N2 TNA 17
TNA C3 C3 C 0 1 N N N -0.003 -1.170 -7.871 3.023 0.557 -0.136 C3 TNA 18
TNA C2 C2 C 0 1 N N N 0.880 -0.716 -9.048 3.654 -0.791 0.220 C2 TNA 19
TNA C1 C1 C 0 1 N N S 0.275 0.570 -9.639 4.943 -0.979 -0.582 C1 TNA 20
TNA N1 N1 N 0 1 N N N -0.791 0.196 -10.574 4.621 -1.066 -2.013 N1 TNA 21
TNA C C C 0 1 N N N 1.360 1.404 -10.285 5.628 -2.248 -0.143 C TNA 22
TNA O2 O2 O 0 1 N N N 2.385 1.662 -9.616 6.364 -2.259 0.979 O2 TNA 23
TNA O1 O1 O 0 1 N N N 1.187 1.828 -11.441 5.514 -3.255 -0.801 O1 TNA 24
TNA HO7 HO7 H 0 1 N N N -0.729 1.189 0.111 -5.996 -3.025 3.092 HO7 TNA 25
TNA H10 H10 H 0 1 N N N -1.711 4.070 -1.714 -3.460 -0.804 1.642 H10 TNA 26
TNA H10A H10A H 0 0 N N N -0.111 4.464 -0.858 -3.348 -2.288 0.667 H10A TNA 27
TNA H9 H9 H 0 1 N N N -0.425 3.612 -3.734 -4.886 -1.303 -1.010 H9 TNA 28
TNA H9A H9A H 0 1 N N N -0.176 5.333 -3.081 -4.998 0.182 -0.034 H9A TNA 29
TNA H8 H8 H 0 1 N N N 1.858 4.753 -3.880 -2.403 -0.955 -1.166 H8 TNA 30
TNA HO5 HO5 H 0 1 N N N 2.510 5.786 -0.510 -4.248 0.338 -4.061 HO5 TNA 31
TNA HN3 HN3 H 0 1 N N N 2.845 2.601 -3.028 -2.867 1.748 -0.144 HN3 TNA 32
TNA H7 H7 H 0 1 N N N 1.315 2.877 -5.378 -0.535 -0.055 -0.198 H7 TNA 33
TNA H7A H7A H 0 1 N N N 2.978 2.204 -5.099 -0.835 1.243 -1.379 H7A TNA 34
TNA H6 H6 H 0 1 N N N 1.969 0.159 -4.169 -0.805 2.915 0.452 H6 TNA 35
TNA H6A H6A H 0 1 N N N 0.316 0.851 -4.591 -0.506 1.617 1.633 H6A TNA 36
TNA H4 H4 H 0 1 N N N 1.747 0.918 -7.002 1.308 2.257 -0.736 H4 TNA 37
TNA HO3 HO3 H 0 1 N N N 2.834 -2.674 -5.871 1.757 5.035 1.615 HO3 TNA 38
TNA HN2 HN2 H 0 1 N N N -0.203 -0.853 -5.929 1.961 0.655 1.624 HN2 TNA 39
TNA H3 H3 H 0 1 N N N 0.280 -2.197 -7.598 2.795 0.581 -1.202 H3 TNA 40
TNA H3A H3A H 0 1 N N N -1.053 -1.108 -8.194 3.721 1.359 0.104 H3A TNA 41
TNA H2 H2 H 0 1 N N N 1.903 -0.519 -8.694 3.882 -0.815 1.286 H2 TNA 42
TNA H2A H2A H 0 1 N N N 0.920 -1.503 -9.816 2.956 -1.593 -0.020 H2A TNA 43
TNA H1 H1 H 0 1 N N N -0.169 1.195 -8.850 5.605 -0.130 -0.410 H1 TNA 44
TNA HN1 HN1 H 0 1 N N N -1.655 0.111 -10.078 5.461 -1.126 -2.569 HN1 TNA 45
TNA HN1A HN1A H 0 0 N N N -0.879 0.901 -11.278 4.008 -1.846 -2.199 HN1A TNA 46
TNA HO2 HO2 H 0 1 N N N 2.969 2.209 -10.128 6.784 -3.096 1.221 HO2 TNA 47
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TNA O8 C12 DOUB N N 1
TNA C10 C12 SING N N 2
TNA C12 O7 SING N N 3
TNA O7 HO7 SING N N 4
TNA C9 C10 SING N N 5
TNA C10 H10 SING N N 6
TNA C10 H10A SING N N 7
TNA C8 C9 SING N N 8
TNA C9 H9 SING N N 9
TNA C9 H9A SING N N 10
TNA N3 C8 SING N N 11
TNA C8 C11 SING N N 12
TNA C8 H8 SING N N 13
TNA C11 O6 DOUB N N 14
TNA C11 O5 SING N N 15
TNA O5 HO5 SING N N 16
TNA C7 N3 SING N N 17
TNA N3 HN3 SING N N 18
TNA C6 C7 SING N N 19
TNA C7 H7 SING N N 20
TNA C7 H7A SING N N 21
TNA C4 C6 SING N N 22
TNA C6 H6 SING N N 23
TNA C6 H6A SING N N 24
TNA N2 C4 SING N N 25
TNA C4 C5 SING N N 26
TNA C4 H4 SING N N 27
TNA O4 C5 DOUB N N 28
TNA C5 O3 SING N N 29
TNA O3 HO3 SING N N 30
TNA C3 N2 SING N N 31
TNA N2 HN2 SING N N 32
TNA C2 C3 SING N N 33
TNA C3 H3 SING N N 34
TNA C3 H3A SING N N 35
TNA C1 C2 SING N N 36
TNA C2 H2 SING N N 37
TNA C2 H2A SING N N 38
TNA N1 C1 SING N N 39
TNA C C1 SING N N 40
TNA C1 H1 SING N N 41
TNA N1 HN1 SING N N 42
TNA N1 HN1A SING N N 43
TNA O1 C DOUB N N 44
TNA C O2 SING N N 45
TNA O2 HO2 SING N N 46
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TNA SMILES ACDLabs 10.04 "O=C(O)C(NCCC(NCCC(N)C(=O)O)C(=O)O)CCC(=O)O"
TNA SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCN[C@@H](CCN[C@@H](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O"
TNA SMILES CACTVS 3.341 "N[CH](CCN[CH](CCN[CH](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O"
TNA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)[C@@H](C(=O)O)NCC[C@@H](C(=O)O)NCC[C@@H](C(=O)O)N"
TNA SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)C(C(=O)O)NCCC(C(=O)O)NCCC(C(=O)O)N"
TNA InChI InChI 1.03 "InChI=1S/C13H23N3O8/c14-7(11(19)20)3-5-15-9(13(23)24)4-6-16-8(12(21)22)1-2-10(17)18/h7-9,15-16H,1-6,14H2,(H,17,18)(H,19,20)(H,21,22)(H,23,24)/t7-,8-,9-/m0/s1"
TNA InChIKey InChI 1.03 PCXSNYIAEDAACL-CIUDSAMLSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TNA "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(3S)-3-{[(3S)-3-amino-3-carboxypropyl]amino}-3-carboxypropyl]-L-glutamic acid"
TNA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(3S)-3-[[(3S)-3-amino-4-hydroxy-4-oxo-butyl]amino]-4-hydroxy-4-oxo-butyl]amino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TNA "Create component" 2009-01-07 PDBJ
TNA "Modify descriptor" 2011-06-04 RCSB
TNA "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TNA
_pdbx_chem_comp_synonyms.name thermonicotianamine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##