data_TND # _chem_comp.id TND _chem_comp.name "N-1,2,3,4-TETRAHYDRONAPHTH-1-YL-2'-[3,5-DIMETHOXYBENZAMIDO]-2'-DEOXY-ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H32 N6 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-02-21 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.601 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TND _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I33 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TND "C5'" C5* C 0 1 N N N 23.081 79.327 -1.223 -5.771 0.382 2.923 "C5'" TND 1 TND "C4'" C4* C 0 1 N N R 23.886 79.597 -2.511 -4.538 -0.480 2.648 "C4'" TND 2 TND "O4'" O4* O 0 1 N N N 23.153 80.381 -3.477 -4.181 -0.400 1.258 "O4'" TND 3 TND "C3'" C3* C 0 1 N N S 25.199 80.337 -2.269 -3.338 0.046 3.459 "C3'" TND 4 TND "O3'" O3* O 0 1 N N N 26.247 79.880 -3.124 -2.856 -0.957 4.355 "O3'" TND 5 TND "C2'" C2* C 0 1 N N R 24.777 81.789 -2.473 -2.270 0.373 2.388 "C2'" TND 6 TND "N2'" N2* N 0 1 N N N 25.855 82.759 -2.671 -0.937 -0.040 2.834 "N2'" TND 7 TND "C1'" C1* C 0 1 N N R 23.780 81.680 -3.638 -2.741 -0.483 1.185 "C1'" TND 8 TND N9A N9A N 0 1 Y N N 22.760 82.742 -3.706 -2.255 0.079 -0.076 N9A TND 9 TND C8A C8A C 0 1 Y N N 22.281 83.539 -2.691 -2.857 1.060 -0.807 C8A TND 10 TND N7A N7A N 0 1 Y N N 21.363 84.403 -3.066 -2.153 1.317 -1.871 N7A TND 11 TND C5A C5A C 0 1 Y N N 21.210 84.171 -4.426 -1.059 0.519 -1.891 C5A TND 12 TND C6A C6A C 0 1 Y N N 20.365 84.765 -5.451 0.027 0.353 -2.767 C6A TND 13 TND N6A N6A N 0 1 N N N 19.465 85.774 -5.246 0.132 1.117 -3.916 N6A TND 14 TND N1A N1A N 0 1 Y N N 20.480 84.270 -6.733 0.951 -0.552 -2.465 N1A TND 15 TND C2A C2A C 0 1 Y N N 21.363 83.267 -6.985 0.859 -1.285 -1.371 C2A TND 16 TND N3A N3A N 0 1 Y N N 22.193 82.647 -6.114 -0.139 -1.164 -0.522 N3A TND 17 TND C4A C4A C 0 1 Y N N 22.070 83.143 -4.846 -1.108 -0.280 -0.737 C4A TND 18 TND C1 C1 C 0 1 N N R 19.293 86.555 -4.001 1.272 0.930 -4.817 C1 TND 19 TND C9 C9 C 0 1 Y N N 19.388 88.077 -4.217 0.932 -0.125 -5.836 C9 TND 20 TND C8 C8 C 0 1 Y N N 19.915 88.668 -5.502 0.269 -1.262 -5.391 C8 TND 21 TND C7 C7 C 0 1 Y N N 19.982 90.161 -5.652 -0.064 -2.269 -6.272 C7 TND 22 TND C6 C6 C 0 1 Y N N 19.529 91.059 -4.533 0.266 -2.149 -7.609 C6 TND 23 TND C2 C2 C 0 1 N N N 17.980 86.137 -3.264 1.592 2.256 -5.506 C2 TND 24 TND C10 C10 C 0 1 Y N N 18.933 88.975 -3.099 1.259 -0.004 -7.167 C10 TND 25 TND C5 C5 C 0 1 Y N N 19.002 90.474 -3.250 0.925 -1.021 -8.053 C5 TND 26 TND C3 C3 C 0 1 N N N 17.498 87.094 -2.102 2.637 1.994 -6.597 C3 TND 27 TND C4 C4 C 0 1 N N N 18.398 88.336 -1.806 1.972 1.201 -7.720 C4 TND 28 TND C7B C7B C 0 1 N N N 26.249 83.663 -1.722 -0.126 0.845 3.446 C7B TND 29 TND O7B O7B O 0 1 N N N 25.706 83.706 -0.606 -0.501 1.987 3.628 O7B TND 30 TND C6B C6B C 0 1 Y N N 27.315 84.652 -2.064 1.218 0.427 3.897 C6B TND 31 TND C5B C5B C 0 1 Y N N 28.251 84.359 -3.113 1.651 -0.881 3.684 C5B TND 32 TND C4B C4B C 0 1 Y N N 29.292 85.301 -3.464 2.910 -1.270 4.112 C4B TND 33 TND O2M O2M O 0 1 N N N 30.195 84.993 -4.483 3.332 -2.546 3.910 O2M TND 34 TND C2M C2M C 0 1 N N N 30.103 83.750 -5.205 4.652 -2.635 4.448 C2M TND 35 TND C3B C3B C 0 1 Y N N 29.362 86.539 -2.737 3.743 -0.357 4.743 C3B TND 36 TND C1B C1B C 0 1 Y N N 27.406 85.898 -1.346 2.059 1.342 4.531 C1B TND 37 TND C2B C2B C 0 1 Y N N 28.423 86.853 -1.672 3.318 0.946 4.952 C2B TND 38 TND O1M O1M O 0 1 N N N 28.435 88.029 -0.931 4.138 1.836 5.569 O1M TND 39 TND C1M C1M C 0 1 N N N 29.337 89.101 -1.281 5.347 1.139 5.878 C1M TND 40 TND "O5'" O5* O 0 1 N N N 23.947 78.851 -0.182 -6.877 -0.113 2.167 "O5'" TND 41 TND "H5'1" 1H5* H 0 0 N N N 22.498 80.222 -0.901 -6.011 0.345 3.986 "H5'1" TND 42 TND "H5'2" 2H5* H 0 0 N N N 22.228 78.631 -1.404 -5.565 1.413 2.633 "H5'2" TND 43 TND "H4'" H4* H 0 1 N N N 24.089 78.572 -2.900 -4.742 -1.515 2.920 "H4'" TND 44 TND "H3'" H3* H 0 1 N N N 25.653 80.171 -1.264 -3.615 0.946 4.009 "H3'" TND 45 TND "HO3'" *HO3 H 0 0 N N N 27.064 80.340 -2.973 -3.561 -1.119 4.997 "HO3'" TND 46 TND "H2'" H2* H 0 1 N N N 24.333 82.227 -1.548 -2.282 1.434 2.138 "H2'" TND 47 TND "HN2'" *HN2 H 0 0 N N N 26.376 82.809 -3.546 -0.639 -0.951 2.689 "HN2'" TND 48 TND "H1'" H1* H 0 1 N N N 24.334 81.800 -4.597 -2.410 -1.515 1.297 "H1'" TND 49 TND H8A H8A H 0 1 N N N 22.612 83.488 -1.640 -3.781 1.552 -0.542 H8A TND 50 TND H6A H6A H 0 1 N N N 18.547 85.389 -5.471 -0.548 1.775 -4.125 H6A TND 51 TND H2A H2A H 0 1 N N N 21.412 82.911 -8.027 1.632 -2.010 -1.164 H2A TND 52 TND H1 H1 H 0 1 N N N 20.153 86.304 -3.338 2.138 0.608 -4.240 H1 TND 53 TND H8 H8 H 0 1 N N N 20.248 88.013 -6.325 0.011 -1.358 -4.346 H8 TND 54 TND H7 H7 H 0 1 N N N 20.365 90.600 -6.588 -0.582 -3.149 -5.919 H7 TND 55 TND H6 H6 H 0 1 N N N 19.583 92.154 -4.654 0.009 -2.935 -8.304 H6 TND 56 TND H21 1H2 H 0 1 N N N 17.158 86.000 -4.005 0.686 2.664 -5.955 H21 TND 57 TND H22 2H2 H 0 1 N N N 18.079 85.095 -2.878 1.991 2.961 -4.777 H22 TND 58 TND H5 H5 H 0 1 N N N 18.670 91.134 -2.431 1.182 -0.927 -9.097 H5 TND 59 TND H31 1H3 H 0 1 N N N 16.452 87.426 -2.298 3.007 2.942 -6.986 H31 TND 60 TND H32 2H3 H 0 1 N N N 17.351 86.504 -1.166 3.465 1.419 -6.182 H32 TND 61 TND H41 1H4 H 0 1 N N N 19.227 88.078 -1.106 1.253 1.839 -8.234 H41 TND 62 TND H42 2H4 H 0 1 N N N 17.863 89.083 -1.174 2.733 0.874 -8.429 H42 TND 63 TND H5B H5B H 0 1 N N N 28.169 83.401 -3.654 1.003 -1.593 3.194 H5B TND 64 TND H2M1 1H2M H 0 0 N N N 30.824 83.504 -6.018 5.034 -3.646 4.307 H2M1 TND 65 TND H2M2 2H2M H 0 0 N N N 30.119 82.917 -4.463 5.302 -1.927 3.934 H2M2 TND 66 TND H2M3 3H2M H 0 0 N N N 29.071 83.665 -5.619 4.628 -2.400 5.512 H2M3 TND 67 TND H3B H3B H 0 1 N N N 30.151 87.262 -3.001 4.725 -0.662 5.072 H3B TND 68 TND H1B H1B H 0 1 N N N 26.689 86.123 -0.538 1.728 2.357 4.694 H1B TND 69 TND H1M1 1H1M H 0 0 N N N 29.346 90.044 -0.686 6.039 1.817 6.377 H1M1 TND 70 TND H1M2 2H1M H 0 0 N N N 30.374 88.692 -1.307 5.124 0.298 6.534 H1M2 TND 71 TND H1M3 3H1M H 0 0 N N N 29.171 89.362 -2.352 5.799 0.771 4.957 H1M3 TND 72 TND "HO5'" *HO5 H 0 0 N N N 23.451 78.684 0.611 -7.632 0.457 2.369 "HO5'" TND 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TND "C5'" "C4'" SING N N 1 TND "C5'" "O5'" SING N N 2 TND "C5'" "H5'1" SING N N 3 TND "C5'" "H5'2" SING N N 4 TND "C4'" "O4'" SING N N 5 TND "C4'" "C3'" SING N N 6 TND "C4'" "H4'" SING N N 7 TND "O4'" "C1'" SING N N 8 TND "C3'" "O3'" SING N N 9 TND "C3'" "C2'" SING N N 10 TND "C3'" "H3'" SING N N 11 TND "O3'" "HO3'" SING N N 12 TND "C2'" "N2'" SING N N 13 TND "C2'" "C1'" SING N N 14 TND "C2'" "H2'" SING N N 15 TND "N2'" C7B SING N N 16 TND "N2'" "HN2'" SING N N 17 TND "C1'" N9A SING N N 18 TND "C1'" "H1'" SING N N 19 TND N9A C8A SING Y N 20 TND N9A C4A SING Y N 21 TND C8A N7A DOUB Y N 22 TND C8A H8A SING N N 23 TND N7A C5A SING Y N 24 TND C5A C6A DOUB Y N 25 TND C5A C4A SING Y N 26 TND C6A N6A SING N N 27 TND C6A N1A SING Y N 28 TND N6A C1 SING N N 29 TND N6A H6A SING N N 30 TND N1A C2A DOUB Y N 31 TND C2A N3A SING Y N 32 TND C2A H2A SING N N 33 TND N3A C4A DOUB Y N 34 TND C1 C9 SING N N 35 TND C1 C2 SING N N 36 TND C1 H1 SING N N 37 TND C9 C8 SING Y N 38 TND C9 C10 DOUB Y N 39 TND C8 C7 DOUB Y N 40 TND C8 H8 SING N N 41 TND C7 C6 SING Y N 42 TND C7 H7 SING N N 43 TND C6 C5 DOUB Y N 44 TND C6 H6 SING N N 45 TND C2 C3 SING N N 46 TND C2 H21 SING N N 47 TND C2 H22 SING N N 48 TND C10 C5 SING Y N 49 TND C10 C4 SING N N 50 TND C5 H5 SING N N 51 TND C3 C4 SING N N 52 TND C3 H31 SING N N 53 TND C3 H32 SING N N 54 TND C4 H41 SING N N 55 TND C4 H42 SING N N 56 TND C7B O7B DOUB N N 57 TND C7B C6B SING N N 58 TND C6B C5B DOUB Y N 59 TND C6B C1B SING Y N 60 TND C5B C4B SING Y N 61 TND C5B H5B SING N N 62 TND C4B O2M SING N N 63 TND C4B C3B DOUB Y N 64 TND O2M C2M SING N N 65 TND C2M H2M1 SING N N 66 TND C2M H2M2 SING N N 67 TND C2M H2M3 SING N N 68 TND C3B C2B SING Y N 69 TND C3B H3B SING N N 70 TND C1B C2B DOUB Y N 71 TND C1B H1B SING N N 72 TND C2B O1M SING N N 73 TND O1M C1M SING N N 74 TND C1M H1M1 SING N N 75 TND C1M H1M2 SING N N 76 TND C1M H1M3 SING N N 77 TND "O5'" "HO5'" SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TND SMILES ACDLabs 10.04 "O=C(c1cc(OC)cc(OC)c1)NC6C(O)C(OC6n3cnc2c(ncnc23)NC5c4ccccc4CCC5)CO" TND SMILES_CANONICAL CACTVS 3.341 "COc1cc(OC)cc(c1)C(=O)N[C@@H]2[C@H](O)[C@@H](CO)O[C@H]2n3cnc4c(N[C@@H]5CCCc6ccccc56)ncnc34" TND SMILES CACTVS 3.341 "COc1cc(OC)cc(c1)C(=O)N[CH]2[CH](O)[CH](CO)O[CH]2n3cnc4c(N[CH]5CCCc6ccccc56)ncnc34" TND SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1cc(cc(c1)OC)C(=O)N[C@@H]2[C@@H]([C@H](O[C@H]2n3cnc4c3ncnc4N[C@@H]5CCCc6c5cccc6)CO)O" TND SMILES "OpenEye OEToolkits" 1.5.0 "COc1cc(cc(c1)OC)C(=O)NC2C(C(OC2n3cnc4c3ncnc4NC5CCCc6c5cccc6)CO)O" TND InChI InChI 1.03 ;InChI=1S/C29H32N6O6/c1-39-18-10-17(11-19(12-18)40-2)28(38)34-23-25(37)22(13-36)41-29(23)35-15-32-24-26(30-14-31-27(24)35)33-21-9-5-7-16-6-3-4-8-20(16)21/h3-4,6,8,10-12,14-15,21-23,25,29,36-37H,5,7,9,13H2,1-2H3,(H,34,38)(H,30,31,33)/t21-,22-,23-,25-,29-/m1/s1 ; TND InChIKey InChI 1.03 FDZQGEIYGFPMOB-ZUURFMEUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TND "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-2'-{[(3,5-dimethoxyphenyl)carbonyl]amino}-N-[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]adenosine" TND "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2R,3R,4S,5R)-4-hydroxy-5-(hydroxymethyl)-2-[6-[[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]amino]purin-9-yl]oxolan-3-yl]-3,5-dimethoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TND "Create component" 2001-02-21 EBI TND "Modify descriptor" 2011-06-04 RCSB #