data_TNK # _chem_comp.id TNK _chem_comp.name "6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 364.438 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TNK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RT2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TNK C1 C1 C 0 1 Y N N -1.210 -34.512 26.598 1.974 0.924 0.844 C1 TNK 1 TNK C2 C2 C 0 1 Y N N -1.706 -33.843 27.700 2.064 1.048 -0.529 C2 TNK 2 TNK C3 C3 C 0 1 Y N N -0.901 -32.971 28.424 3.044 0.364 -1.222 C3 TNK 3 TNK C4 C4 C 0 1 Y N N 0.410 -32.759 28.051 3.936 -0.444 -0.541 C4 TNK 4 TNK C5 C5 C 0 1 Y N N 0.921 -33.417 26.948 3.847 -0.567 0.832 C5 TNK 5 TNK C6 C6 C 0 1 Y N N 0.110 -34.291 26.223 2.869 0.120 1.526 C6 TNK 6 TNK C7 C7 C 0 1 N N N -1.806 -35.593 24.390 -0.332 0.815 1.695 C7 TNK 7 TNK N8 N8 N 0 1 N N N -2.573 -34.877 23.531 -1.315 0.922 0.749 N8 TNK 8 TNK C9 C9 C 0 1 N N N -2.470 -35.029 22.130 -2.423 0.162 0.824 C9 TNK 9 TNK O9 O9 O 0 1 N N N -3.143 -34.409 21.323 -3.284 0.273 -0.027 O9 TNK 10 TNK N10 N10 N 0 1 N N N -1.547 -35.927 21.682 -2.592 -0.717 1.828 N10 TNK 11 TNK C11 C11 C 0 1 N N N -0.718 -36.681 22.467 -1.645 -0.855 2.778 C11 TNK 12 TNK O11 O11 O 0 1 N N N 0.085 -37.431 21.923 -1.797 -1.651 3.687 O11 TNK 13 TNK C12 C12 C 0 1 N N N -0.896 -36.466 23.918 -0.476 -0.058 2.713 C12 TNK 14 TNK C13 C13 C 0 1 N N N -2.067 -35.485 25.871 0.905 1.670 1.600 C13 TNK 15 TNK C14 C14 C 0 1 N N N -0.019 -37.266 24.848 0.595 -0.190 3.764 C14 TNK 16 TNK C15 C15 C 0 1 N N N -0.578 -38.637 25.127 0.016 0.175 5.132 C15 TNK 17 TNK C16 C16 C 0 1 N N N 1.456 -37.292 24.428 1.105 -1.632 3.795 C16 TNK 18 TNK C17 C17 C 0 1 N N N -3.517 -33.915 24.082 -1.159 1.871 -0.355 C17 TNK 19 TNK O17 O17 O 0 1 N N N -4.776 -34.107 23.502 -0.499 1.226 -1.447 O17 TNK 20 TNK C18 C18 C 0 1 N N N -5.909 -33.888 24.330 -1.519 0.652 -2.266 C18 TNK 21 TNK C19 C19 C 0 1 Y N N -6.989 -34.893 24.183 -0.886 -0.045 -3.442 C19 TNK 22 TNK C20 C20 C 0 1 Y N N -6.896 -35.868 23.190 -0.536 -1.379 -3.346 C20 TNK 23 TNK C21 C21 C 0 1 Y N N -7.842 -36.852 23.077 0.044 -2.020 -4.425 C21 TNK 24 TNK C22 C22 C 0 1 Y N N -8.907 -36.882 23.958 0.274 -1.327 -5.599 C22 TNK 25 TNK C23 C23 C 0 1 Y N N -9.020 -35.914 24.951 -0.077 0.006 -5.694 C23 TNK 26 TNK C24 C24 C 0 1 Y N N -8.058 -34.918 25.059 -0.661 0.645 -4.617 C24 TNK 27 TNK H2 H2 H 0 1 N N N -2.753 -34.006 28.004 1.367 1.679 -1.060 H2 TNK 28 TNK H3 H3 H 0 1 N N N -1.306 -32.442 29.303 3.114 0.460 -2.295 H3 TNK 29 TNK H4 H4 H 0 1 N N N 1.045 -32.068 28.630 4.701 -0.979 -1.083 H4 TNK 30 TNK H5 H5 H 0 1 N N N 1.968 -33.245 26.648 4.543 -1.199 1.364 H5 TNK 31 TNK H6 H6 H 0 1 N N N 0.517 -34.814 25.341 2.799 0.024 2.599 H6 TNK 32 TNK HN1 HN1 H 0 1 N N N -1.470 -36.045 20.671 -3.397 -1.256 1.867 HN1 TNK 33 TNK H131 1H13 H 0 0 N N N -1.993 -36.490 26.347 0.668 2.596 1.075 H131 TNK 34 TNK H132 2H13 H 0 0 N N N -3.143 -35.259 26.054 1.263 1.903 2.603 H132 TNK 35 TNK H14 H14 H 0 1 N N N -0.031 -36.719 25.820 1.420 0.481 3.528 H14 TNK 36 TNK H151 1H15 H 0 0 N N N 0.070 -39.228 25.814 0.792 0.080 5.893 H151 TNK 37 TNK H152 2H15 H 0 0 N N N -1.622 -38.574 25.513 -0.346 1.203 5.110 H152 TNK 38 TNK H153 3H15 H 0 0 N N N -0.771 -39.192 24.179 -0.808 -0.496 5.369 H153 TNK 39 TNK H161 1H16 H 0 0 N N N 2.104 -37.883 25.115 0.280 -2.304 4.032 H161 TNK 40 TNK H162 2H16 H 0 0 N N N 1.561 -37.653 23.378 1.518 -1.892 2.821 H162 TNK 41 TNK H163 3H16 H 0 0 N N N 1.850 -36.256 24.307 1.881 -1.727 4.555 H163 TNK 42 TNK H171 1H17 H 0 0 N N N -3.556 -33.955 25.195 -2.141 2.217 -0.678 H171 TNK 43 TNK H172 2H17 H 0 0 N N N -3.159 -32.864 23.972 -0.564 2.721 -0.022 H172 TNK 44 TNK H181 1H18 H 0 0 N N N -5.597 -33.808 25.397 -2.093 -0.066 -1.681 H181 TNK 45 TNK H182 2H18 H 0 0 N N N -6.312 -32.861 24.169 -2.183 1.440 -2.625 H182 TNK 46 TNK H20 H20 H 0 1 N N N -6.054 -35.860 22.477 -0.715 -1.920 -2.429 H20 TNK 47 TNK H21 H21 H 0 1 N N N -7.747 -37.612 22.284 0.319 -3.062 -4.350 H21 TNK 48 TNK H22 H22 H 0 1 N N N -9.665 -37.677 23.868 0.728 -1.827 -6.441 H22 TNK 49 TNK H23 H23 H 0 1 N N N -9.871 -35.936 25.651 0.102 0.547 -6.611 H23 TNK 50 TNK H24 H24 H 0 1 N N N -8.143 -34.145 25.841 -0.936 1.687 -4.692 H24 TNK 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TNK C1 C2 DOUB Y N 1 TNK C1 C6 SING Y N 2 TNK C1 C13 SING N N 3 TNK C2 C3 SING Y N 4 TNK C2 H2 SING N N 5 TNK C3 C4 DOUB Y N 6 TNK C3 H3 SING N N 7 TNK C4 C5 SING Y N 8 TNK C4 H4 SING N N 9 TNK C5 C6 DOUB Y N 10 TNK C5 H5 SING N N 11 TNK C6 H6 SING N N 12 TNK C7 N8 SING N N 13 TNK C7 C12 DOUB N N 14 TNK C7 C13 SING N N 15 TNK N8 C9 SING N N 16 TNK N8 C17 SING N N 17 TNK C9 O9 DOUB N N 18 TNK C9 N10 SING N N 19 TNK N10 C11 SING N N 20 TNK N10 HN1 SING N N 21 TNK C11 O11 DOUB N N 22 TNK C11 C12 SING N N 23 TNK C12 C14 SING N N 24 TNK C13 H131 SING N N 25 TNK C13 H132 SING N N 26 TNK C14 C15 SING N N 27 TNK C14 C16 SING N N 28 TNK C14 H14 SING N N 29 TNK C15 H151 SING N N 30 TNK C15 H152 SING N N 31 TNK C15 H153 SING N N 32 TNK C16 H161 SING N N 33 TNK C16 H162 SING N N 34 TNK C16 H163 SING N N 35 TNK C17 O17 SING N N 36 TNK C17 H171 SING N N 37 TNK C17 H172 SING N N 38 TNK O17 C18 SING N N 39 TNK C18 C19 SING N N 40 TNK C18 H181 SING N N 41 TNK C18 H182 SING N N 42 TNK C19 C20 DOUB Y N 43 TNK C19 C24 SING Y N 44 TNK C20 C21 SING Y N 45 TNK C20 H20 SING N N 46 TNK C21 C22 DOUB Y N 47 TNK C21 H21 SING N N 48 TNK C22 C23 SING Y N 49 TNK C22 H22 SING N N 50 TNK C23 C24 DOUB Y N 51 TNK C23 H23 SING N N 52 TNK C24 H24 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TNK SMILES ACDLabs 10.04 "O=C1C(=C(N(C(=O)N1)COCc2ccccc2)Cc3ccccc3)C(C)C" TNK SMILES_CANONICAL CACTVS 3.341 "CC(C)C1=C(Cc2ccccc2)N(COCc3ccccc3)C(=O)NC1=O" TNK SMILES CACTVS 3.341 "CC(C)C1=C(Cc2ccccc2)N(COCc3ccccc3)C(=O)NC1=O" TNK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C1=C(N(C(=O)NC1=O)COCc2ccccc2)Cc3ccccc3" TNK SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)C1=C(N(C(=O)NC1=O)COCc2ccccc2)Cc3ccccc3" TNK InChI InChI 1.03 "InChI=1S/C22H24N2O3/c1-16(2)20-19(13-17-9-5-3-6-10-17)24(22(26)23-21(20)25)15-27-14-18-11-7-4-8-12-18/h3-12,16H,13-15H2,1-2H3,(H,23,25,26)" TNK InChIKey InChI 1.03 KSAAUHMSLCPIEX-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TNK "SYSTEMATIC NAME" ACDLabs 10.04 "6-benzyl-1-[(benzyloxy)methyl]-5-(1-methylethyl)pyrimidine-2,4(1H,3H)-dione" TNK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-(phenylmethoxymethyl)-6-(phenylmethyl)-5-propan-2-yl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TNK "Create component" 1999-07-08 EBI TNK "Modify descriptor" 2011-06-04 RCSB #