data_TNR # _chem_comp.id TNR _chem_comp.name "O-(2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSYL)-L-SERINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H20 N2 O8" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-11-15 _chem_comp.pdbx_modified_date 2020-07-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.285 _chem_comp.one_letter_code S _chem_comp.three_letter_code TNR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1N47 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TNR OXT OB O 0 1 N Y N -29.699 58.395 -34.274 -0.172 0.174 4.855 OXT TNR 1 TNR C C C 0 1 N N N -30.886 58.706 -34.288 0.944 0.103 4.113 C TNR 2 TNR O OA O 0 1 N N N -31.212 59.836 -33.943 1.918 -0.470 4.541 O TNR 3 TNR CA CA C 0 1 N N S -31.950 57.696 -34.757 0.983 0.739 2.747 CA TNR 4 TNR N N N 0 1 N N N -31.365 56.641 -35.585 2.354 1.171 2.448 N TNR 5 TNR CB CB C 0 1 N N N -32.698 57.075 -33.570 0.528 -0.277 1.699 CB TNR 6 TNR O1 O1 O 0 1 N N N -31.815 56.773 -32.498 0.565 0.325 0.403 O1 TNR 7 TNR C1 C1 C 0 1 N N S -32.295 56.885 -31.156 0.132 -0.669 -0.526 C1 TNR 8 TNR C2 C2 C 0 1 N N R -31.124 57.227 -30.251 0.156 -0.081 -1.939 C2 TNR 9 TNR N2 N2 N 0 1 N N N -30.597 58.478 -30.723 1.523 0.317 -2.281 N2 TNR 10 TNR C7 C7 C 0 1 N N N -30.360 59.458 -29.869 2.352 -0.560 -2.880 C7 TNR 11 TNR C8 C8 C 0 1 N N N -29.849 60.748 -30.450 3.759 -0.149 -3.231 C8 TNR 12 TNR O7 O7 O 0 1 N N N -30.553 59.297 -28.681 1.966 -1.681 -3.136 O7 TNR 13 TNR C3 C3 C 0 1 N N R -30.094 56.131 -30.327 -0.763 1.143 -1.989 C3 TNR 14 TNR O3 O3 O 0 1 N N N -29.041 56.449 -29.426 -0.866 1.611 -3.335 O3 TNR 15 TNR C4 C4 C 0 1 N N R -30.752 54.857 -29.858 -2.149 0.737 -1.474 C4 TNR 16 TNR O4 O4 O 0 1 N N N -31.141 55.062 -28.502 -2.741 -0.195 -2.380 O4 TNR 17 TNR C5 C5 C 0 1 N N R -31.997 54.555 -30.681 -1.999 0.090 -0.095 C5 TNR 18 TNR O5 O5 O 0 1 N N N -32.906 55.664 -30.758 -1.192 -1.081 -0.197 O5 TNR 19 TNR C6 C6 C 0 1 N N N -32.735 53.396 -30.038 -3.380 -0.289 0.440 C6 TNR 20 TNR O6 O6 O 0 1 N N N -33.536 52.763 -31.038 -3.242 -0.893 1.728 O6 TNR 21 TNR HB HB H 0 1 N N N -29.446 57.519 -34.541 -0.197 -0.233 5.731 HB TNR 22 TNR HCA HCA H 0 1 N N N -32.680 58.265 -35.377 0.318 1.602 2.729 HCA TNR 23 TNR H 1HN H 0 1 N N N -32.069 55.972 -35.895 2.932 0.344 2.475 H TNR 24 TNR H2 2HN H 0 1 N Y N -30.595 56.174 -35.104 2.355 1.493 1.491 H2 TNR 25 TNR HB2 1HCB H 0 1 N N N -33.540 57.723 -33.234 -0.489 -0.598 1.921 HB2 TNR 26 TNR HB3 2HCB H 0 1 N N N -33.283 56.178 -33.880 1.193 -1.140 1.717 HB3 TNR 27 TNR HC1 HC1 H 0 1 N N N -33.061 57.691 -31.084 0.801 -1.527 -0.477 HC1 TNR 28 TNR HC2 HC2 H 0 1 N N N -31.430 57.317 -29.182 -0.193 -0.829 -2.651 HC2 TNR 29 TNR HN2 HN2 H 0 1 N N N -30.383 58.677 -31.700 1.832 1.214 -2.076 HN2 TNR 30 TNR HC81 1HC8 H 0 0 N N N -29.649 61.575 -29.729 4.274 -0.985 -3.705 HC81 TNR 31 TNR HC82 2HC8 H 0 0 N N N -28.934 60.549 -31.055 3.729 0.695 -3.919 HC82 TNR 32 TNR HC83 3HC8 H 0 0 N N N -30.546 61.103 -31.244 4.291 0.138 -2.324 HC83 TNR 33 TNR HC3 HC3 H 0 1 N N N -29.698 56.019 -31.363 -0.355 1.932 -1.357 HC3 TNR 34 TNR HO3 HO3 H 0 1 N N N -28.391 55.757 -29.473 -1.452 2.380 -3.319 HO3 TNR 35 TNR HC4 HC4 H 0 1 N N N -30.044 54.002 -29.966 -2.782 1.621 -1.395 HC4 TNR 36 TNR HO4 HO4 H 0 1 N N N -31.555 54.259 -28.206 -3.609 -0.423 -2.019 HO4 TNR 37 TNR HC5 HC5 H 0 1 N N N -31.654 54.320 -31.715 -1.527 0.797 0.586 HC5 TNR 38 TNR HC61 1HC6 H 0 0 N N N -32.049 52.683 -29.523 -3.996 0.606 0.524 HC61 TNR 39 TNR HC62 2HC6 H 0 0 N N N -33.328 53.706 -29.146 -3.854 -0.993 -0.242 HC62 TNR 40 TNR HO6 HO6 H 0 1 N N N -33.998 52.037 -30.635 -4.133 -1.116 2.029 HO6 TNR 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TNR OXT C SING N N 1 TNR OXT HB SING N N 2 TNR C O DOUB N N 3 TNR C CA SING N N 4 TNR CA N SING N N 5 TNR CA CB SING N N 6 TNR CA HCA SING N N 7 TNR N H SING N N 8 TNR N H2 SING N N 9 TNR CB O1 SING N N 10 TNR CB HB2 SING N N 11 TNR CB HB3 SING N N 12 TNR O1 C1 SING N N 13 TNR C1 C2 SING N N 14 TNR C1 O5 SING N N 15 TNR C1 HC1 SING N N 16 TNR C2 N2 SING N N 17 TNR C2 C3 SING N N 18 TNR C2 HC2 SING N N 19 TNR N2 C7 SING N N 20 TNR N2 HN2 SING N N 21 TNR C7 C8 SING N N 22 TNR C7 O7 DOUB N N 23 TNR C8 HC81 SING N N 24 TNR C8 HC82 SING N N 25 TNR C8 HC83 SING N N 26 TNR C3 O3 SING N N 27 TNR C3 C4 SING N N 28 TNR C3 HC3 SING N N 29 TNR O3 HO3 SING N N 30 TNR C4 O4 SING N N 31 TNR C4 C5 SING N N 32 TNR C4 HC4 SING N N 33 TNR O4 HO4 SING N N 34 TNR C5 O5 SING N N 35 TNR C5 C6 SING N N 36 TNR C5 HC5 SING N N 37 TNR C6 O6 SING N N 38 TNR C6 HC61 SING N N 39 TNR C6 HC62 SING N N 40 TNR O6 HO6 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TNR SMILES ACDLabs 10.04 "O=C(O)C(N)COC1OC(C(O)C(O)C1NC(=O)C)CO" TNR SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@@H]1OC[C@H](N)C(O)=O" TNR SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OC[CH](N)C(O)=O" TNR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1OC[C@@H](C(=O)O)N)CO)O)O" TNR SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1OCC(C(=O)O)N)CO)O)O" TNR InChI InChI 1.03 "InChI=1S/C11H20N2O8/c1-4(15)13-7-9(17)8(16)6(2-14)21-11(7)20-3-5(12)10(18)19/h5-9,11,14,16-17H,2-3,12H2,1H3,(H,13,15)(H,18,19)/t5-,6+,7+,8-,9+,11-/m0/s1" TNR InChIKey InChI 1.03 REDMNGDGDYFZRE-WKWISIMFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TNR "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-3-{[(2S,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl]oxy}-2-aminopropanoic acid (non-preferred name)" TNR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-3-[(2S,3R,4R,5R,6R)-3-acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-2-amino-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TNR "Create component" 2002-11-15 EBI TNR "Modify descriptor" 2011-06-04 RCSB TNR "Obsolete component" 2020-07-03 RCSB ##