data_TNX # _chem_comp.id TNX _chem_comp.name "1,5-anhydro-2-deoxy-2-(ethanethioylamino)-D-arabino-hex-1-enitol" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H13 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-[(2R,3S,4R)-2-(hydroxymethyl)-3,4-bis(oxidanyl)-3,4-dihydro-2H-pyran-5-yl]ethanethioamide; N-thioacetyl-D-glucal; NTA-glucal ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-12-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 219.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TNX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5FCZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TNX C1 C1 C 0 1 N N N -5.793 66.632 10.283 -0.259 1.411 0.860 C1 TNX 1 TNX S7 S7 S 0 1 N N N -5.384 64.184 9.001 2.366 0.123 -1.592 S7 TNX 2 TNX C2 C2 C 0 1 N N N -6.147 66.735 9.020 0.568 0.405 0.689 C2 TNX 3 TNX C3 C3 C 0 1 N N R -5.298 67.575 8.057 0.112 -0.937 0.185 C3 TNX 4 TNX C4 C4 C 0 1 N N S -4.055 68.030 8.860 -1.408 -1.052 0.344 C4 TNX 5 TNX C5 C5 C 0 1 N N R -3.513 66.854 9.703 -2.045 0.237 -0.192 C5 TNX 6 TNX C6 C6 C 0 1 N N N -2.379 67.351 10.587 -3.569 0.135 -0.103 C6 TNX 7 TNX C7 C7 C 0 1 N N N -6.804 64.654 8.264 2.851 0.427 0.022 C7 TNX 8 TNX C8 C8 C 0 1 N N N -7.558 63.720 7.341 4.315 0.513 0.365 C8 TNX 9 TNX N2 N2 N 0 1 N N N -7.191 65.904 8.490 1.922 0.589 0.985 N2 TNX 10 TNX O3 O3 O 0 1 N N N -6.054 68.628 7.537 0.749 -1.970 0.939 O3 TNX 11 TNX O4 O4 O 0 1 N N N -3.093 68.471 7.957 -1.887 -2.173 -0.402 O4 TNX 12 TNX O5 O5 O 0 1 N N N -4.507 66.284 10.576 -1.588 1.330 0.609 O5 TNX 13 TNX O6 O6 O 0 1 N N N -1.566 66.267 10.947 -4.160 1.286 -0.709 O6 TNX 14 TNX H1 H1 H 0 1 N N N -6.506 66.819 11.072 0.139 2.347 1.223 H1 TNX 15 TNX H3 H3 H 0 1 N N N -4.955 66.920 7.243 0.376 -1.039 -0.867 H3 TNX 16 TNX H4 H4 H 0 1 N N N -4.354 68.842 9.540 -1.659 -1.177 1.397 H4 TNX 17 TNX H5 H5 H 0 1 N N N -3.123 66.083 9.022 -1.747 0.391 -1.229 H5 TNX 18 TNX H62 H62 H 0 1 N N N -1.781 68.092 10.036 -3.904 -0.762 -0.624 H62 TNX 19 TNX H61 H61 H 0 1 N N N -2.795 67.815 11.493 -3.870 0.080 0.943 H61 TNX 20 TNX H83 H83 H 0 1 N N N -7.021 62.762 7.269 4.685 -0.477 0.633 H83 TNX 21 TNX H81 H81 H 0 1 N N N -8.568 63.545 7.741 4.869 0.886 -0.496 H81 TNX 22 TNX H82 H82 H 0 1 N N N -7.633 64.174 6.342 4.452 1.192 1.207 H82 TNX 23 TNX H2 H2 H 0 1 N N N -8.118 66.234 8.309 2.193 0.833 1.884 H2 TNX 24 TNX HO3 HO3 H 0 1 N N N -6.797 68.279 7.059 1.715 -1.959 0.884 HO3 TNX 25 TNX HO4 HO4 H 0 1 N N N -2.320 68.755 8.431 -1.509 -3.019 -0.127 HO4 TNX 26 TNX HO6 HO6 H 0 1 N N N -0.856 66.573 11.499 -5.127 1.289 -0.689 HO6 TNX 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TNX C8 C7 SING N N 1 TNX O3 C3 SING N N 2 TNX O4 C4 SING N N 3 TNX C3 C4 SING N N 4 TNX C3 C2 SING N N 5 TNX C7 N2 SING N N 6 TNX C7 S7 DOUB N N 7 TNX N2 C2 SING N N 8 TNX C4 C5 SING N N 9 TNX C2 C1 DOUB N N 10 TNX C5 O5 SING N N 11 TNX C5 C6 SING N N 12 TNX C1 O5 SING N N 13 TNX C6 O6 SING N N 14 TNX C1 H1 SING N N 15 TNX C3 H3 SING N N 16 TNX C4 H4 SING N N 17 TNX C5 H5 SING N N 18 TNX C6 H62 SING N N 19 TNX C6 H61 SING N N 20 TNX C8 H83 SING N N 21 TNX C8 H81 SING N N 22 TNX C8 H82 SING N N 23 TNX N2 H2 SING N N 24 TNX O3 HO3 SING N N 25 TNX O4 HO4 SING N N 26 TNX O6 HO6 SING N N 27 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TNX SMILES ACDLabs 12.01 "C=1OC(C(C(C=1NC(=S)C)O)O)CO" TNX InChI InChI 1.03 "InChI=1S/C8H13NO4S/c1-4(14)9-5-3-13-6(2-10)8(12)7(5)11/h3,6-8,10-12H,2H2,1H3,(H,9,14)/t6-,7-,8-/m1/s1" TNX InChIKey InChI 1.03 VWPHMQQBRGEPGS-BWZBUEFSSA-N TNX SMILES_CANONICAL CACTVS 3.385 "CC(=S)NC1=CO[C@H](CO)[C@@H](O)[C@@H]1O" TNX SMILES CACTVS 3.385 "CC(=S)NC1=CO[CH](CO)[CH](O)[CH]1O" TNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=S)NC1=CO[C@@H]([C@H]([C@@H]1O)O)CO" TNX SMILES "OpenEye OEToolkits" 2.0.7 "CC(=S)NC1=COC(C(C1O)O)CO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TNX "SYSTEMATIC NAME" ACDLabs 12.01 "1,5-anhydro-2-deoxy-2-(ethanethioylamino)-D-arabino-hex-1-enitol" TNX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)-3,4-dihydro-2~{H}-pyran-5-yl]ethanethioamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TNX "Create component" 2015-12-18 RCSB TNX "Initial release" 2016-10-26 RCSB TNX "Other modification" 2020-04-11 RCSB TNX "Modify synonyms" 2020-06-29 PDBE TNX "Other modification" 2020-07-03 RCSB TNX "Modify synonyms" 2020-07-17 RCSB TNX "Modify component atom id" 2020-07-17 RCSB # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TNX "CARBOHYDRATE ISOMER" D PDB ? TNX "CARBOHYDRATE RING" dihydropyran PDB ? TNX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TNX "N-[(2R,3S,4R)-2-(hydroxymethyl)-3,4-bis(oxidanyl)-3,4-dihydro-2H-pyran-5-yl]ethanethioamide" PDB ? 2 TNX N-thioacetyl-D-glucal PDB ? 3 TNX NTA-glucal PDB ? ##