data_TP6
#
_chem_comp.id TP6
_chem_comp.name "3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL) 1-PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H25 N4 O11 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-12-09
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 468.353
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TP6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2C92
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TP6 O2P O2P O 0 1 N N N -18.191 3.962 -1.250 -8.689 0.192 -0.884 O2P TP6 1
TP6 P P P 0 1 N N N -18.437 3.990 0.253 -8.310 -0.994 0.137 P TP6 2
TP6 O3P O3P O 0 1 N N N -17.151 3.958 1.051 -9.472 -1.142 1.242 O3P TP6 3
TP6 O1P O1P O 0 1 N N N -19.377 5.055 0.734 -8.174 -2.264 -0.610 O1P TP6 4
TP6 O27 O27 O 0 1 N N N -19.189 2.588 0.480 -6.917 -0.648 0.866 O27 TP6 5
TP6 C19 C19 C 0 1 N N N -19.367 2.128 1.846 -5.910 -0.646 -0.147 C19 TP6 6
TP6 C18 C18 C 0 1 N N N -19.362 0.818 2.064 -4.553 -0.323 0.483 C18 TP6 7
TP6 C17 C17 C 0 1 N N N -19.497 0.365 3.442 -3.475 -0.321 -0.602 C17 TP6 8
TP6 C16 C16 C 0 1 N N N -20.669 0.297 4.064 -2.118 0.002 0.028 C16 TP6 9
TP6 C15 C15 C 0 1 N N N -21.978 0.607 3.390 -1.039 0.005 -1.057 C15 TP6 10
TP6 N5 N5 N 0 1 Y N N -22.956 0.333 4.439 0.259 0.314 -0.454 N5 TP6 11
TP6 C9 C9 C 0 1 Y N N -23.391 -0.841 4.917 0.811 1.589 -0.291 C9 TP6 12
TP6 C4 C4 C 0 1 Y N N -23.086 -2.239 4.568 0.368 2.888 -0.610 C4 TP6 13
TP6 O2 O2 O 0 1 N N N -22.287 -2.526 3.662 -0.711 3.054 -1.152 O2 TP6 14
TP6 N3 N3 N 0 1 Y N N -23.727 -3.206 5.266 1.155 3.944 -0.318 N3 TP6 15
TP6 C6 C6 C 0 1 Y N N -23.604 1.212 5.189 1.139 -0.579 0.044 C6 TP6 16
TP6 O4 O4 O 0 1 N N N -23.479 2.478 5.061 0.984 -1.786 0.068 O4 TP6 17
TP6 N7 N7 N 0 1 Y N N -24.415 0.722 6.122 2.215 0.083 0.512 N7 TP6 18
TP6 C8 C8 C 0 1 Y N N -24.354 -0.595 6.000 2.026 1.427 0.318 C8 TP6 19
TP6 N1 N1 N 0 1 Y N N -24.927 -1.656 6.615 2.791 2.536 0.600 N1 TP6 20
TP6 C2 C2 C 0 1 Y N N -24.607 -2.916 6.265 2.346 3.766 0.280 C2 TP6 21
TP6 O1 O1 O 0 1 N N N -25.158 -3.850 6.858 3.035 4.734 0.537 O1 TP6 22
TP6 C10 C10 C 0 1 N N N -25.213 1.569 6.986 3.391 -0.533 1.131 C10 TP6 23
TP6 C11 C11 C 0 1 N N R -25.667 0.965 8.291 4.428 -0.852 0.053 C11 TP6 24
TP6 O19 O19 O 0 1 N N N -24.862 -0.070 8.906 4.900 0.365 -0.529 O19 TP6 25
TP6 C12 C12 C 0 1 N N S -26.312 1.945 9.251 5.601 -1.606 0.680 C12 TP6 26
TP6 O21 O21 O 0 1 N N N -27.632 1.547 8.928 6.128 -0.846 1.770 O21 TP6 27
TP6 C13 C13 C 0 1 N N R -26.158 3.450 9.013 6.694 -1.816 -0.370 C13 TP6 28
TP6 O23 O23 O 0 1 N N N -24.815 3.868 9.306 6.167 -2.576 -1.460 O23 TP6 29
TP6 C14 C14 C 0 1 N N N -27.085 4.217 9.959 7.867 -2.570 0.257 C14 TP6 30
TP6 O26 O26 O 0 1 N N N -26.807 3.826 11.315 8.934 -2.664 -0.689 O26 TP6 31
TP6 H2P H2P H 0 1 N N N -19.024 3.956 -1.708 -8.768 0.999 -0.359 H2P TP6 32
TP6 H3P H3P H 0 1 N N N -16.409 3.951 0.457 -10.287 -1.348 0.764 H3P TP6 33
TP6 H191 1H19 H 0 0 N N N -20.379 2.456 2.125 -6.150 0.107 -0.897 H191 TP6 34
TP6 H192 2H19 H 0 0 N N N -18.539 2.551 2.434 -5.867 -1.628 -0.619 H192 TP6 35
TP6 H181 1H18 H 0 0 N N N -18.363 0.480 1.749 -4.312 -1.076 1.233 H181 TP6 36
TP6 H182 2H18 H 0 0 N N N -20.211 0.398 1.505 -4.596 0.659 0.955 H182 TP6 37
TP6 H171 1H17 H 0 0 N N N -18.985 1.163 4.000 -3.715 0.432 -1.352 H171 TP6 38
TP6 H172 2H17 H 0 0 N N N -19.105 -0.663 3.449 -3.431 -1.303 -1.074 H172 TP6 39
TP6 H161 1H16 H 0 0 N N N -20.588 1.118 4.792 -1.877 -0.751 0.778 H161 TP6 40
TP6 H162 2H16 H 0 0 N N N -20.758 -0.748 4.397 -2.161 0.984 0.499 H162 TP6 41
TP6 H151 1H15 H 0 0 N N N -22.145 0.016 2.478 -1.280 0.758 -1.808 H151 TP6 42
TP6 H152 2H15 H 0 0 N N N -22.025 1.653 3.052 -0.996 -0.977 -1.529 H152 TP6 43
TP6 H3 H3 H 0 1 N N N -23.549 -4.164 5.041 0.856 4.841 -0.538 H3 TP6 44
TP6 H1 H1 H 0 1 N N N -25.598 -1.502 7.340 3.653 2.431 1.031 H1 TP6 45
TP6 H101 1H10 H 0 0 N N N -26.134 1.779 6.423 3.096 -1.453 1.636 H101 TP6 46
TP6 H102 2H10 H 0 0 N N N -24.602 2.450 7.231 3.822 0.157 1.857 H102 TP6 47
TP6 H11 H11 H 0 1 N N N -26.489 0.332 7.924 3.970 -1.470 -0.720 H11 TP6 48
TP6 HA HA H 0 1 N N N -24.686 -0.754 8.271 5.296 0.881 0.186 HA TP6 49
TP6 H12 H12 H 0 1 N N N -25.904 1.890 10.271 5.258 -2.574 1.045 H12 TP6 50
TP6 H21 H21 H 0 1 N N N -28.140 1.458 9.726 6.420 0.000 1.405 H21 TP6 51
TP6 H13 H13 H 0 1 N N N -26.404 3.655 7.961 7.037 -0.848 -0.735 H13 TP6 52
TP6 H23 H23 H 0 1 N N N -24.328 3.960 8.496 5.875 -3.422 -1.095 H23 TP6 53
TP6 H141 1H14 H 0 0 N N N -28.133 3.987 9.716 7.545 -3.572 0.542 H141 TP6 54
TP6 H142 2H14 H 0 0 N N N -26.915 5.298 9.845 8.212 -2.034 1.142 H142 TP6 55
TP6 H26 H26 H 0 1 N N N -26.746 2.879 11.366 9.652 -3.145 -0.254 H26 TP6 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TP6 O2P P SING N N 1
TP6 O2P H2P SING N N 2
TP6 P O3P SING N N 3
TP6 P O1P DOUB N N 4
TP6 P O27 SING N N 5
TP6 O3P H3P SING N N 6
TP6 O27 C19 SING N N 7
TP6 C19 C18 SING N N 8
TP6 C19 H191 SING N N 9
TP6 C19 H192 SING N N 10
TP6 C18 C17 SING N N 11
TP6 C18 H181 SING N N 12
TP6 C18 H182 SING N N 13
TP6 C17 C16 SING N N 14
TP6 C17 H171 SING N N 15
TP6 C17 H172 SING N N 16
TP6 C16 C15 SING N N 17
TP6 C16 H161 SING N N 18
TP6 C16 H162 SING N N 19
TP6 C15 N5 SING N N 20
TP6 C15 H151 SING N N 21
TP6 C15 H152 SING N N 22
TP6 N5 C9 SING Y N 23
TP6 N5 C6 SING Y N 24
TP6 C9 C4 SING Y N 25
TP6 C9 C8 DOUB Y N 26
TP6 C4 O2 DOUB N N 27
TP6 C4 N3 SING Y N 28
TP6 N3 C2 SING Y N 29
TP6 N3 H3 SING N N 30
TP6 C6 O4 DOUB N N 31
TP6 C6 N7 SING Y N 32
TP6 N7 C8 SING Y N 33
TP6 N7 C10 SING N N 34
TP6 C8 N1 SING Y N 35
TP6 N1 C2 SING Y N 36
TP6 N1 H1 SING N N 37
TP6 C2 O1 DOUB N N 38
TP6 C10 C11 SING N N 39
TP6 C10 H101 SING N N 40
TP6 C10 H102 SING N N 41
TP6 C11 O19 SING N N 42
TP6 C11 C12 SING N N 43
TP6 C11 H11 SING N N 44
TP6 O19 HA SING N N 45
TP6 C12 O21 SING N N 46
TP6 C12 C13 SING N N 47
TP6 C12 H12 SING N N 48
TP6 O21 H21 SING N N 49
TP6 C13 O23 SING N N 50
TP6 C13 C14 SING N N 51
TP6 C13 H13 SING N N 52
TP6 O23 H23 SING N N 53
TP6 C14 O26 SING N N 54
TP6 C14 H141 SING N N 55
TP6 C14 H142 SING N N 56
TP6 O26 H26 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TP6 SMILES ACDLabs 10.04 "O=C1C2=C(NC(=O)N1)N(C(=O)N2CCCCCOP(=O)(O)O)CC(O)C(O)C(O)CO"
TP6 SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@@H](O)[C@H](O)CN1C(=O)N(CCCCCO[P](O)(O)=O)C2=C1NC(=O)NC2=O"
TP6 SMILES CACTVS 3.341 "OC[CH](O)[CH](O)[CH](O)CN1C(=O)N(CCCCCO[P](O)(O)=O)C2=C1NC(=O)NC2=O"
TP6 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCN1C2=C(NC(=O)NC2=O)N(C1=O)C[C@H]([C@@H]([C@@H](CO)O)O)O)CCOP(=O)(O)O"
TP6 SMILES "OpenEye OEToolkits" 1.5.0 "C(CCN1C2=C(NC(=O)NC2=O)N(C1=O)CC(C(C(CO)O)O)O)CCOP(=O)(O)O"
TP6 InChI InChI 1.03 "InChI=1S/C15H25N4O11P/c20-7-9(22)11(23)8(21)6-19-12-10(13(24)17-14(25)16-12)18(15(19)26)4-2-1-3-5-30-31(27,28)29/h8-9,11,20-23H,1-7H2,(H2,27,28,29)(H2,16,17,24,25)/t8-,9-,11+/m1/s1"
TP6 InChIKey InChI 1.03 LVMWQWUPWMYMKX-KKZNHRDASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TP6 "SYSTEMATIC NAME" ACDLabs 10.04 "1-deoxy-1-{2,6,8-trioxo-7-[5-(phosphonooxy)pentyl]-1,2,3,6,7,8-hexahydro-9H-purin-9-yl}-D-arabinitol"
TP6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[2,6,8-trioxo-9-[(2R,3S,4R)-2,3,4,5-tetrahydroxypentyl]-3H-purin-7-yl]pentyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TP6 "Create component" 2005-12-09 EBI
TP6 "Modify descriptor" 2011-06-04 RCSB
#