data_TPK # _chem_comp.id TPK _chem_comp.name "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H13 N O2" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-03-15 _chem_comp.pdbx_modified_date 2019-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.173 _chem_comp.one_letter_code P _chem_comp.three_letter_code TPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4AMY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TPK C C C 0 1 N N R 36.817 39.066 82.068 0.962 -0.469 0.278 C TPK 1 TPK O O O 0 1 N N N 35.899 37.978 81.963 0.937 -1.052 -1.027 O TPK 2 TPK C3 C3 C 0 1 N N N 36.573 39.557 83.505 1.975 0.678 0.304 C3 TPK 3 TPK O4 O4 O 0 1 N N N 37.185 40.816 83.749 3.289 0.158 0.097 O4 TPK 4 TPK CA CA C 0 1 N N S 38.252 38.621 81.688 -0.428 0.069 0.623 CA TPK 5 TPK CB CB C 0 1 N N N 38.255 37.825 80.377 -1.467 -1.072 0.602 CB TPK 6 TPK CG CG C 0 1 N N N 38.295 36.352 80.704 -2.744 -0.440 0.012 CG TPK 7 TPK CD CD C 0 1 N N N 38.563 36.248 82.209 -2.369 1.030 -0.275 CD TPK 8 TPK N N N 0 1 N N N 38.754 37.637 82.655 -0.891 1.016 -0.423 N TPK 9 TPK H1 H1 H 0 1 N N N 36.517 39.868 81.378 1.251 -1.225 1.008 H1 TPK 10 TPK HO HO H 0 1 N N N 35.964 37.591 81.098 0.687 -0.435 -1.729 HO TPK 11 TPK H3 H3 H 0 1 N N N 35.489 39.651 83.669 1.737 1.390 -0.486 H3 TPK 12 TPK H3A H3A H 0 1 N N N 36.987 38.819 84.208 1.931 1.179 1.271 H3A TPK 13 TPK HO4 HO4 H 0 1 N N N 37.012 41.084 84.644 3.984 0.831 0.101 HO4 TPK 14 TPK HA HA H 0 1 N N N 38.918 39.493 81.614 -0.415 0.554 1.599 HA TPK 15 TPK HB2 HB2 H 0 1 N N N 37.344 38.052 79.804 -1.121 -1.888 -0.032 HB2 TPK 16 TPK HB3 HB3 H 0 1 N N N 39.139 38.096 79.782 -1.656 -1.431 1.614 HB3 TPK 17 TPK HG2 HG2 H 0 1 N N N 37.332 35.881 80.456 -3.025 -0.946 -0.912 HG2 TPK 18 TPK HG3 HG3 H 0 1 N N N 39.100 35.859 80.140 -3.560 -0.489 0.734 HG3 TPK 19 TPK HD2 HD2 H 0 1 N N N 37.706 35.790 82.724 -2.841 1.370 -1.197 HD2 TPK 20 TPK HD3 HD3 H 0 1 N N N 39.467 35.652 82.401 -2.661 1.667 0.560 HD3 TPK 21 TPK H H H 0 1 N Y N 39.731 37.796 82.794 -0.504 1.936 -0.275 H TPK 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TPK C O SING N N 1 TPK C C3 SING N N 2 TPK C CA SING N N 3 TPK C3 O4 SING N N 4 TPK CA CB SING N N 5 TPK CA N SING N N 6 TPK CB CG SING N N 7 TPK CG CD SING N N 8 TPK CD N SING N N 9 TPK C H1 SING N N 10 TPK O HO SING N N 11 TPK C3 H3 SING N N 12 TPK C3 H3A SING N N 13 TPK O4 HO4 SING N N 14 TPK CA HA SING N N 15 TPK CB HB2 SING N N 16 TPK CB HB3 SING N N 17 TPK CG HG2 SING N N 18 TPK CG HG3 SING N N 19 TPK CD HD2 SING N N 20 TPK CD HD3 SING N N 21 TPK N H SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TPK SMILES ACDLabs 12.01 "C(O)(CO)C1CCCN1" TPK InChI InChI 1.03 "InChI=1S/C6H13NO2/c8-4-6(9)5-2-1-3-7-5/h5-9H,1-4H2/t5-,6-/m0/s1" TPK InChIKey InChI 1.03 ABWTVUOTCCJBBM-WDSKDSINSA-N TPK SMILES_CANONICAL CACTVS 3.385 "OC[C@H](O)[C@@H]1CCCN1" TPK SMILES CACTVS 3.385 "OC[CH](O)[CH]1CCCN1" TPK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1C[C@H](NC1)[C@H](CO)O" TPK SMILES "OpenEye OEToolkits" 1.7.6 "C1CC(NC1)C(CO)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TPK "SYSTEMATIC NAME" ACDLabs 12.01 "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol" TPK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R)-1-[(2S)-pyrrolidin-2-yl]ethane-1,2-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TPK "Create component" 2012-03-15 EBI TPK "Modify descriptor" 2014-09-05 RCSB TPK "Other modification" 2018-04-17 RCSB TPK "Modify one letter code" 2019-10-07 PDBE ##