data_TPP
#
_chem_comp.id TPP
_chem_comp.name "THIAMINE DIPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H19 N4 O7 P2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 425.314
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TPP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BFD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TPP "N1'" "N1'" N 0 1 Y N N 92.370 46.063 160.813 -6.096 -2.273 -0.022 "N1'" TPP 1
TPP "C2'" "C2'" C 0 1 Y N N 91.754 44.954 160.390 -7.012 -1.612 0.656 "C2'" TPP 2
TPP CM2 CM2 C 0 1 N N N 90.251 45.078 160.110 -8.035 -2.382 1.451 CM2 TPP 3
TPP "N3'" "N3'" N 0 1 Y N N 92.378 43.795 160.173 -7.058 -0.295 0.660 "N3'" TPP 4
TPP "C4'" "C4'" C 0 1 Y N N 93.717 43.798 160.367 -6.172 0.417 -0.030 "C4'" TPP 5
TPP "N4'" "N4'" N 0 1 N N N 94.365 42.682 159.927 -6.223 1.801 -0.024 "N4'" TPP 6
TPP "C5'" "C5'" C 0 1 Y N N 94.445 44.916 160.823 -5.188 -0.254 -0.760 "C5'" TPP 7
TPP "C6'" "C6'" C 0 1 Y N N 93.682 46.063 161.043 -5.178 -1.634 -0.733 "C6'" TPP 8
TPP "C7'" "C7'" C 0 1 N N N 95.959 44.874 160.992 -4.162 0.511 -1.557 "C7'" TPP 9
TPP N3 N3 N 1 1 Y N N 96.446 43.936 162.026 -3.086 0.956 -0.668 N3 TPP 10
TPP C2 C2 C 0 1 Y N N 96.862 42.647 161.736 -3.122 2.112 -0.095 C2 TPP 11
TPP S1 S1 S 0 1 Y N N 97.313 41.796 163.217 -1.730 2.334 0.873 S1 TPP 12
TPP C5 C5 C 0 1 Y N N 96.929 43.209 164.160 -1.143 0.738 0.410 C5 TPP 13
TPP C4 C4 C 0 1 Y N N 96.473 44.283 163.455 -2.043 0.192 -0.414 C4 TPP 14
TPP CM4 CM4 C 0 1 N N N 95.893 45.597 163.999 -1.875 -1.182 -1.009 CM4 TPP 15
TPP C6 C6 C 0 1 N N N 97.245 43.057 165.632 0.142 0.099 0.869 C6 TPP 16
TPP C7 C7 C 0 1 N N N 96.139 42.334 166.434 1.267 0.463 -0.102 C7 TPP 17
TPP O7 O7 O 0 1 N N N 96.442 42.565 167.810 2.486 -0.144 0.332 O7 TPP 18
TPP PA PA P 0 1 N N S 96.055 41.545 168.883 3.880 0.027 -0.455 PA TPP 19
TPP O1A O1A O 0 1 N N N 94.662 41.016 168.615 4.181 1.467 -0.617 O1A TPP 20
TPP O2A O2A O 0 1 N N N 96.102 42.250 170.209 3.765 -0.663 -1.905 O2A TPP 21
TPP O3A O3A O 0 1 N N N 97.016 40.352 168.895 5.060 -0.677 0.383 O3A TPP 22
TPP PB PB P 0 1 N N N 98.579 40.181 168.929 6.664 -0.536 0.392 PB TPP 23
TPP O1B O1B O 0 1 N N N 99.045 41.074 170.081 7.154 -0.393 -0.997 O1B TPP 24
TPP O2B O2B O 0 1 N N N 98.684 38.699 169.253 7.083 0.763 1.246 O2B TPP 25
TPP O3B O3B O 0 1 N N N 99.213 40.561 167.641 7.314 -1.849 1.059 O3B TPP 26
TPP HM21 HM21 H 0 0 N N N 89.701 45.108 161.062 -7.660 -2.548 2.461 HM21 TPP 27
TPP HM22 HM22 H 0 0 N N N 90.058 46.003 159.547 -8.964 -1.814 1.496 HM22 TPP 28
TPP HM23 HM23 H 0 0 N N N 89.916 44.212 159.520 -8.220 -3.343 0.970 HM23 TPP 29
TPP HN41 HN41 H 0 0 N N N 94.524 42.755 158.942 -6.909 2.259 0.486 HN41 TPP 30
TPP HN42 HN42 H 0 0 N N N 95.242 42.597 160.400 -5.572 2.313 -0.530 HN42 TPP 31
TPP "H6'" "H6'" H 0 1 N N N 94.161 46.961 161.404 -4.432 -2.186 -1.285 "H6'" TPP 32
TPP "H7'1" "H7'1" H 0 0 N N N 96.394 44.566 160.030 -3.748 -0.136 -2.331 "H7'1" TPP 33
TPP "H7'2" "H7'2" H 0 0 N N N 96.264 45.880 161.317 -4.633 1.377 -2.020 "H7'2" TPP 34
TPP H2 H2 H 0 1 N N N 96.905 42.222 160.744 -3.916 2.835 -0.210 H2 TPP 35
TPP HM41 HM41 H 0 0 N N N 95.754 45.515 165.087 -1.256 -1.117 -1.904 HM41 TPP 36
TPP HM42 HM42 H 0 0 N N N 96.586 46.422 163.779 -1.394 -1.836 -0.282 HM42 TPP 37
TPP HM43 HM43 H 0 0 N N N 94.923 45.795 163.520 -2.852 -1.586 -1.272 HM43 TPP 38
TPP H61 H61 H 0 1 N N N 98.171 42.471 165.724 0.392 0.460 1.866 H61 TPP 39
TPP H62 H62 H 0 1 N N N 97.338 44.070 166.049 0.020 -0.984 0.895 H62 TPP 40
TPP H71 H71 H 0 1 N N N 95.148 42.738 166.181 1.017 0.101 -1.100 H71 TPP 41
TPP H72 H72 H 0 1 N N N 96.110 41.259 166.202 1.389 1.545 -0.128 H72 TPP 42
TPP HOA2 HOA2 H 0 0 N N N 96.112 41.608 170.909 3.568 -1.609 -1.876 HOA2 TPP 43
TPP HOB2 HOB2 H 0 0 N N N 98.706 38.199 168.446 6.793 0.738 2.168 HOB2 TPP 44
TPP HOB3 HOB3 H 0 0 N N N 98.545 40.642 166.970 8.280 -1.833 1.098 HOB3 TPP 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TPP "N1'" "C2'" DOUB Y N 1
TPP "N1'" "C6'" SING Y N 2
TPP "C2'" CM2 SING N N 3
TPP "C2'" "N3'" SING Y N 4
TPP CM2 HM21 SING N N 5
TPP CM2 HM22 SING N N 6
TPP CM2 HM23 SING N N 7
TPP "N3'" "C4'" DOUB Y N 8
TPP "C4'" "N4'" SING N N 9
TPP "C4'" "C5'" SING Y N 10
TPP "N4'" HN41 SING N N 11
TPP "N4'" HN42 SING N N 12
TPP "C5'" "C6'" DOUB Y N 13
TPP "C5'" "C7'" SING N N 14
TPP "C6'" "H6'" SING N N 15
TPP "C7'" N3 SING N N 16
TPP "C7'" "H7'1" SING N N 17
TPP "C7'" "H7'2" SING N N 18
TPP N3 C2 DOUB Y N 19
TPP N3 C4 SING Y N 20
TPP C2 S1 SING Y N 21
TPP C2 H2 SING N N 22
TPP S1 C5 SING Y N 23
TPP C5 C4 DOUB Y N 24
TPP C5 C6 SING N N 25
TPP C4 CM4 SING N N 26
TPP CM4 HM41 SING N N 27
TPP CM4 HM42 SING N N 28
TPP CM4 HM43 SING N N 29
TPP C6 C7 SING N N 30
TPP C6 H61 SING N N 31
TPP C6 H62 SING N N 32
TPP C7 O7 SING N N 33
TPP C7 H71 SING N N 34
TPP C7 H72 SING N N 35
TPP O7 PA SING N N 36
TPP PA O1A DOUB N N 37
TPP PA O2A SING N N 38
TPP PA O3A SING N N 39
TPP O2A HOA2 SING N N 40
TPP O3A PB SING N N 41
TPP PB O1B DOUB N N 42
TPP PB O2B SING N N 43
TPP PB O3B SING N N 44
TPP O2B HOB2 SING N N 45
TPP O3B HOB3 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TPP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCCc1sc[n+](c1C)Cc2c(nc(nc2)C)N"
TPP SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(C[n+]2csc(CCO[P@@](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"
TPP SMILES CACTVS 3.341 "Cc1ncc(C[n+]2csc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1"
TPP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCO[P@](=O)(O)OP(=O)(O)O"
TPP SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCOP(=O)(O)OP(=O)(O)O"
TPP InChI InChI 1.03 "InChI=1S/C12H18N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,7H,3-4,6H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1"
TPP InChIKey InChI 1.03 AYEKOFBPNLCAJY-UHFFFAOYSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TPP "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium"
TPP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TPP "Create component" 1999-07-08 EBI
TPP "Modify descriptor" 2011-06-04 RCSB
#