data_TPU # _chem_comp.id TPU _chem_comp.name "2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N6 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-10-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 408.244 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TPU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WVG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TPU O23 O23 O 0 1 N N N 17.510 18.101 -28.326 7.338 1.760 -0.959 O23 TPU 1 TPU P2 P2 P 0 1 N N N 17.378 16.501 -28.084 6.642 0.410 -0.425 P2 TPU 2 TPU O22 O22 O 0 1 N N N 18.394 15.952 -26.926 6.987 -0.804 -1.425 O22 TPU 3 TPU O21 O21 O 0 1 N N N 17.584 15.736 -29.328 7.152 0.094 0.928 O21 TPU 4 TPU O11 O11 O 0 1 N N N 15.851 16.356 -27.513 5.047 0.617 -0.363 O11 TPU 5 TPU P1 P1 P 0 1 N N N 14.671 15.407 -28.076 3.852 -0.126 0.421 P1 TPU 6 TPU O12 O12 O 0 1 N N N 14.650 15.213 -29.679 3.796 0.405 1.940 O12 TPU 7 TPU O13 O13 O 0 1 N N N 13.435 16.009 -27.582 4.093 -1.586 0.418 O13 TPU 8 TPU O5G O5G O 0 1 N N N 14.997 13.945 -27.425 2.453 0.189 -0.310 O5G TPU 9 TPU C5B C5B C 0 1 N N N 14.792 13.703 -26.064 1.217 -0.409 0.084 C5B TPU 10 TPU C5A C5A C 0 1 N N N 15.383 12.367 -25.656 0.091 0.106 -0.815 C5A TPU 11 TPU C5 C5 C 0 1 Y N N 15.152 11.882 -24.241 -1.213 -0.525 -0.400 C5 TPU 12 TPU C4 C4 C 0 1 Y N N 14.606 10.703 -23.880 -2.089 -0.046 0.513 C4 TPU 13 TPU C4A C4A C 0 1 N N N 14.072 9.606 -24.796 -1.957 1.223 1.316 C4A TPU 14 TPU N1 N1 N 0 1 Y N N 15.501 12.594 -23.088 -1.734 -1.666 -0.865 N1 TPU 15 TPU N2 N2 N 0 1 Y N N 15.167 11.826 -22.050 -2.856 -1.882 -0.275 N2 TPU 16 TPU N3 N3 N 0 1 Y N N 14.593 10.657 -22.516 -3.109 -0.935 0.560 N3 TPU 17 TPU C35 C35 C 0 1 N N N 14.117 9.539 -21.705 -4.297 -0.835 1.411 C35 TPU 18 TPU "C5'" "C5'" C 0 1 Y N N 12.623 9.648 -21.396 -5.377 -0.082 0.679 "C5'" TPU 19 TPU "C6'" "C6'" C 0 1 Y N N 11.776 8.728 -21.863 -5.543 1.277 0.863 "C6'" TPU 20 TPU "N1'" "N1'" N 0 1 Y N N 10.449 8.820 -21.591 -6.504 1.907 0.203 "N1'" TPU 21 TPU "C2'" "C2'" C 0 1 Y N N 9.963 9.902 -20.827 -7.299 1.257 -0.622 "C2'" TPU 22 TPU C2A C2A C 0 1 N N N 8.471 10.030 -20.545 -8.378 2.016 -1.350 C2A TPU 23 TPU "N3'" "N3'" N 0 1 Y N N 10.834 10.853 -20.348 -7.178 -0.039 -0.828 "N3'" TPU 24 TPU "C4'" "C4'" C 0 1 Y N N 12.111 10.762 -20.602 -6.233 -0.739 -0.206 "C4'" TPU 25 TPU "N4'" "N4'" N 0 1 N N N 13.019 11.745 -20.072 -6.105 -2.101 -0.430 "N4'" TPU 26 TPU H23 H23 H 0 1 N N N 17.536 18.547 -27.488 8.302 1.707 -1.022 H23 TPU 27 TPU H22 H22 H 0 1 N N N 19.264 15.846 -27.292 6.682 -0.665 -2.332 H22 TPU 28 TPU H12 H12 H 0 1 N N N 14.646 16.064 -30.101 3.641 1.356 2.018 H12 TPU 29 TPU H5B1 H5B1 H 0 0 N N N 15.276 14.501 -25.482 1.291 -1.492 -0.012 H5B1 TPU 30 TPU H5B2 H5B2 H 0 0 N N N 13.710 13.683 -25.869 1.002 -0.150 1.120 H5B2 TPU 31 TPU H5A1 H5A1 H 0 0 N N N 14.943 11.611 -26.323 0.017 1.189 -0.720 H5A1 TPU 32 TPU H5A2 H5A2 H 0 0 N N N 16.471 12.513 -25.724 0.306 -0.154 -1.852 H5A2 TPU 33 TPU H4A1 H4A1 H 0 0 N N N 13.943 10.007 -25.812 -2.413 2.048 0.769 H4A1 TPU 34 TPU H4A2 H4A2 H 0 0 N N N 14.785 8.769 -24.819 -2.462 1.100 2.275 H4A2 TPU 35 TPU H4A3 H4A3 H 0 0 N N N 13.102 9.252 -24.417 -0.902 1.437 1.486 H4A3 TPU 36 TPU H351 H351 H 0 0 N N N 14.294 8.604 -22.257 -4.653 -1.836 1.656 H351 TPU 37 TPU H352 H352 H 0 0 N N N 14.664 9.554 -20.751 -4.042 -0.305 2.329 H352 TPU 38 TPU "H6'" "H6'" H 0 1 N N N 12.148 7.908 -22.459 -4.896 1.819 1.538 "H6'" TPU 39 TPU H2A1 H2A1 H 0 0 N N N 8.304 10.061 -19.458 -7.986 2.383 -2.299 H2A1 TPU 40 TPU H2A2 H2A2 H 0 0 N N N 8.090 10.956 -21.001 -9.224 1.355 -1.538 H2A2 TPU 41 TPU H2A3 H2A3 H 0 0 N N N 7.942 9.166 -20.973 -8.703 2.859 -0.741 H2A3 TPU 42 TPU "H4'1" "H4'1" H 0 0 N N N 13.230 11.526 -19.119 -5.416 -2.605 0.031 "H4'1" TPU 43 TPU "H4'2" "H4'2" H 0 0 N N N 13.863 11.743 -20.609 -6.704 -2.550 -1.046 "H4'2" TPU 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TPU O23 P2 SING N N 1 TPU P2 O22 SING N N 2 TPU P2 O21 DOUB N N 3 TPU P2 O11 SING N N 4 TPU O11 P1 SING N N 5 TPU P1 O12 SING N N 6 TPU P1 O13 DOUB N N 7 TPU P1 O5G SING N N 8 TPU O5G C5B SING N N 9 TPU C5B C5A SING N N 10 TPU C5A C5 SING N N 11 TPU C5 C4 DOUB Y N 12 TPU C5 N1 SING Y N 13 TPU C4 C4A SING N N 14 TPU C4 N3 SING Y N 15 TPU N1 N2 DOUB Y N 16 TPU N2 N3 SING Y N 17 TPU N3 C35 SING N N 18 TPU C35 "C5'" SING N N 19 TPU "C5'" "C6'" SING Y N 20 TPU "C5'" "C4'" DOUB Y N 21 TPU "C6'" "N1'" DOUB Y N 22 TPU "N1'" "C2'" SING Y N 23 TPU "C2'" C2A SING N N 24 TPU "C2'" "N3'" DOUB Y N 25 TPU "N3'" "C4'" SING Y N 26 TPU "C4'" "N4'" SING N N 27 TPU O23 H23 SING N N 28 TPU O22 H22 SING N N 29 TPU O12 H12 SING N N 30 TPU C5B H5B1 SING N N 31 TPU C5B H5B2 SING N N 32 TPU C5A H5A1 SING N N 33 TPU C5A H5A2 SING N N 34 TPU C4A H4A1 SING N N 35 TPU C4A H4A2 SING N N 36 TPU C4A H4A3 SING N N 37 TPU C35 H351 SING N N 38 TPU C35 H352 SING N N 39 TPU "C6'" "H6'" SING N N 40 TPU C2A H2A1 SING N N 41 TPU C2A H2A2 SING N N 42 TPU C2A H2A3 SING N N 43 TPU "N4'" "H4'1" SING N N 44 TPU "N4'" "H4'2" SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TPU SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(OCCc1nnn(c1C)Cc2cnc(nc2N)C)O" TPU SMILES_CANONICAL CACTVS 3.352 "Cc1ncc(Cn2nnc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1" TPU SMILES CACTVS 3.352 "Cc1ncc(Cn2nnc(CCO[P](O)(=O)O[P](O)(O)=O)c2C)c(N)n1" TPU SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "Cc1c(nnn1Cc2cnc(nc2N)C)CCO[P@](=O)(O)OP(=O)(O)O" TPU SMILES "OpenEye OEToolkits" 1.6.1 "Cc1c(nnn1Cc2cnc(nc2N)C)CCOP(=O)(O)OP(=O)(O)O" TPU InChI InChI 1.03 "InChI=1S/C11H18N6O7P2/c1-7-10(3-4-23-26(21,22)24-25(18,19)20)15-16-17(7)6-9-5-13-8(2)14-11(9)12/h5H,3-4,6H2,1-2H3,(H,21,22)(H2,12,13,14)(H2,18,19,20)" TPU InChIKey InChI 1.03 WHMXQEYVWLIXHH-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TPU "SYSTEMATIC NAME" ACDLabs 10.04 "2-{1-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-methyl-1H-1,2,3-triazol-4-yl}ethyl trihydrogen diphosphate" TPU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "2-[1-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-5-methyl-1,2,3-triazol-4-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TPU "Create component" 2009-10-16 EBI TPU "Modify aromatic_flag" 2011-06-04 RCSB TPU "Modify descriptor" 2011-06-04 RCSB #