data_TR5 # _chem_comp.id TR5 _chem_comp.name "5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H17 N6 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Triciribine phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-07-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 400.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TR5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4FYH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TR5 O2 O2 O 0 1 N N N 15.713 38.862 5.576 -6.343 -0.568 -0.365 O2 TR5 1 TR5 PB PB P 0 1 N N N 17.102 39.384 6.163 -5.187 -1.302 0.196 PB TR5 2 TR5 O3 O3 O 0 1 N N N 16.936 39.768 7.577 -5.636 -2.064 1.541 O3 TR5 3 TR5 O1 O1 O 0 1 N N N 18.145 38.400 5.795 -4.662 -2.379 -0.881 O1 TR5 4 TR5 "O5'" O5* O 0 1 N N N 17.361 40.724 5.302 -4.005 -0.264 0.536 O5* TR5 5 TR5 "C5'" C5* C 0 1 N N N 17.114 40.739 3.894 -3.461 0.640 -0.428 C5* TR5 6 TR5 "C4'" C4* C 0 1 N N R 17.405 42.139 3.363 -2.361 1.480 0.224 C4* TR5 7 TR5 "O4'" O4* O 0 1 N N N 18.659 42.553 3.910 -1.249 0.640 0.577 O4* TR5 8 TR5 "C3'" C3* C 0 1 N N S 17.545 42.089 1.850 -1.841 2.530 -0.776 C3* TR5 9 TR5 "O3'" O3* O 0 1 N N N 16.655 43.049 1.247 -2.045 3.850 -0.267 O3* TR5 10 TR5 "C2'" C2* C 0 1 N N R 19.031 42.369 1.546 -0.329 2.222 -0.900 C2* TR5 11 TR5 "O2'" O2* O 0 1 N N N 19.194 43.566 0.763 0.437 3.428 -0.934 O2* TR5 12 TR5 "C1'" C1* C 0 1 N N R 19.735 42.464 2.936 -0.052 1.428 0.403 C1* TR5 13 TR5 N9 N9 N 0 1 Y N N 20.527 41.214 3.209 1.118 0.562 0.241 N9 TR5 14 TR5 C8 C8 C 0 1 Y N N 20.299 40.297 4.166 1.062 -0.774 -0.122 C8 TR5 15 TR5 C7 C7 C 0 1 Y N N 21.205 39.321 4.047 2.307 -1.284 -0.184 C7 TR5 16 TR5 C5 C5 C 0 1 Y N N 21.969 39.654 3.019 3.172 -0.161 0.170 C5 TR5 17 TR5 C4 C4 C 0 1 Y N N 21.580 40.810 2.489 2.409 0.963 0.420 C4 TR5 18 TR5 N3 N3 N 0 1 Y N N 22.231 41.328 1.426 3.118 2.046 0.754 N3 TR5 19 TR5 C2 C2 C 0 1 Y N N 23.392 40.614 0.827 4.435 1.976 0.820 C2 TR5 20 TR5 N1 N1 N 0 1 Y N N 23.705 39.329 1.535 5.166 0.892 0.578 N1 TR5 21 TR5 C6 C6 C 0 1 Y N N 22.985 38.905 2.594 4.552 -0.235 0.234 C6 TR5 22 TR5 N61 N61 N 0 1 N N N 23.253 37.750 3.253 5.123 -1.449 -0.054 N61 TR5 23 TR5 C62 C62 C 0 1 N N N 24.377 36.874 2.834 6.579 -1.597 0.004 C62 TR5 24 TR5 N71 N71 N 0 1 N N N 22.513 37.396 4.273 4.327 -2.549 -0.402 N71 TR5 25 TR5 C72 C72 C 0 1 N N N 21.480 38.169 4.685 3.020 -2.540 -0.478 C72 TR5 26 TR5 N73 N73 N 0 1 N N N 20.709 37.842 5.726 2.320 -3.690 -0.829 N73 TR5 27 TR5 H1 H1 H 0 1 N N N 16.035 39.623 7.841 -6.347 -2.707 1.410 H1 TR5 28 TR5 H2 H2 H 0 1 N N N 17.752 37.691 5.299 -3.904 -2.898 -0.580 H2 TR5 29 TR5 H3 H3 H 0 1 N N N 16.063 40.480 3.700 -3.041 0.074 -1.260 H3 TR5 30 TR5 H4 H4 H 0 1 N N N 17.769 40.010 3.395 -4.249 1.296 -0.796 H4 TR5 31 TR5 H5 H5 H 0 1 N N N 16.595 42.827 3.646 -2.750 1.973 1.115 H5 TR5 32 TR5 H6 H6 H 0 1 N N N 17.299 41.075 1.501 -2.334 2.414 -1.742 H6 TR5 33 TR5 H7 H7 H 0 1 N N N 15.757 42.830 1.466 -1.736 4.551 -0.857 H7 TR5 34 TR5 H8 H8 H 0 1 N N N 19.447 41.506 1.005 -0.127 1.609 -1.778 H8 TR5 35 TR5 H9 H9 H 0 1 N N N 20.117 43.710 0.593 0.233 4.002 -1.685 H9 TR5 36 TR5 H10 H10 H 0 1 N N N 20.384 43.352 2.969 0.089 2.108 1.244 H10 TR5 37 TR5 H11 H11 H 0 1 N N N 19.515 40.342 4.907 0.156 -1.325 -0.324 H11 TR5 38 TR5 H12 H12 H 0 1 N N N 23.948 40.981 -0.023 4.964 2.876 1.094 H12 TR5 39 TR5 H13 H13 H 0 1 N N N 24.422 35.994 3.493 6.874 -1.899 1.009 H13 TR5 40 TR5 H14 H14 H 0 1 N N N 24.219 36.547 1.796 6.896 -2.355 -0.711 H14 TR5 41 TR5 H15 H15 H 0 1 N N N 25.322 37.432 2.903 7.051 -0.646 -0.242 H15 TR5 42 TR5 H16 H16 H 0 1 N N N 20.885 36.998 6.233 1.352 -3.670 -0.883 H16 TR5 43 TR5 H17 H17 H 0 1 N N N 19.956 38.441 5.998 2.800 -4.510 -1.021 H17 TR5 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TR5 "O2'" "C2'" SING N N 1 TR5 C2 N3 DOUB Y N 2 TR5 C2 N1 SING Y N 3 TR5 "O3'" "C3'" SING N N 4 TR5 N3 C4 SING Y N 5 TR5 N1 C6 DOUB Y N 6 TR5 "C2'" "C3'" SING N N 7 TR5 "C2'" "C1'" SING N N 8 TR5 "C3'" "C4'" SING N N 9 TR5 C4 C5 DOUB Y N 10 TR5 C4 N9 SING Y N 11 TR5 C6 C5 SING Y N 12 TR5 C6 N61 SING N N 13 TR5 C62 N61 SING N N 14 TR5 "C1'" N9 SING N N 15 TR5 "C1'" "O4'" SING N N 16 TR5 C5 C7 SING Y N 17 TR5 N9 C8 SING Y N 18 TR5 N61 N71 SING N N 19 TR5 "C4'" "C5'" SING N N 20 TR5 "C4'" "O4'" SING N N 21 TR5 "C5'" "O5'" SING N N 22 TR5 C7 C8 DOUB Y N 23 TR5 C7 C72 SING N N 24 TR5 N71 C72 DOUB N N 25 TR5 C72 N73 SING N N 26 TR5 "O5'" PB SING N N 27 TR5 O2 PB DOUB N N 28 TR5 O1 PB SING N N 29 TR5 PB O3 SING N N 30 TR5 O3 H1 SING N N 31 TR5 O1 H2 SING N N 32 TR5 "C5'" H3 SING N N 33 TR5 "C5'" H4 SING N N 34 TR5 "C4'" H5 SING N N 35 TR5 "C3'" H6 SING N N 36 TR5 "O3'" H7 SING N N 37 TR5 "C2'" H8 SING N N 38 TR5 "O2'" H9 SING N N 39 TR5 "C1'" H10 SING N N 40 TR5 C8 H11 SING N N 41 TR5 C2 H12 SING N N 42 TR5 C62 H13 SING N N 43 TR5 C62 H14 SING N N 44 TR5 C62 H15 SING N N 45 TR5 N73 H16 SING N N 46 TR5 N73 H17 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TR5 SMILES ACDLabs 12.01 "O=P(O)(O)OCC4OC(n1cc2C(=NN(c3ncnc1c23)C)N)C(O)C4O" TR5 InChI InChI 1.03 "InChI=1S/C13H17N6O7P/c1-18-11-7-5(10(14)17-18)2-19(12(7)16-4-15-11)13-9(21)8(20)6(26-13)3-25-27(22,23)24/h2,4,6,8-9,13,20-21H,3H2,1H3,(H2,14,17)(H2,22,23,24)/t6-,8-,9-,13-/m1/s1" TR5 InChIKey InChI 1.03 URLYINUFLXOMHP-HTVVRFAVSA-N TR5 SMILES_CANONICAL CACTVS 3.370 "CN1N=C(N)c2cn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c4ncnc1c24" TR5 SMILES CACTVS 3.370 "CN1N=C(N)c2cn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c4ncnc1c24" TR5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1c2c3c(cn(c3ncn2)[C@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)O)C(=N1)N" TR5 SMILES "OpenEye OEToolkits" 1.7.6 "CN1c2c3c(cn(c3ncn2)C4C(C(C(O4)COP(=O)(O)O)O)O)C(=N1)N" # _pdbx_chem_comp_identifier.comp_id TR5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen-3-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TR5 "Create component" 2012-07-13 RCSB TR5 "Initial release" 2012-12-28 RCSB TR5 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TR5 _pdbx_chem_comp_synonyms.name "Triciribine phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##