data_TR9 # _chem_comp.id TR9 _chem_comp.name "(5S)-2,5-dihydroxy-3-methylcyclohex-2-ene-1,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-02-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 156.136 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TR9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KQA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TR9 C1 C1 C 0 1 N N N N N N 13.463 51.176 -133.660 -0.370 1.653 0.442 C1 TR9 1 TR9 C2 C2 C 0 1 N N S N N N 13.151 49.722 -134.122 -1.392 0.793 -0.309 C2 TR9 2 TR9 C3 C3 C 0 1 N N N N N N 12.692 49.722 -135.579 -1.053 -0.663 -0.147 C3 TR9 3 TR9 C4 C4 C 0 1 N N N N N N 11.786 50.830 -136.042 0.278 -1.113 -0.016 C4 TR9 4 TR9 C5 C5 C 0 1 N N N N N N 11.397 51.889 -135.027 1.314 -0.237 0.057 C5 TR9 5 TR9 C6 C6 C 0 1 N N N N N N 12.198 52.064 -133.880 1.016 1.216 0.011 C6 TR9 6 TR9 C7 C7 C 0 1 N N N N N N 11.350 50.866 -137.346 0.555 -2.593 0.045 C7 TR9 7 TR9 O1 O1 O 0 1 N N N N N N 10.253 52.650 -135.286 2.587 -0.679 0.168 O1 TR9 8 TR9 O2 O2 O 0 1 N N N N N N 14.283 48.907 -133.959 -2.697 1.038 0.218 O2 TR9 9 TR9 O3 O3 O 0 1 N N N N N N 13.102 48.744 -136.428 -1.953 -1.477 -0.127 O3 TR9 10 TR9 O4 O4 O 0 1 N N N N N N 11.892 53.013 -132.945 1.843 2.017 -0.354 O4 TR9 11 TR9 H1 H1 H 0 1 N N N N N N 13.732 51.175 -132.593 -0.519 2.704 0.192 H1 TR9 12 TR9 H2 H2 H 0 1 N N N N N N 12.340 49.316 -133.500 -1.375 1.052 -1.368 H2 TR9 13 TR9 H3 H3 H 0 1 N N N N N N 10.702 51.743 -137.493 0.715 -2.974 -0.964 H3 TR9 14 TR9 H4 H4 H 0 1 N N N N N N 12.216 50.934 -138.020 1.447 -2.771 0.645 H4 TR9 15 TR9 H5 H5 H 0 1 N N N N N N 10.123 53.276 -134.584 3.246 0.027 0.212 H5 TR9 16 TR9 H6 H6 H 0 1 N N N N N N 14.446 48.426 -134.762 -3.397 0.526 -0.211 H6 TR9 17 TR9 H7 H7 H 0 1 N N N N N N 10.783 49.950 -137.568 -0.295 -3.104 0.496 H7 TR9 18 TR9 H8 H8 H 0 1 N N N N N N 14.302 51.578 -134.247 -0.485 1.509 1.516 H8 TR9 19 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TR9 C1 C2 SING N N 1 TR9 C1 C6 SING N N 2 TR9 C1 H1 SING N N 3 TR9 C2 C3 SING N N 4 TR9 C2 O2 SING N N 5 TR9 C2 H2 SING N N 6 TR9 C3 C4 SING N N 7 TR9 C3 O3 DOUB N N 8 TR9 C4 C5 DOUB N N 9 TR9 C4 C7 SING N N 10 TR9 C5 C6 SING N N 11 TR9 C5 O1 SING N N 12 TR9 C6 O4 DOUB N N 13 TR9 C7 H3 SING N N 14 TR9 C7 H4 SING N N 15 TR9 C7 H7 SING N N 16 TR9 O1 H5 SING N N 17 TR9 O2 H6 SING N N 18 TR9 C1 H8 SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TR9 SMILES ACDLabs 12.01 "O=C1C(O)=C(C(=O)C(O)C1)C" TR9 SMILES_CANONICAL CACTVS 3.370 "CC1=C(O)C(=O)C[C@H](O)C1=O" TR9 SMILES CACTVS 3.370 "CC1=C(O)C(=O)C[CH](O)C1=O" TR9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=C(C(=O)C[C@@H](C1=O)O)O" TR9 SMILES "OpenEye OEToolkits" 1.7.0 "CC1=C(C(=O)CC(C1=O)O)O" TR9 InChI InChI 1.03 "InChI=1S/C7H8O4/c1-3-6(10)4(8)2-5(9)7(3)11/h4,8,11H,2H2,1H3/t4-/m0/s1" TR9 InChIKey InChI 1.03 CWBLUSPNRBEFNW-BYPYZUCNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TR9 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-2,5-dihydroxy-3-methylcyclohex-2-ene-1,4-dione" TR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(5S)-2,5-dihydroxy-3-methyl-cyclohex-2-ene-1,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TR9 "Create component" 2011-02-17 RCSB TR9 "Modify descriptor" 2011-06-04 RCSB TR9 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id TR9 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #