data_TS5
#
_chem_comp.id TS5
_chem_comp.name GLUTATHIONYLSPERMIDINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H34 N6 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2001-02-28
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 434.554
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TS5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1I5G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TS5 N1 N1 N 0 1 N N N N N N 18.830 29.870 8.502 2.484 -0.395 -8.507 N1 TS5 1
TS5 CA1 CA1 C 0 1 N N S N N N 19.146 28.982 9.644 1.042 -0.227 -8.736 CA1 TS5 2
TS5 C1 C1 C 0 1 N N N N N N 17.879 28.503 10.301 0.824 0.718 -9.889 C1 TS5 3
TS5 OE1 OE1 O 0 1 N N N N N N 17.906 27.486 11.031 1.627 1.592 -10.114 OE1 TS5 4
TS5 OE2 OE2 O 0 1 N N N N N N 16.822 29.155 10.108 -0.262 0.589 -10.665 OE2 TS5 5
TS5 CB1 CB1 C 0 1 N N N N N N 20.007 29.636 10.727 0.389 0.344 -7.476 CB1 TS5 6
TS5 CG1 CG1 C 0 1 N N N N N N 19.248 30.686 11.530 0.611 -0.615 -6.306 CG1 TS5 7
TS5 CD1 CD1 C 0 1 N N N N N N 20.288 31.582 12.141 -0.031 -0.052 -5.065 CD1 TS5 8
TS5 O1 O1 O 0 1 N N N N N N 20.972 32.482 11.482 -0.610 1.012 -5.112 O1 TS5 9
TS5 N2 N2 N 0 1 N N N N N N 20.521 31.486 13.448 0.036 -0.731 -3.903 N2 TS5 10
TS5 CA2 CA2 C 0 1 N N R N N N 21.640 32.037 14.148 -0.589 -0.184 -2.696 CA2 TS5 11
TS5 C2 C2 C 0 1 N N N N N N 22.492 31.044 14.905 0.176 -0.641 -1.482 C2 TS5 12
TS5 O2 O2 O 0 1 N N N N N N 21.954 30.039 15.614 1.148 -1.355 -1.611 O2 TS5 13
TS5 CB2 CB2 C 0 1 N N N N N N 21.083 32.990 15.207 -2.034 -0.675 -2.603 CB2 TS5 14
TS5 SG2 SG2 S 0 1 N N N N N N 19.770 34.107 14.652 -2.956 -0.124 -4.065 SG2 TS5 15
TS5 N3 N3 N 0 1 N N N N N N 23.789 31.382 14.783 -0.219 -0.258 -0.252 N3 TS5 16
TS5 CA3 CA3 C 0 1 N N N N N N 24.753 30.693 15.616 0.524 -0.703 0.928 CA3 TS5 17
TS5 C3 C3 C 0 1 N N N N N N 25.768 29.918 14.816 -0.118 -0.140 2.169 C3 TS5 18
TS5 O3 O3 O 0 1 N N N N N N 25.317 29.339 13.729 -1.101 0.563 2.076 O3 TS5 19
TS5 "N1'" "N1'" N 0 1 N N N N N N 27.055 29.774 15.099 0.398 -0.418 3.382 "N1'" TS5 20
TS5 "C1'" "C1'" C 0 1 N N N N N N 27.810 28.671 14.557 -0.226 0.129 4.588 "C1'" TS5 21
TS5 "C2'" "C2'" C 0 1 N N N N N N 28.912 29.300 13.723 0.550 -0.335 5.822 "C2'" TS5 22
TS5 "N2'" "N2'" N 0 1 N N N N N N 30.925 28.770 12.350 0.643 -0.209 8.266 "N2'" TS5 23
TS5 "C3'" "C3'" C 0 1 N N N N N N 29.943 28.253 13.297 -0.102 0.236 7.082 "C3'" TS5 24
TS5 "C4'" "C4'" C 0 1 N N N N N N 31.911 27.797 11.900 -0.031 0.370 9.434 "C4'" TS5 25
TS5 "C5'" "C5'" C 0 1 N N N N N N 33.211 28.401 11.361 0.697 -0.056 10.709 "C5'" TS5 26
TS5 "C6'" "C6'" C 0 1 N N N N N N 34.298 27.367 11.066 -0.005 0.548 11.926 "C6'" TS5 27
TS5 "C7'" "C7'" C 0 1 N N N N N N 35.294 27.823 10.003 0.723 0.121 13.201 "C7'" TS5 28
TS5 "N3'" "N3'" N 0 1 N N N N N N 36.402 26.917 9.719 0.048 0.702 14.369 "N3'" TS5 29
TS5 HN11 1HN1 H 0 0 N N N N N N 19.688 30.194 8.056 2.852 0.519 -8.295 HN11 TS5 30
TS5 HN12 2HN1 H 0 0 N N N N N N 18.228 30.645 8.778 2.582 -0.948 -7.669 HN12 TS5 31
TS5 HA1 HA1 H 0 1 N N N N N N 19.729 28.141 9.201 0.596 -1.194 -8.969 HA1 TS5 32
TS5 HO2 HO2 H 0 1 N N N N N N 16.022 28.852 10.522 -0.403 1.196 -11.405 HO2 TS5 33
TS5 HB11 1HB1 H 0 0 N N N N N N 20.456 28.867 11.398 -0.679 0.469 -7.646 HB11 TS5 34
TS5 HB12 2HB1 H 0 0 N N N N N N 20.940 30.063 10.291 0.835 1.311 -7.242 HB12 TS5 35
TS5 HG11 1HG1 H 0 0 N N N N N N 18.485 31.236 10.930 1.681 -0.740 -6.136 HG11 TS5 36
TS5 HG12 2HG1 H 0 0 N N N N N N 18.545 30.249 12.277 0.165 -1.582 -6.539 HG12 TS5 37
TS5 HN2 HN2 H 0 1 N N N N N N 19.800 30.959 13.941 0.499 -1.583 -3.865 HN2 TS5 38
TS5 HA2 HA2 H 0 1 N N N N N N 22.286 32.501 13.367 -0.577 0.904 -2.744 HA2 TS5 39
TS5 HB21 1HB2 H 0 0 N N N N N N 20.737 32.410 16.094 -2.045 -1.764 -2.556 HB21 TS5 40
TS5 HB22 2HB2 H 0 0 N N N N N N 21.913 33.577 15.662 -2.500 -0.268 -1.706 HB22 TS5 41
TS5 HG2 HG2 H 0 1 N N N N N N 19.424 34.698 15.309 -4.164 -0.647 -3.791 HG2 TS5 42
TS5 HN3 HN3 H 0 1 N N N N N N 24.024 32.108 14.107 -0.996 0.312 -0.148 HN3 TS5 43
TS5 HA31 1HA3 H 0 0 N N N N N N 25.253 31.401 16.317 1.554 -0.353 0.862 HA31 TS5 44
TS5 HA32 2HA3 H 0 0 N N N N N N 24.242 30.035 16.357 0.513 -1.792 0.976 HA32 TS5 45
TS5 "HN1'" "'HN1" H 0 0 N N N N N N 27.450 30.486 15.712 1.185 -0.981 3.456 "HN1'" TS5 46
TS5 "H1'1" "1H1'" H 0 0 N N N N N N 28.184 27.961 15.331 -1.256 -0.221 4.655 "H1'1" TS5 47
TS5 "H1'2" "2H1'" H 0 0 N N N N N N 27.187 27.936 13.994 -0.215 1.218 4.541 "H1'2" TS5 48
TS5 "H2'1" "1H2'" H 0 0 N N N N N N 28.499 29.851 12.846 1.580 0.014 5.755 "H2'1" TS5 49
TS5 "H2'2" "2H2'" H 0 0 N N N N N N 29.390 30.156 14.252 0.539 -1.424 5.869 "H2'2" TS5 50
TS5 "HN2'" "'HN2" H 0 0 N N N N N N 31.390 29.591 12.736 1.554 0.220 8.214 "HN2'" TS5 51
TS5 "H3'1" "1H3'" H 0 0 N N N N N N 30.445 27.805 14.185 -1.132 -0.114 7.148 "H3'1" TS5 52
TS5 "H3'2" "2H3'" H 0 0 N N N N N N 29.441 27.342 12.892 -0.091 1.325 7.034 "H3'2" TS5 53
TS5 "H4'1" "1H4'" H 0 0 N N N N N N 32.132 27.067 12.713 -1.062 0.018 9.470 "H4'1" TS5 54
TS5 "H4'2" "2H4'" H 0 0 N N N N N N 31.460 27.112 11.143 -0.021 1.458 9.356 "H4'2" TS5 55
TS5 "H5'1" "1H5'" H 0 0 N N N N N N 33.009 29.026 10.459 1.728 0.295 10.673 "H5'1" TS5 56
TS5 "H5'2" "2H5'" H 0 0 N N N N N N 33.594 29.187 12.052 0.687 -1.143 10.787 "H5'2" TS5 57
TS5 "H6'1" "1H6'" H 0 0 N N N N N N 34.826 27.070 12.001 -1.036 0.196 11.962 "H6'1" TS5 58
TS5 "H6'2" "2H6'" H 0 0 N N N N N N 33.846 26.385 10.790 0.004 1.636 11.848 "H6'2" TS5 59
TS5 "H7'1" "1H7'" H 0 0 N N N N N N 34.752 28.060 9.058 1.754 0.473 13.165 "H7'1" TS5 60
TS5 "H7'2" "2H7'" H 0 0 N N N N N N 35.691 28.830 10.268 0.713 -0.965 13.279 "H7'2" TS5 61
TS5 HN31 1HN3 H 0 0 N N N N N N 37.067 27.221 9.008 0.560 0.396 15.183 HN31 TS5 62
TS5 HN32 2HN3 H 0 0 N N N N N N 36.038 25.995 9.476 0.171 1.702 14.308 HN32 TS5 63
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TS5 N1 CA1 SING N N 1
TS5 N1 HN11 SING N N 2
TS5 N1 HN12 SING N N 3
TS5 CA1 C1 SING N N 4
TS5 CA1 CB1 SING N N 5
TS5 CA1 HA1 SING N N 6
TS5 C1 OE1 DOUB N N 7
TS5 C1 OE2 SING N N 8
TS5 OE2 HO2 SING N N 9
TS5 CB1 CG1 SING N N 10
TS5 CB1 HB11 SING N N 11
TS5 CB1 HB12 SING N N 12
TS5 CG1 CD1 SING N N 13
TS5 CG1 HG11 SING N N 14
TS5 CG1 HG12 SING N N 15
TS5 CD1 O1 DOUB N N 16
TS5 CD1 N2 SING N N 17
TS5 N2 CA2 SING N N 18
TS5 N2 HN2 SING N N 19
TS5 CA2 C2 SING N N 20
TS5 CA2 CB2 SING N N 21
TS5 CA2 HA2 SING N N 22
TS5 C2 O2 DOUB N N 23
TS5 C2 N3 SING N N 24
TS5 CB2 SG2 SING N N 25
TS5 CB2 HB21 SING N N 26
TS5 CB2 HB22 SING N N 27
TS5 SG2 HG2 SING N N 28
TS5 N3 CA3 SING N N 29
TS5 N3 HN3 SING N N 30
TS5 CA3 C3 SING N N 31
TS5 CA3 HA31 SING N N 32
TS5 CA3 HA32 SING N N 33
TS5 C3 O3 DOUB N N 34
TS5 C3 "N1'" SING N N 35
TS5 "N1'" "C1'" SING N N 36
TS5 "N1'" "HN1'" SING N N 37
TS5 "C1'" "C2'" SING N N 38
TS5 "C1'" "H1'1" SING N N 39
TS5 "C1'" "H1'2" SING N N 40
TS5 "C2'" "C3'" SING N N 41
TS5 "C2'" "H2'1" SING N N 42
TS5 "C2'" "H2'2" SING N N 43
TS5 "N2'" "C3'" SING N N 44
TS5 "N2'" "C4'" SING N N 45
TS5 "N2'" "HN2'" SING N N 46
TS5 "C3'" "H3'1" SING N N 47
TS5 "C3'" "H3'2" SING N N 48
TS5 "C4'" "C5'" SING N N 49
TS5 "C4'" "H4'1" SING N N 50
TS5 "C4'" "H4'2" SING N N 51
TS5 "C5'" "C6'" SING N N 52
TS5 "C5'" "H5'1" SING N N 53
TS5 "C5'" "H5'2" SING N N 54
TS5 "C6'" "C7'" SING N N 55
TS5 "C6'" "H6'1" SING N N 56
TS5 "C6'" "H6'2" SING N N 57
TS5 "C7'" "N3'" SING N N 58
TS5 "C7'" "H7'1" SING N N 59
TS5 "C7'" "H7'2" SING N N 60
TS5 "N3'" HN31 SING N N 61
TS5 "N3'" HN32 SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TS5 SMILES ACDLabs 10.04 "O=C(NCC(=O)NCCCNCCCCN)C(NC(=O)CCC(C(=O)O)N)CS"
TS5 SMILES_CANONICAL CACTVS 3.341 "NCCCCNCCCNC(=O)CNC(=O)[C@H](CS)NC(=O)CC[C@H](N)C(O)=O"
TS5 SMILES CACTVS 3.341 "NCCCCNCCCNC(=O)CNC(=O)[CH](CS)NC(=O)CC[CH](N)C(O)=O"
TS5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CCNCCCNC(=O)CNC(=O)[C@H](CS)NC(=O)CC[C@@H](C(=O)O)N)CN"
TS5 SMILES "OpenEye OEToolkits" 1.5.0 "C(CCNCCCNC(=O)CNC(=O)C(CS)NC(=O)CCC(C(=O)O)N)CN"
TS5 InChI InChI 1.03 "InChI=1S/C17H34N6O5S/c18-6-1-2-7-20-8-3-9-21-15(25)10-22-16(26)13(11-29)23-14(24)5-4-12(19)17(27)28/h12-13,20,29H,1-11,18-19H2,(H,21,25)(H,22,26)(H,23,24)(H,27,28)/t12-,13-/m0/s1"
TS5 InChIKey InChI 1.03 NEDQLXHBVHSKNV-STQMWFEESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TS5 "SYSTEMATIC NAME" ACDLabs 10.04 "L-gamma-glutamyl-L-cysteinyl-N-{3-[(4-aminobutyl)amino]propyl}glycinamide"
TS5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-[[(2R)-1-[[2-[3-(4-aminobutylamino)propylamino]-2-oxo-ethyl]amino]-1-oxo-3-sulfanyl-propan-2-yl]amino]-5-oxo-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TS5 "Create component" 2001-02-28 EBI
TS5 "Modify descriptor" 2011-06-04 RCSB
TS5 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id TS5
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom SG2
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#