data_TT8 # _chem_comp.id TT8 _chem_comp.name ;(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H22 N6 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "S-(N6-Methyladenosyl)-L-homocysteine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.437 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TT8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SR4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TT8 C C C 0 1 N N N 41.941 53.507 0.977 -7.495 -1.820 0.119 C TT8 1 TT8 N N N 0 1 N N N 41.821 51.139 1.604 -7.257 0.406 -0.826 N TT8 2 TT8 O O O 0 1 N N N 42.688 53.112 0.064 -8.468 -1.399 0.700 O TT8 3 TT8 C1 C1 C 0 1 N N N 47.507 43.517 9.610 7.402 -3.356 -0.375 C1 TT8 4 TT8 N1 N1 N 0 1 Y N N 43.845 43.658 8.614 6.420 -0.872 0.461 N1 TT8 5 TT8 C2 C2 C 0 1 Y N N 42.805 44.499 8.190 6.022 0.317 0.874 C2 TT8 6 TT8 N3 N3 N 0 1 Y N N 43.089 45.858 8.033 4.766 0.705 0.805 N3 TT8 7 TT8 C4 C4 C 0 1 Y N N 44.346 46.364 8.282 3.834 -0.102 0.309 C4 TT8 8 TT8 C5 C5 C 0 1 Y N N 45.393 45.520 8.708 4.208 -1.379 -0.144 C5 TT8 9 TT8 C6 C6 C 0 1 Y N N 45.133 44.138 8.876 5.560 -1.747 -0.050 C6 TT8 10 TT8 N6 N6 N 0 1 N N N 46.076 43.257 9.276 5.988 -2.991 -0.480 N6 TT8 11 TT8 N7 N7 N 0 1 Y N N 46.492 46.284 8.867 3.084 -1.988 -0.593 N7 TT8 12 TT8 C8 C8 C 0 1 Y N N 46.195 47.565 8.563 2.069 -1.185 -0.449 C8 TT8 13 TT8 N9 N9 N 0 1 Y N N 44.863 47.628 8.197 2.481 -0.009 0.104 N9 TT8 14 TT8 CA CA C 0 1 N N S 41.515 52.530 2.076 -6.561 -0.864 -0.577 CA TT8 15 TT8 CB CB C 0 1 N N N 42.202 52.807 3.445 -5.338 -0.610 0.307 CB TT8 16 TT8 SD SD S 0 1 N N N 44.539 53.004 5.027 -2.883 0.560 0.598 SD TT8 17 TT8 CG CG C 0 1 N N N 43.741 52.670 3.440 -4.333 0.260 -0.450 CG TT8 18 TT8 "C1'" "C1'" C 0 1 N N R 44.096 48.820 7.771 1.633 1.143 0.421 "C1'" TT8 19 TT8 "C2'" "C2'" C 0 1 N N R 44.288 50.015 8.679 1.656 2.172 -0.737 "C2'" TT8 20 TT8 "O2'" "O2'" O 0 1 N N N 43.478 49.934 9.824 2.758 3.071 -0.600 "O2'" TT8 21 TT8 "C3'" "C3'" C 0 1 N N S 43.924 51.184 7.767 0.311 2.914 -0.539 "C3'" TT8 22 TT8 "O3'" "O3'" O 0 1 N N N 42.631 51.714 7.998 0.514 4.136 0.174 "O3'" TT8 23 TT8 "C4'" "C4'" C 0 1 N N S 44.084 50.621 6.356 -0.539 1.937 0.297 "C4'" TT8 24 TT8 "O4'" "O4'" O 0 1 N N N 44.519 49.270 6.492 0.246 0.749 0.495 "O4'" TT8 25 TT8 "C5'" "C5'" C 0 1 N N N 45.131 51.373 5.546 -1.825 1.591 -0.455 "C5'" TT8 26 TT8 OXT OXT O 0 1 N N N 41.569 54.699 0.984 -7.243 -3.138 0.100 OXT TT8 27 TT8 HN HN H 0 1 N N N 41.551 50.481 2.307 -7.564 0.826 0.038 HN TT8 28 TT8 HNA HNA H 0 1 N N N 41.314 50.954 0.762 -6.673 1.041 -1.349 HNA TT8 29 TT8 H1 H1 H 0 1 N N N 47.994 42.574 9.900 7.710 -3.319 0.670 H1 TT8 30 TT8 H1A H1A H 0 1 N N N 48.018 43.938 8.731 7.546 -4.366 -0.760 H1A TT8 31 TT8 H1B H1B H 0 1 N N N 47.565 44.231 10.445 8.003 -2.656 -0.956 H1B TT8 32 TT8 H2 H2 H 0 1 N N N 41.818 44.109 7.992 6.754 0.998 1.283 H2 TT8 33 TT8 HN6 HN6 H 0 1 N N N 46.126 42.607 8.518 5.350 -3.621 -0.851 HN6 TT8 34 TT8 H8 H8 H 0 1 N N N 46.881 48.399 8.599 1.052 -1.417 -0.727 H8 TT8 35 TT8 HA HA H 0 1 N N N 40.437 52.659 2.254 -6.241 -1.295 -1.526 HA TT8 36 TT8 HB HB H 0 1 N N N 41.959 53.839 3.738 -5.648 -0.098 1.218 HB TT8 37 TT8 HBA HBA H 0 1 N N N 41.804 52.083 4.171 -4.873 -1.562 0.565 HBA TT8 38 TT8 HG HG H 0 1 N N N 43.984 51.636 3.154 -4.023 -0.252 -1.362 HG TT8 39 TT8 HGA HGA H 0 1 N N N 44.139 53.388 2.708 -4.799 1.211 -0.708 HGA TT8 40 TT8 "H1'" "H1'" H 0 1 N N N 43.048 48.485 7.785 1.953 1.608 1.354 "H1'" TT8 41 TT8 "H2'" "H2'" H 0 1 N N N 45.304 50.103 9.092 1.684 1.670 -1.704 "H2'" TT8 42 TT8 "HO2'" "HO2'" H 0 0 N N N 43.623 50.698 10.370 2.815 3.734 -1.301 "HO2'" TT8 43 TT8 "H3'" "H3'" H 0 1 N N N 44.574 52.051 7.953 -0.163 3.108 -1.501 "H3'" TT8 44 TT8 "HO3'" "HO3'" H 0 0 N N N 42.472 52.434 7.399 1.090 4.765 -0.281 "HO3'" TT8 45 TT8 "H4'" "H4'" H 0 1 N N N 43.123 50.713 5.829 -0.780 2.386 1.260 "H4'" TT8 46 TT8 "H5'" "H5'" H 0 1 N N N 45.372 50.784 4.649 -1.578 1.046 -1.366 "H5'" TT8 47 TT8 "H5'A" "H5'A" H 0 0 N N N 46.029 51.505 6.167 -2.353 2.509 -0.713 "H5'A" TT8 48 TT8 H22 H22 H 0 1 N N N 41.941 55.152 0.237 -7.868 -3.711 0.564 H22 TT8 49 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TT8 C O DOUB N N 1 TT8 C CA SING N N 2 TT8 C OXT SING N N 3 TT8 N CA SING N N 4 TT8 N HN SING N N 5 TT8 N HNA SING N N 6 TT8 C1 N6 SING N N 7 TT8 C1 H1 SING N N 8 TT8 C1 H1A SING N N 9 TT8 C1 H1B SING N N 10 TT8 N1 C2 DOUB Y N 11 TT8 N1 C6 SING Y N 12 TT8 C2 N3 SING Y N 13 TT8 C2 H2 SING N N 14 TT8 N3 C4 DOUB Y N 15 TT8 C4 C5 SING Y N 16 TT8 C4 N9 SING Y N 17 TT8 C5 C6 DOUB Y N 18 TT8 C5 N7 SING Y N 19 TT8 C6 N6 SING N N 20 TT8 N6 HN6 SING N N 21 TT8 N7 C8 DOUB Y N 22 TT8 C8 N9 SING Y N 23 TT8 C8 H8 SING N N 24 TT8 N9 "C1'" SING N N 25 TT8 CA CB SING N N 26 TT8 CA HA SING N N 27 TT8 CB CG SING N N 28 TT8 CB HB SING N N 29 TT8 CB HBA SING N N 30 TT8 SD CG SING N N 31 TT8 SD "C5'" SING N N 32 TT8 CG HG SING N N 33 TT8 CG HGA SING N N 34 TT8 "C1'" "C2'" SING N N 35 TT8 "C1'" "O4'" SING N N 36 TT8 "C1'" "H1'" SING N N 37 TT8 "C2'" "O2'" SING N N 38 TT8 "C2'" "C3'" SING N N 39 TT8 "C2'" "H2'" SING N N 40 TT8 "O2'" "HO2'" SING N N 41 TT8 "C3'" "O3'" SING N N 42 TT8 "C3'" "C4'" SING N N 43 TT8 "C3'" "H3'" SING N N 44 TT8 "O3'" "HO3'" SING N N 45 TT8 "C4'" "O4'" SING N N 46 TT8 "C4'" "C5'" SING N N 47 TT8 "C4'" "H4'" SING N N 48 TT8 "C5'" "H5'" SING N N 49 TT8 "C5'" "H5'A" SING N N 50 TT8 OXT H22 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TT8 SMILES ACDLabs 12.01 "O=C(O)C(N)CCSCC3OC(n2cnc1c(ncnc12)NC)C(O)C3O" TT8 InChI InChI 1.03 "InChI=1S/C15H22N6O5S/c1-17-12-9-13(19-5-18-12)21(6-20-9)14-11(23)10(22)8(26-14)4-27-3-2-7(16)15(24)25/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H,24,25)(H,17,18,19)/t7-,8+,10+,11+,14+/m0/s1" TT8 InChIKey InChI 1.03 GEJILRRXJVSBCM-TWBCTODHSA-N TT8 SMILES_CANONICAL CACTVS 3.370 "CNc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCC[C@H](N)C(O)=O)[C@@H](O)[C@H]3O" TT8 SMILES CACTVS 3.370 "CNc1ncnc2n(cnc12)[CH]3O[CH](CSCC[CH](N)C(O)=O)[CH](O)[CH]3O" TT8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CNc1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O" TT8 SMILES "OpenEye OEToolkits" 1.7.2 "CNc1c2c(ncn1)n(cn2)C3C(C(C(O3)CSCCC(C(=O)O)N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TT8 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-amino-4-[({(2S,3S,4R,5R)-3,4-dihydroxy-5-[6-(methylamino)-9H-purin-9-yl]tetrahydrofuran-2-yl}methyl)sulfanyl]butanoic acid (non-preferred name)" TT8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-2-azanyl-4-[[(2S,3S,4R,5R)-5-[6-(methylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TT8 "Create component" 2011-07-13 RCSB TT8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TT8 _pdbx_chem_comp_synonyms.name "S-(N6-Methyladenosyl)-L-homocysteine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##