data_TTI # _chem_comp.id TTI _chem_comp.name "2'-deoxy-5-telluroxouridine 5'-(dihydrogen phosphate)" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O8 P Te" _chem_comp.mon_nstd_parent_comp_id DU _chem_comp.pdbx_synonyms "5-Tellurium-deoxyuridine-5'-phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-12-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.782 _chem_comp.one_letter_code U _chem_comp.three_letter_code TTI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FA1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TTI O3P O3P O 0 1 N Y N 34.261 23.986 6.717 -5.560 -2.010 -1.195 O3P TTI 1 TTI N1 N1 N 0 1 N N N 35.179 28.961 3.592 0.604 0.702 -0.154 N1 TTI 2 TTI C2 C2 C 0 1 N N N 35.071 29.894 2.585 0.556 0.350 -1.452 C2 TTI 3 TTI O2 O2 O 0 1 N N N 35.907 30.762 2.381 -0.477 0.531 -2.066 O2 TTI 4 TTI N3 N3 N 0 1 N N N 33.935 29.781 1.824 1.596 -0.191 -2.097 N3 TTI 5 TTI C4 C4 C 0 1 N N N 32.920 28.855 1.966 2.785 -0.439 -1.528 C4 TTI 6 TTI O4 O4 O 0 1 N N N 31.953 28.885 1.203 3.680 -0.935 -2.191 O4 TTI 7 TTI C5 C5 C 0 1 N N N 33.096 27.910 3.045 3.008 -0.132 -0.175 C5 TTI 8 TTI C6 C6 C 0 1 N N N 34.203 28.007 3.794 1.854 0.483 0.594 C6 TTI 9 TTI "C1'" "C1'" C 0 1 N N R 36.376 29.000 4.448 -0.563 1.296 0.502 "C1'" TTI 10 TTI "C2'" "C2'" C 0 1 N N N 36.287 29.993 5.608 -0.940 2.632 -0.178 "C2'" TTI 11 TTI "C3'" "C3'" C 0 1 N N S 35.861 29.117 6.770 -2.484 2.646 -0.148 "C3'" TTI 12 TTI "O3'" "O3'" O 0 1 N N N 36.317 29.643 8.019 -2.960 3.759 0.611 "O3'" TTI 13 TTI "C4'" "C4'" C 0 1 N N R 36.570 27.807 6.461 -2.859 1.317 0.546 "C4'" TTI 14 TTI "O4'" "O4'" O 0 1 N N N 36.538 27.705 5.021 -1.723 0.453 0.326 "O4'" TTI 15 TTI "C5'" "C5'" C 0 1 N N N 35.939 26.581 7.081 -4.115 0.719 -0.091 "C5'" TTI 16 TTI "O5'" "O5'" O 0 1 N N N 34.555 26.504 6.731 -4.510 -0.445 0.638 "O5'" TTI 17 TTI P P P 0 1 N N N 33.622 25.344 7.306 -5.796 -1.330 0.245 P TTI 18 TTI O1P O1P O 0 1 N N N 32.272 25.512 6.712 -6.994 -0.463 0.190 O1P TTI 19 TTI O2P O2P O 0 1 N N N 33.768 25.305 8.783 -6.015 -2.479 1.352 O2P TTI 20 TTI TE5 TE5 TE 0 0 N N N 31.594 26.423 3.371 4.703 -0.476 0.665 TE5 TTI 21 TTI HO3P HO3P H 0 0 N N N 34.387 24.075 5.780 -4.790 -2.594 -1.233 HO3P TTI 22 TTI HN3 HN3 H 0 1 N N N 33.830 30.444 1.083 1.483 -0.418 -3.033 HN3 TTI 23 TTI H6 H6 H 0 1 N N N 34.717 27.042 3.670 2.188 1.446 0.982 H6 TTI 24 TTI H6A H6A H 0 1 N N N 33.789 28.313 4.766 1.630 -0.160 1.445 H6A TTI 25 TTI "H1'" "H1'" H 0 1 N N N 37.213 29.316 3.808 -0.364 1.451 1.562 "H1'" TTI 26 TTI "H2'" "H2'" H 0 1 N N N 37.253 30.483 5.800 -0.539 3.474 0.387 "H2'" TTI 27 TTI "H2'A" "H2'A" H 0 0 N N N 35.591 30.823 5.414 -0.577 2.653 -1.205 "H2'A" TTI 28 TTI "H3'" "H3'" H 0 1 N N N 34.769 29.030 6.868 -2.886 2.676 -1.161 "H3'" TTI 29 TTI "HO3'" "HO3'" H 0 0 N Y N 36.418 28.934 8.644 -2.702 4.619 0.253 "HO3'" TTI 30 TTI "H4'" "H4'" H 0 1 N N N 37.582 27.830 6.890 -3.015 1.477 1.613 "H4'" TTI 31 TTI "H5'" "H5'" H 0 1 N N N 36.456 25.683 6.712 -4.919 1.454 -0.067 "H5'" TTI 32 TTI "H5'A" "H5'A" H 0 0 N N N 36.028 26.647 8.175 -3.902 0.446 -1.125 "H5'A" TTI 33 TTI HO2P HO2P H 0 0 N N N 34.690 25.297 9.010 -6.775 -3.052 1.179 HO2P TTI 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TTI O3P P SING N N 1 TTI O3P HO3P SING N N 2 TTI C2 N1 SING N N 3 TTI N1 C6 SING N N 4 TTI N1 "C1'" SING N N 5 TTI N3 C2 SING N N 6 TTI O2 C2 DOUB N N 7 TTI N3 C4 SING N N 8 TTI N3 HN3 SING N N 9 TTI O4 C4 DOUB N N 10 TTI C4 C5 SING N N 11 TTI C5 TE5 DOUB N N 12 TTI C5 C6 SING N N 13 TTI C6 H6 SING N N 14 TTI C6 H6A SING N N 15 TTI "C1'" "O4'" SING N N 16 TTI "C1'" "C2'" SING N N 17 TTI "C1'" "H1'" SING N N 18 TTI "C2'" "C3'" SING N N 19 TTI "C2'" "H2'" SING N N 20 TTI "C2'" "H2'A" SING N N 21 TTI "C4'" "C3'" SING N N 22 TTI "C3'" "O3'" SING N N 23 TTI "C3'" "H3'" SING N N 24 TTI "O3'" "HO3'" SING N N 25 TTI "O4'" "C4'" SING N N 26 TTI "C4'" "C5'" SING N N 27 TTI "C4'" "H4'" SING N N 28 TTI "O5'" "C5'" SING N N 29 TTI "C5'" "H5'" SING N N 30 TTI "C5'" "H5'A" SING N N 31 TTI "O5'" P SING N N 32 TTI O1P P DOUB N N 33 TTI P O2P SING N N 34 TTI O2P HO2P SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TTI SMILES ACDLabs 10.04 "[Te]=C2C(=O)NC(=O)N(C1OC(C(O)C1)COP(=O)(O)O)C2" TTI SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2CC(=[Te])C(=O)NC2=O" TTI SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2CC(=[Te])C(=O)NC2=O" TTI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2CC(=[Te])C(=O)NC2=O)COP(=O)(O)O)O" TTI SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2CC(=[Te])C(=O)NC2=O)COP(=O)(O)O)O" TTI InChI InChI 1.03 "InChI=1S/C9H13N2O8PTe/c12-4-1-7(19-5(4)3-18-20(15,16)17)11-2-6(21)8(13)10-9(11)14/h4-5,7,12H,1-3H2,(H,10,13,14)(H2,15,16,17)/t4-,5+,7+/m0/s1" TTI InChIKey InChI 1.03 JBISBBUKLAQYGW-HBPOCXIASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TTI "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5-telluroxouridine 5'-(dihydrogen phosphate)" TTI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2,4-dioxo-5-tellanylidene-1,3-diazinan-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TTI "Create component" 2008-12-03 RCSB TTI "Modify descriptor" 2011-06-04 RCSB TTI "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TTI _pdbx_chem_comp_synonyms.name "5-Tellurium-deoxyuridine-5'-phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##