data_TTW # _chem_comp.id TTW _chem_comp.name "5'-O-[hydroxy{[hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N3 O13 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-12-19 _chem_comp.pdbx_modified_date 2018-08-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 481.184 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TTW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YYD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TTW O4 O1 O 0 1 N N N -32.571 -2.379 -15.308 -7.226 -2.803 1.463 O4 TTW 1 TTW C4 C1 C 0 1 N N N -31.507 -2.583 -14.726 -6.488 -2.072 0.827 C4 TTW 2 TTW N3 N1 N 0 1 N N N -30.379 -2.761 -15.438 -5.789 -1.102 1.449 N3 TTW 3 TTW C2 C2 C 0 1 N N N -29.229 -2.997 -14.811 -4.974 -0.295 0.745 C2 TTW 4 TTW O2 O2 O 0 1 N N N -28.238 -3.126 -15.507 -4.350 0.576 1.319 O2 TTW 5 TTW C5 C3 C 0 1 N N N -31.481 -2.629 -13.229 -6.351 -2.239 -0.572 C5 TTW 6 TTW C5M C4 C 0 1 N N N -32.753 -2.424 -12.394 -7.117 -3.320 -1.291 C5M TTW 7 TTW C6 C5 C 0 1 N N N -30.251 -2.876 -12.637 -5.526 -1.416 -1.254 C6 TTW 8 TTW N1 N2 N 0 1 N N N -29.131 -3.051 -13.380 -4.838 -0.440 -0.586 N1 TTW 9 TTW "C1'" C6 C 0 1 N N R -27.821 -3.250 -12.745 -3.943 0.453 -1.326 "C1'" TTW 10 TTW "O4'" O3 O 0 1 N N N -27.997 -4.112 -11.628 -2.639 0.449 -0.720 "O4'" TTW 11 TTW "C2'" C7 C 0 1 N N N -27.265 -1.941 -12.149 -4.473 1.898 -1.261 "C2'" TTW 12 TTW "C3'" C8 C 0 1 N N S -27.658 -1.955 -10.659 -3.318 2.698 -0.612 "C3'" TTW 13 TTW "O3'" O4 O 0 1 N N N -26.778 -1.155 -9.820 -3.151 3.964 -1.253 "O3'" TTW 14 TTW "C4'" C9 C 0 1 N N R -27.598 -3.433 -10.383 -2.098 1.779 -0.875 "C4'" TTW 15 TTW "C5'" C10 C 0 1 N N N -28.499 -3.844 -9.194 -0.997 2.036 0.155 "C5'" TTW 16 TTW "O5'" O5 O 0 1 N N N -29.838 -3.456 -9.561 0.119 1.186 -0.117 "O5'" TTW 17 TTW PA P1 P 0 1 N N N -30.954 -2.873 -8.512 1.461 1.189 0.771 PA TTW 18 TTW O1A O6 O 0 1 N N N -32.295 -3.286 -9.034 2.008 2.563 0.834 O1A TTW 19 TTW O2A O7 O 0 1 N N N -30.785 -3.456 -7.125 1.121 0.678 2.259 O2A TTW 20 TTW O3A O8 O 0 1 N N N -30.807 -1.283 -8.490 2.549 0.208 0.103 O3A TTW 21 TTW PB P2 P 0 1 N N N -29.633 -0.387 -7.754 4.134 -0.001 0.295 PB TTW 22 TTW O1B O9 O 0 1 N N N -28.727 0.268 -8.784 4.414 -0.384 1.697 O1B TTW 23 TTW O2B O10 O 0 1 N N N -28.820 -1.246 -6.858 4.902 1.371 -0.050 O2B TTW 24 TTW N3B N3 N 0 1 N N N -30.473 0.749 -6.959 4.668 -1.219 -0.737 N3B TTW 25 TTW PG P3 P 0 1 N N N -31.217 0.446 -5.485 6.324 -1.470 -0.566 PG TTW 26 TTW O1G O11 O 0 1 N N N -30.356 1.079 -4.474 6.795 -2.639 -1.568 O1G TTW 27 TTW O2G O12 O 0 1 N N N -31.184 -1.056 -5.321 7.112 -0.111 -0.919 O2G TTW 28 TTW O3G O13 O 0 1 N N N -32.552 1.076 -5.399 6.622 -1.865 0.828 O3G TTW 29 TTW H1 H1 H 0 1 N N N -30.405 -2.716 -16.437 -5.875 -0.983 2.408 H1 TTW 30 TTW H2 H2 H 0 1 N N N -32.506 -2.498 -11.325 -7.723 -3.873 -0.575 H2 TTW 31 TTW H3 H3 H 0 1 N N N -33.174 -1.430 -12.605 -7.764 -2.868 -2.043 H3 TTW 32 TTW H4 H4 H 0 1 N N N -33.491 -3.197 -12.654 -6.416 -4.000 -1.776 H4 TTW 33 TTW H5 H5 H 0 1 N N N -30.184 -2.930 -11.560 -5.409 -1.528 -2.322 H5 TTW 34 TTW H6 H6 H 0 1 N N N -27.100 -3.666 -13.464 -3.872 0.130 -2.364 H6 TTW 35 TTW H7 H7 H 0 1 N N N -26.171 -1.906 -12.256 -4.681 2.273 -2.264 H7 TTW 36 TTW H8 H8 H 0 1 N N N -27.710 -1.071 -12.654 -5.368 1.949 -0.641 H8 TTW 37 TTW H9 H9 H 0 1 N N N -28.696 -1.606 -10.560 -3.486 2.825 0.458 H9 TTW 38 TTW H10 H10 H 0 1 N N N -27.294 -0.532 -9.323 -3.924 4.541 -1.193 H10 TTW 39 TTW H11 H11 H 0 1 N N N -26.561 -3.706 -10.139 -1.720 1.924 -1.887 H11 TTW 40 TTW H12 H12 H 0 1 N N N -28.446 -4.931 -9.032 -0.682 3.078 0.098 H12 TTW 41 TTW H13 H13 H 0 1 N N N -28.186 -3.321 -8.278 -1.378 1.826 1.155 H13 TTW 42 TTW H14 H14 H 0 1 N N N -31.561 -3.952 -6.893 0.758 -0.217 2.295 H14 TTW 43 TTW H15 H15 H 0 1 N N N -27.908 -1.203 -7.119 4.764 1.683 -0.955 H15 TTW 44 TTW H16 H16 H 0 1 N N N -29.838 1.505 -6.801 4.155 -2.074 -0.584 H16 TTW 45 TTW H17 H17 H 0 1 N N N -30.851 1.740 -4.004 7.740 -2.837 -1.523 H17 TTW 46 TTW H18 H18 H 0 1 N N N -32.066 -1.379 -5.181 6.963 0.208 -1.820 H18 TTW 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TTW O2 C2 DOUB N N 1 TTW N3 C2 SING N N 2 TTW N3 C4 SING N N 3 TTW O4 C4 DOUB N N 4 TTW C2 N1 SING N N 5 TTW C4 C5 SING N N 6 TTW N1 "C1'" SING N N 7 TTW N1 C6 SING N N 8 TTW C5 C6 DOUB N N 9 TTW C5 C5M SING N N 10 TTW "C1'" "C2'" SING N N 11 TTW "C1'" "O4'" SING N N 12 TTW "C2'" "C3'" SING N N 13 TTW "O4'" "C4'" SING N N 14 TTW "C3'" "C4'" SING N N 15 TTW "C3'" "O3'" SING N N 16 TTW "C4'" "C5'" SING N N 17 TTW "O5'" "C5'" SING N N 18 TTW "O5'" PA SING N N 19 TTW O1A PA DOUB N N 20 TTW O1B PB DOUB N N 21 TTW PA O3A SING N N 22 TTW PA O2A SING N N 23 TTW O3A PB SING N N 24 TTW PB N3B SING N N 25 TTW PB O2B SING N N 26 TTW N3B PG SING N N 27 TTW PG O3G DOUB N N 28 TTW PG O2G SING N N 29 TTW PG O1G SING N N 30 TTW N3 H1 SING N N 31 TTW C5M H2 SING N N 32 TTW C5M H3 SING N N 33 TTW C5M H4 SING N N 34 TTW C6 H5 SING N N 35 TTW "C1'" H6 SING N N 36 TTW "C2'" H7 SING N N 37 TTW "C2'" H8 SING N N 38 TTW "C3'" H9 SING N N 39 TTW "O3'" H10 SING N N 40 TTW "C4'" H11 SING N N 41 TTW "C5'" H12 SING N N 42 TTW "C5'" H13 SING N N 43 TTW O2A H14 SING N N 44 TTW O2B H15 SING N N 45 TTW N3B H16 SING N N 46 TTW O1G H17 SING N N 47 TTW O2G H18 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TTW SMILES ACDLabs 12.01 "O=C1C(=CN(C(N1)=O)C2CC(C(O2)COP(OP(NP(=O)(O)O)(O)=O)(O)=O)O)C" TTW InChI InChI 1.03 "InChI=1S/C10H18N3O13P3/c1-5-3-13(10(16)11-9(5)15)8-2-6(14)7(25-8)4-24-29(22,23)26-28(20,21)12-27(17,18)19/h3,6-8,14H,2,4H2,1H3,(H,22,23)(H,11,15,16)(H4,12,17,18,19,20,21)/t6-,7+,8+/m0/s1" TTW InChIKey InChI 1.03 RTOWUXJWTDSUGC-XLPZGREQSA-N TTW SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O" TTW SMILES CACTVS 3.385 "CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)N[P](O)(O)=O)O2)C(=O)NC1=O" TTW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O" TTW SMILES "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(NP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TTW "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]thymidine" TTW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[[[(2~{R},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]amino]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TTW "Create component" 2017-12-19 PDBJ TTW "Initial release" 2018-09-05 RCSB #