data_TV0 # _chem_comp.id TV0 _chem_comp.name "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H13 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-29 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 275.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TV0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8J5H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TV0 N1 N1 N 0 1 N N N N N N 16.087 14.123 2.579 -1.458 0.318 -0.396 N1 TV0 1 TV0 N3 N2 N 0 1 N N N N N N 18.134 12.782 2.676 -3.172 -0.769 0.751 N3 TV0 2 TV0 C4 C1 C 0 1 N N R N N N 15.081 14.847 3.380 -0.026 0.581 -0.562 C4 TV0 3 TV0 C5 C2 C 0 1 N N N N N N 11.331 15.077 4.288 3.615 -0.628 -0.901 C5 TV0 4 TV0 C6 C3 C 0 1 N N N N N N 16.050 13.970 1.185 -2.358 0.910 -1.231 C6 TV0 5 TV0 C7 C4 C 0 1 N N N N N N 17.089 13.515 3.275 -1.877 -0.512 0.578 C7 TV0 6 TV0 C8 C5 C 0 1 N N N N N N 17.068 13.234 0.560 -3.678 0.654 -1.070 C8 TV0 7 TV0 C1 C6 C 0 1 N N S N N N 12.455 15.137 3.297 2.372 -0.659 -0.009 C1 TV0 8 TV0 C2 C7 C 0 1 N N S N N N 13.255 16.438 3.362 2.141 0.722 0.639 C2 TV0 9 TV0 C3 C8 C 0 1 N N R N N N 14.609 16.123 2.726 0.628 0.954 0.794 C3 TV0 10 TV0 C9 C9 C 0 1 N N N N N N 18.095 12.657 1.353 -4.084 -0.220 -0.041 C9 TV0 11 TV0 N2 N3 N 0 1 N N N N N N 19.157 11.893 0.745 -5.419 -0.496 0.145 N2 TV0 12 TV0 O1 O1 O 0 1 N N N N N N 13.448 16.758 4.711 2.701 1.742 -0.192 O1 TV0 13 TV0 O2 O2 O 0 1 N N N N N N 15.514 17.152 2.982 0.374 2.328 1.096 O2 TV0 14 TV0 O3 O3 O 0 1 N N N N N N 11.926 14.971 1.951 2.503 -1.666 0.996 O3 TV0 15 TV0 O4 O4 O 0 1 N N N N N N 10.239 15.803 3.801 4.758 -0.287 -0.114 O4 TV0 16 TV0 O5 O5 O 0 1 N N N N N N 17.107 13.644 4.615 -1.057 -1.037 1.313 O5 TV0 17 TV0 S1 S1 S 0 1 N N N N N N 13.635 13.776 3.692 0.871 -0.954 -1.016 S1 TV0 18 TV0 H1 H1 H 0 1 N N N N N N 15.497 15.082 4.371 0.139 1.361 -1.305 H1 TV0 19 TV0 H2 H2 H 0 1 N N N N N N 11.035 14.029 4.443 3.763 -1.610 -1.351 H2 TV0 20 TV0 H3 H3 H 0 1 N N N N N N 11.662 15.510 5.244 3.480 0.115 -1.687 H3 TV0 21 TV0 H4 H4 H 0 1 N N N N N N 15.253 14.410 0.604 -2.021 1.576 -2.012 H4 TV0 22 TV0 H5 H5 H 0 1 N N N N N N 17.070 13.108 -0.513 -4.408 1.113 -1.720 H5 TV0 23 TV0 H6 H6 H 0 1 N N N N N N 12.742 17.237 2.806 2.615 0.749 1.620 H6 TV0 24 TV0 H7 H7 H 0 1 N N N N N N 14.479 15.961 1.646 0.232 0.319 1.586 H7 TV0 25 TV0 H8 H8 H 0 1 N N N N N N 19.873 11.490 1.315 -6.083 -0.090 -0.433 H8 TV0 26 TV0 H9 H9 H 0 1 N N N N N N 19.178 11.767 -0.247 -5.695 -1.098 0.854 H9 TV0 27 TV0 H10 H10 H 0 1 N N N N N N 12.610 16.955 5.113 2.591 2.637 0.157 H10 TV0 28 TV0 H11 H11 H 0 1 N N N N N N 16.351 16.945 2.582 0.771 2.628 1.925 H11 TV0 29 TV0 H12 H12 H 0 1 N N N N N N 11.427 14.164 1.904 2.650 -2.555 0.645 H12 TV0 30 TV0 H13 H13 H 0 1 N N N N N N 9.527 15.765 4.429 5.583 -0.249 -0.615 H13 TV0 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TV0 C8 C6 DOUB N N 1 TV0 C8 C9 SING N N 2 TV0 N2 C9 SING N N 3 TV0 C6 N1 SING N N 4 TV0 C9 N3 DOUB N N 5 TV0 O3 C1 SING N N 6 TV0 N1 C7 SING N N 7 TV0 N1 C4 SING N N 8 TV0 N3 C7 SING N N 9 TV0 C3 O2 SING N N 10 TV0 C3 C2 SING N N 11 TV0 C3 C4 SING N N 12 TV0 C7 O5 DOUB N N 13 TV0 C1 C2 SING N N 14 TV0 C1 S1 SING N N 15 TV0 C1 C5 SING N N 16 TV0 C2 O1 SING N N 17 TV0 C4 S1 SING N N 18 TV0 O4 C5 SING N N 19 TV0 C4 H1 SING N N 20 TV0 C5 H2 SING N N 21 TV0 C5 H3 SING N N 22 TV0 C6 H4 SING N N 23 TV0 C8 H5 SING N N 24 TV0 C2 H6 SING N N 25 TV0 C3 H7 SING N N 26 TV0 N2 H8 SING N N 27 TV0 N2 H9 SING N N 28 TV0 O1 H10 SING N N 29 TV0 O2 H11 SING N N 30 TV0 O3 H12 SING N N 31 TV0 O4 H13 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TV0 InChI InChI 1.06 "InChI=1S/C9H13N3O5S/c10-4-1-2-12(8(16)11-4)7-5(14)6(15)9(17,3-13)18-7/h1-2,5-7,13-15,17H,3H2,(H2,10,11,16)/t5-,6+,7-,9+/m1/s1" TV0 InChIKey InChI 1.06 NCKQSFKRXULRQX-AYHNYZOXSA-N TV0 SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)[C@@H]2S[C@@](O)(CO)[C@@H](O)[C@H]2O" TV0 SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)[CH]2S[C](O)(CO)[CH](O)[CH]2O" TV0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@@](S2)(CO)O)O)O" TV0 SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C2C(C(C(S2)(CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id TV0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TV0 "Create component" 2023-04-29 PDBJ TV0 "Initial release" 2024-04-24 RCSB #