data_TXB # _chem_comp.id TXB _chem_comp.name 4-deoxy-4-thio-alpha-D-xylopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2S,3R,4R,5R)-5-sulfanyloxane-2,3,4-triol; THIOXYLOPYRANOSE; 4-deoxy-4-thio-alpha-D-xylose; 4-deoxy-4-thio-D-xylose; 4-deoxy-4-thio-xylose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-26 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 166.195 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TXB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5AE6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TXB "(2S,3R,4R,5R)-5-sulfanyloxane-2,3,4-triol" PDB ? 2 TXB THIOXYLOPYRANOSE PDB ? 3 TXB 4-deoxy-4-thio-alpha-D-xylose PDB ? 4 TXB 4-deoxy-4-thio-D-xylose PDB ? 5 TXB 4-deoxy-4-thio-xylose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TXB S4 S4 S 0 1 N N N 33.126 -84.046 -16.017 2.691 -0.101 -0.320 S4 TXB 1 TXB C4 C4 C 0 1 N N R 32.654 -84.569 -14.374 1.058 -0.223 0.461 C4 TXB 2 TXB C5 C5 C 0 1 N N N 33.894 -84.914 -13.574 0.465 -1.608 0.193 C5 TXB 3 TXB O5 O5 O 0 1 N N N 33.539 -85.261 -12.193 -0.845 -1.681 0.760 O5 TXB 4 TXB C1 C1 C 0 1 N N S 32.644 -86.399 -12.057 -1.770 -0.738 0.216 C1 TXB 5 TXB O1 O1 O 0 1 N Y N 33.324 -87.635 -12.379 -1.886 -0.944 -1.194 O1 TXB 6 TXB C2 C2 C 0 1 N N R 31.394 -86.228 -12.943 -1.266 0.682 0.484 C2 TXB 7 TXB O2 O2 O 0 1 N N N 30.647 -87.464 -12.951 -2.160 1.626 -0.109 O2 TXB 8 TXB C3 C3 C 0 1 N N R 31.765 -85.813 -14.393 0.129 0.845 -0.125 C3 TXB 9 TXB O3 O3 O 0 1 N N N 30.569 -85.532 -15.159 0.638 2.144 0.184 O3 TXB 10 TXB HS4 HS4 H 0 1 N N N 31.973 -83.792 -16.561 3.386 -1.085 0.277 HS4 TXB 11 TXB H4 H4 H 0 1 N N N 32.120 -83.728 -13.907 1.157 -0.070 1.536 H4 TXB 12 TXB H51 H51C H 0 1 N N N 34.400 -85.771 -14.043 0.405 -1.776 -0.882 H51 TXB 13 TXB H52 H52C H 0 1 N N N 34.572 -84.047 -13.566 1.100 -2.369 0.646 H52 TXB 14 TXB H3 H3 H 0 1 N N N 32.322 -86.639 -14.860 0.071 0.722 -1.207 H3 TXB 15 TXB H1 H1 H 0 1 N N N 32.302 -86.450 -11.013 -2.745 -0.873 0.684 H1 TXB 16 TXB HO1 HA H 0 1 N Y N 32.721 -88.363 -12.283 -2.201 -1.825 -1.438 HO1 TXB 17 TXB H2 H2 H 0 1 N N N 30.774 -85.429 -12.509 -1.217 0.854 1.560 H2 TXB 18 TXB HO2 HB H 0 1 N Y N 29.875 -87.364 -13.496 -3.065 1.577 0.227 HO2 TXB 19 TXB HO3 HC H 0 1 N Y N 30.013 -86.302 -15.174 1.523 2.313 -0.167 HO3 TXB 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TXB S4 C4 SING N N 1 TXB C4 C5 SING N N 2 TXB C4 C3 SING N N 3 TXB C5 O5 SING N N 4 TXB O5 C1 SING N N 5 TXB C1 O1 SING N N 6 TXB C1 C2 SING N N 7 TXB C2 O2 SING N N 8 TXB C2 C3 SING N N 9 TXB C3 O3 SING N N 10 TXB S4 HS4 SING N N 11 TXB C4 H4 SING N N 12 TXB C5 H51 SING N N 13 TXB C5 H52 SING N N 14 TXB C3 H3 SING N N 15 TXB C1 H1 SING N N 16 TXB O1 HO1 SING N N 17 TXB C2 H2 SING N N 18 TXB O2 HO2 SING N N 19 TXB O3 HO3 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TXB InChI InChI 1.03 "InChI=1S/C5H10O4S/c6-3-2(10)1-9-5(8)4(3)7/h2-8,10H,1H2/t2-,3+,4-,5+/m1/s1" TXB InChIKey InChI 1.03 MFDZOCXKSSGEBR-LECHCGJUSA-N TXB SMILES_CANONICAL CACTVS 3.385 "O[C@H]1OC[C@@H](S)[C@H](O)[C@H]1O" TXB SMILES CACTVS 3.385 "O[CH]1OC[CH](S)[CH](O)[CH]1O" TXB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)S" TXB SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)O)O)O)S" # _pdbx_chem_comp_identifier.comp_id TXB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "(2S,3R,4R,5R)-5-sulfanyloxane-2,3,4-triol" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TXB "CARBOHYDRATE ISOMER" D PDB ? TXB "CARBOHYDRATE RING" pyranose PDB ? TXB "CARBOHYDRATE ANOMER" alpha PDB ? TXB "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TXB "Create component" 2015-08-26 EBI TXB "Initial release" 2016-09-21 RCSB TXB "Other modification" 2020-07-03 RCSB TXB "Modify name" 2020-07-17 RCSB TXB "Modify synonyms" 2020-07-17 RCSB TXB "Modify internal type" 2020-07-17 RCSB TXB "Modify linking type" 2020-07-17 RCSB TXB "Modify atom id" 2020-07-17 RCSB TXB "Modify component atom id" 2020-07-17 RCSB TXB "Modify leaving atom flag" 2020-07-17 RCSB ##