data_TXE # _chem_comp.id TXE _chem_comp.name ;[[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanidyl-ph osphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H31 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "1,2,3,4-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-10-31 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 667.457 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TXE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CAZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TXE O3 O3 O 0 1 N N N 62.390 -17.948 39.840 0.284 0.626 -1.472 O3 TXE 1 TXE PA PA P 0 1 N N N 62.487 -16.381 39.500 -0.811 -0.109 -2.396 PA TXE 2 TXE PN PN P 0 1 N N N 62.171 -18.965 38.613 1.380 1.775 -1.736 PN TXE 3 TXE C1B C1B C 0 1 N N R 67.070 -18.556 35.936 6.368 0.926 1.150 C1B TXE 4 TXE C2B C2B C 0 1 N N R 66.776 -19.398 34.705 6.964 2.277 0.678 C2B TXE 5 TXE C3B C3B C 0 1 N N S 65.417 -20.035 34.961 5.724 3.203 0.696 C3B TXE 6 TXE C4B C4B C 0 1 N N R 64.880 -19.275 36.160 4.528 2.233 0.632 C4B TXE 7 TXE C5B C5B C 0 1 N N N 63.964 -20.109 37.043 3.673 2.542 -0.599 C5B TXE 8 TXE O2B O2B O 0 1 N N N 66.697 -18.512 33.590 7.960 2.741 1.592 O2B TXE 9 TXE O3B O3B O 0 1 N N N 64.532 -19.903 33.839 5.686 3.965 1.904 O3B TXE 10 TXE O4B O4B O 0 1 N N N 66.049 -18.893 36.879 5.062 0.902 0.535 O4B TXE 11 TXE O5B O5B O 0 1 N N N 63.680 -19.367 38.225 2.506 1.717 -0.587 O5B TXE 12 TXE "C1'" "C1'" C 0 1 N N R 62.463 -13.505 43.513 -5.802 -1.242 0.385 "C1'" TXE 13 TXE N1A N1A N 0 1 Y N N 60.121 -8.946 42.898 -9.942 0.610 2.918 N1A TXE 14 TXE N1N N1N N 0 1 N N N 68.387 -18.882 36.471 7.184 -0.193 0.671 N1N TXE 15 TXE O1N O1N O 0 1 N N N 61.455 -18.209 37.381 0.663 3.216 -1.712 O1N TXE 16 TXE O1P O1P O 0 1 N N N 61.049 -15.856 38.989 -0.093 -1.251 -3.275 O1P TXE 17 TXE "C2'" "C2'" C 0 1 N N R 62.207 -14.935 43.960 -6.398 -2.004 -0.826 "C2'" TXE 18 TXE "O2'" "O2'" O 0 1 N N N 61.654 -15.039 45.276 -7.394 -2.936 -0.401 "O2'" TXE 19 TXE C2A C2A C 0 1 Y N N 61.249 -9.246 43.569 -9.491 -0.630 2.868 C2A TXE 20 TXE C2N C2N C 0 1 N N N 69.555 -18.334 35.764 7.902 -1.055 1.622 C2N TXE 21 TXE O2N O2N O 0 1 N N N 61.315 -20.244 39.088 2.011 1.561 -3.058 O2N TXE 22 TXE O2P O2P O 0 1 N N N 63.610 -16.126 38.370 -1.441 0.882 -3.297 O2P TXE 23 TXE "C3'" "C3'" C 0 1 N N S 63.599 -15.538 43.905 -5.157 -2.740 -1.388 "C3'" TXE 24 TXE "O3'" "O3'" O 0 1 N N N 64.352 -15.239 45.095 -5.119 -4.089 -0.918 "O3'" TXE 25 TXE N3A N3A N 0 1 Y N N 61.742 -10.491 43.645 -8.420 -0.966 2.181 N3A TXE 26 TXE C3N C3N C 0 1 N N R 70.554 -17.875 36.840 7.704 -2.510 1.172 C3N TXE 27 TXE "C4'" "C4'" C 0 1 N N R 64.227 -14.850 42.705 -3.961 -1.942 -0.832 "C4'" TXE 28 TXE "O4'" "O4'" O 0 1 N N N 63.470 -13.648 42.508 -4.495 -0.840 -0.079 "O4'" TXE 29 TXE C4A C4A C 0 1 Y N N 61.085 -11.493 43.021 -7.739 -0.051 1.498 C4A TXE 30 TXE C4N C4N C 0 1 N N N 70.812 -19.011 37.827 8.295 -2.671 -0.230 C4N TXE 31 TXE "C5'" "C5'" C 0 1 N N N 64.182 -15.705 41.443 -3.105 -1.416 -1.986 "C5'" TXE 32 TXE "O5'" "O5'" O 0 1 N N N 62.860 -15.667 40.900 -1.938 -0.779 -1.462 "O5'" TXE 33 TXE C5A C5A C 0 1 Y N N 59.839 -11.195 42.286 -8.178 1.284 1.519 C5A TXE 34 TXE C5N C5N C 0 1 N N N 69.464 -19.412 38.354 7.792 -1.584 -1.137 C5N TXE 35 TXE C6A C6A C 0 1 Y N N 59.395 -9.882 42.252 -9.326 1.593 2.267 C6A TXE 36 TXE N6A N6A N 0 1 N N N 58.265 -9.530 41.592 -9.806 2.889 2.325 N6A TXE 37 TXE C6N C6N C 0 1 N N N 68.474 -19.602 37.498 7.287 -0.461 -0.688 C6N TXE 38 TXE N7A N7A N 0 1 Y N N 59.412 -12.373 41.789 -7.318 1.999 0.754 N7A TXE 39 TXE C7N C7N C 0 1 N N N 71.887 -17.337 36.350 8.411 -3.435 2.129 C7N TXE 40 TXE N7N N7N N 0 1 N N N 71.879 -16.228 35.614 8.372 -4.768 1.929 N7N TXE 41 TXE O7N O7N O 0 1 N N N 72.934 -17.907 36.636 9.014 -2.981 3.078 O7N TXE 42 TXE C8A C8A C 0 1 Y N N 60.301 -13.333 42.168 -6.402 1.207 0.277 C8A TXE 43 TXE N9A N9A N 0 1 Y N N 61.294 -12.807 42.915 -6.618 -0.068 0.708 N9A TXE 44 TXE "H1'A" "H1'A" H 0 0 N N N 67.019 -17.490 35.671 6.282 0.903 2.236 "H1'A" TXE 45 TXE "H2'A" "H2'A" H 0 0 N N N 67.548 -20.170 34.568 7.372 2.192 -0.329 "H2'A" TXE 46 TXE "H3'A" "H3'A" H 0 0 N N N 65.553 -21.094 35.227 5.727 3.862 -0.172 "H3'A" TXE 47 TXE "H4'A" "H4'A" H 0 0 N N N 64.334 -18.386 35.811 3.925 2.328 1.535 "H4'A" TXE 48 TXE "H5'A" "H5'A" H 0 0 N N N 63.028 -20.326 36.507 3.377 3.591 -0.582 "H5'A" TXE 49 TXE "H5'B" "H5'B" H 0 0 N N N 64.462 -21.053 37.308 4.251 2.342 -1.501 "H5'B" TXE 50 TXE "H2'B" "H2'B" H 0 0 N N N 66.513 -19.010 32.802 8.363 3.583 1.340 "H2'B" TXE 51 TXE "H3'B" "H3'B" H 0 0 N N N 63.699 -20.313 34.042 6.446 4.550 2.024 "H3'B" TXE 52 TXE "H1'" "H1'" H 0 1 N N N 62.847 -12.923 44.363 -5.717 -1.900 1.250 "H1'" TXE 53 TXE "H2'" "H2'" H 0 1 N N N 61.560 -15.438 43.226 -6.805 -1.310 -1.561 "H2'" TXE 54 TXE "HO2'" "HO2'" H 0 0 N N N 61.519 -15.954 45.492 -7.796 -3.438 -1.123 "HO2'" TXE 55 TXE H2A H2A H 0 1 N N N 61.780 -8.449 44.068 -10.021 -1.398 3.412 H2A TXE 56 TXE H2N H2N H 0 1 N N N 70.011 -19.109 35.130 8.963 -0.807 1.616 H2N TXE 57 TXE H2NA H2NA H 0 0 N N N 69.253 -17.480 35.140 7.495 -0.919 2.624 H2NA TXE 58 TXE "H3'" "H3'" H 0 1 N N N 63.537 -16.622 43.732 -5.160 -2.716 -2.477 "H3'" TXE 59 TXE "HO3'" "HO3'" H 0 0 N N N 65.216 -15.629 45.030 -5.880 -4.621 -1.189 "HO3'" TXE 60 TXE H3N H3N H 0 1 N N N 70.066 -17.065 37.403 6.640 -2.744 1.150 H3N TXE 61 TXE "H4'" "H4'" H 0 1 N N N 65.275 -14.607 42.937 -3.360 -2.579 -0.183 "H4'" TXE 62 TXE H4N H4N H 0 1 N N N 71.291 -19.860 37.317 9.382 -2.617 -0.172 H4N TXE 63 TXE H4NA H4NA H 0 0 N N N 71.457 -18.665 38.648 8.005 -3.641 -0.635 H4NA TXE 64 TXE "H5'" "H5'" H 0 1 N N N 64.895 -15.310 40.705 -2.808 -2.247 -2.626 "H5'" TXE 65 TXE "H5'C" "H5'C" H 0 0 N N N 64.449 -16.743 41.691 -3.682 -0.697 -2.568 "H5'C" TXE 66 TXE H5N H5N H 0 1 N N N 69.306 -19.543 39.414 7.845 -1.736 -2.204 H5N TXE 67 TXE HN6A HN6A H 0 0 N N N 58.117 -8.545 41.685 -10.601 3.090 2.844 HN6A TXE 68 TXE HN6B HN6B H 0 0 N N N 58.358 -9.763 40.624 -9.349 3.598 1.845 HN6B TXE 69 TXE H6N H6N H 0 1 N N N 67.742 -20.374 37.681 6.946 0.280 -1.397 H6N TXE 70 TXE HN7N HN7N H 0 0 N N N 72.740 -15.842 35.282 7.889 -5.131 1.170 HN7N TXE 71 TXE HN7A HN7A H 0 0 N N N 71.012 -15.781 35.393 8.827 -5.363 2.545 HN7A TXE 72 TXE H8A H8A H 0 1 N N N 60.222 -14.378 41.905 -5.590 1.515 -0.366 H8A TXE 73 TXE H1N H1N H 0 1 N N N 60.650 -18.660 37.157 0.227 3.424 -0.874 H1N TXE 74 TXE H1P H1P H 0 1 N N N 61.136 -15.494 38.115 0.342 -1.936 -2.749 H1P TXE 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TXE O3 PA SING N N 1 TXE O3 PN SING N N 2 TXE PA O1P SING N N 3 TXE PA O2P DOUB N N 4 TXE PA "O5'" SING N N 5 TXE PN O5B SING N N 6 TXE PN O1N SING N N 7 TXE PN O2N DOUB N N 8 TXE C1B C2B SING N N 9 TXE C1B O4B SING N N 10 TXE C1B N1N SING N N 11 TXE C2B C3B SING N N 12 TXE C2B O2B SING N N 13 TXE C3B C4B SING N N 14 TXE C3B O3B SING N N 15 TXE C4B C5B SING N N 16 TXE C4B O4B SING N N 17 TXE C5B O5B SING N N 18 TXE "C1'" "C2'" SING N N 19 TXE "C1'" "O4'" SING N N 20 TXE "C1'" N9A SING N N 21 TXE N1A C2A DOUB Y N 22 TXE N1A C6A SING Y N 23 TXE N1N C2N SING N N 24 TXE N1N C6N SING N N 25 TXE "C2'" "O2'" SING N N 26 TXE "C2'" "C3'" SING N N 27 TXE C2A N3A SING Y N 28 TXE C2N C3N SING N N 29 TXE "C3'" "O3'" SING N N 30 TXE "C3'" "C4'" SING N N 31 TXE N3A C4A DOUB Y N 32 TXE C3N C4N SING N N 33 TXE C3N C7N SING N N 34 TXE "C4'" "O4'" SING N N 35 TXE "C4'" "C5'" SING N N 36 TXE C4A C5A SING Y N 37 TXE C4A N9A SING Y N 38 TXE C4N C5N SING N N 39 TXE "C5'" "O5'" SING N N 40 TXE C5A C6A DOUB Y N 41 TXE C5A N7A SING Y N 42 TXE C5N C6N DOUB N N 43 TXE C6A N6A SING N N 44 TXE N7A C8A DOUB Y N 45 TXE C7N N7N SING N N 46 TXE C7N O7N DOUB N N 47 TXE C8A N9A SING Y N 48 TXE C1B "H1'A" SING N N 49 TXE C2B "H2'A" SING N N 50 TXE C3B "H3'A" SING N N 51 TXE C4B "H4'A" SING N N 52 TXE C5B "H5'A" SING N N 53 TXE C5B "H5'B" SING N N 54 TXE O2B "H2'B" SING N N 55 TXE O3B "H3'B" SING N N 56 TXE "C1'" "H1'" SING N N 57 TXE "C2'" "H2'" SING N N 58 TXE "O2'" "HO2'" SING N N 59 TXE C2A H2A SING N N 60 TXE C2N H2N SING N N 61 TXE C2N H2NA SING N N 62 TXE "C3'" "H3'" SING N N 63 TXE "O3'" "HO3'" SING N N 64 TXE C3N H3N SING N N 65 TXE "C4'" "H4'" SING N N 66 TXE C4N H4N SING N N 67 TXE C4N H4NA SING N N 68 TXE "C5'" "H5'" SING N N 69 TXE "C5'" "H5'C" SING N N 70 TXE C5N H5N SING N N 71 TXE N6A HN6A SING N N 72 TXE N6A HN6B SING N N 73 TXE C6N H6N SING N N 74 TXE N7N HN7N SING N N 75 TXE N7N HN7A SING N N 76 TXE C8A H8A SING N N 77 TXE O1N H1N SING N N 78 TXE O1P H1P SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TXE InChI InChI 1.03 "InChI=1S/C21H31N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1,3,7-11,13-16,20-21,29-32H,2,4-6H2,(H2,23,33)(H,34,35)(H,36,37)(H2,22,24,25)/p-2/t9-,10-,11-,13-,14-,15-,16-,20-,21-/m1/s1" TXE InChIKey InChI 1.03 FDIVXUDDFSHSAE-MTKBYBFRSA-L TXE SMILES_CANONICAL CACTVS 3.385 "NC(=O)[C@@H]1CC=CN(C1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" TXE SMILES CACTVS 3.385 "NC(=O)[CH]1CC=CN(C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" TXE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C[C@@H](CC=C5)C(=O)N)O)O)O)O)N" TXE SMILES "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CC(CC=C5)C(=O)N)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id TXE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "[[(2R,3S,4R,5R)-5-[(3R)-3-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TXE "Create component" 2013-10-31 EBI TXE "Initial release" 2014-10-29 RCSB TXE "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TXE _pdbx_chem_comp_synonyms.name "1,2,3,4-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##