data_TXJ # _chem_comp.id TXJ _chem_comp.name "[(2S)-1-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-propan-2-yl]oxymethyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphinic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H16 N3 O12 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-10 _chem_comp.pdbx_modified_date 2024-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.147 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TXJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8J8G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TXJ P P1 P 0 1 N N N N N N 170.036 144.005 170.889 0.238 -0.506 0.258 P TXJ 1 TXJ N1 N1 N 0 1 N N N N N N 168.512 148.979 170.111 4.092 0.349 0.017 N1 TXJ 2 TXJ C2 C1 C 0 1 N N N N N N 169.283 150.076 170.093 3.839 1.159 -1.027 C2 TXJ 3 TXJ O2 O1 O 0 1 N N N N N N 169.843 150.411 169.051 3.883 0.708 -2.160 O2 TXJ 4 TXJ N3 N2 N 0 1 N N N N N N 169.467 150.836 171.253 3.540 2.444 -0.844 N3 TXJ 5 TXJ C4 C2 C 0 1 N N N N N N 168.835 150.458 172.440 3.485 2.959 0.377 C4 TXJ 6 TXJ N4 N3 N 0 1 N N N N N N 169.004 151.174 173.547 3.176 4.287 0.554 N4 TXJ 7 TXJ C5 C3 C 0 1 N N N N N N 168.027 149.329 172.455 3.746 2.137 1.493 C5 TXJ 8 TXJ C6 C4 C 0 1 N N N N N N 167.862 148.592 171.290 4.047 0.832 1.290 C6 TXJ 9 TXJ "C1'" C5 C 0 1 N N N N N N 168.317 148.203 168.864 4.411 -1.062 -0.216 "C1'" TXJ 10 TXJ "C2'" C6 C 0 1 N N S N N N 168.963 146.809 168.789 3.120 -1.883 -0.220 "C2'" TXJ 11 TXJ "C3'" C7 C 0 1 N N N N N N 170.495 146.910 168.837 3.453 -3.356 -0.463 "C3'" TXJ 12 TXJ "O3'" O2 O 0 1 N N N N N N 170.925 147.523 170.049 4.399 -3.798 0.513 "O3'" TXJ 13 TXJ "C4'" C8 C 0 1 N N N N N N 169.046 144.650 169.546 1.052 -1.964 0.989 "C4'" TXJ 14 TXJ "O4'" O3 O 0 1 N N N N N N 168.487 145.936 169.828 2.463 -1.745 1.041 "O4'" TXJ 15 TXJ OP1 O4 O 0 1 N N N N N N 171.040 143.113 170.287 0.455 0.670 1.130 OP1 TXJ 16 TXJ O6 O5 O 0 1 N N N N N N 170.476 145.113 171.760 0.862 -0.217 -1.198 O6 TXJ 17 TXJ O1B O6 O 0 1 N N N N N N 169.273 143.251 174.165 -3.957 -0.526 0.157 O1B TXJ 18 TXJ O1G O7 O 0 1 N N N N N N 170.509 141.233 173.997 -5.451 1.462 0.589 O1G TXJ 19 TXJ O2B O8 O 0 1 N N N N N N 167.982 145.012 172.934 -2.439 1.483 -0.012 O2B TXJ 20 TXJ O2G O9 O 0 1 N N N N N N 170.034 142.235 176.207 -6.204 -0.189 -1.166 O2G TXJ 21 TXJ O3A O10 O 0 1 N N N N N N 169.025 143.065 171.721 -1.342 -0.786 0.119 O3A TXJ 22 TXJ O3B O11 O 0 1 N N N N N N 167.002 142.672 173.144 -2.617 -0.005 -2.043 O3B TXJ 23 TXJ O3G O12 O 0 1 N N N N N N 168.211 141.152 174.915 -6.263 -0.789 1.393 O3G TXJ 24 TXJ PB P2 P 0 1 N N N N N N 168.181 143.549 172.999 -2.586 0.072 -0.435 PB TXJ 25 TXJ PG P3 P 0 1 N N N N N N 169.505 141.843 174.895 -5.469 0.021 0.251 PG TXJ 26 TXJ H1 H1 H 0 1 N N N N N N 169.586 151.987 173.533 2.997 4.850 -0.216 H1 TXJ 27 TXJ H2 H2 H 0 1 N N N N N N 168.549 150.899 174.394 3.136 4.661 1.448 H2 TXJ 28 TXJ H3 H3 H 0 1 N N N N N N 167.531 149.027 173.365 3.705 2.541 2.493 H3 TXJ 29 TXJ H4 H4 H 0 1 N N N N N N 167.230 147.716 171.293 4.250 0.183 2.128 H4 TXJ 30 TXJ H5 H5 H 0 1 N N N N N N 168.726 148.801 168.036 4.912 -1.168 -1.178 H5 TXJ 31 TXJ H6 H6 H 0 1 N N N N N N 167.234 148.073 168.722 5.067 -1.422 0.577 H6 TXJ 32 TXJ H7 H7 H 0 1 N N N N N N 168.693 146.375 167.815 2.464 -1.523 -1.013 H7 TXJ 33 TXJ H8 H8 H 0 1 N N N N N N 170.925 145.900 168.772 2.544 -3.953 -0.384 H8 TXJ 34 TXJ H9 H9 H 0 1 N N N N N N 170.843 147.512 167.985 3.878 -3.473 -1.460 H9 TXJ 35 TXJ H10 H10 H 0 1 N N N N N N 171.873 147.576 170.059 4.657 -4.725 0.419 H10 TXJ 36 TXJ H11 H11 H 0 1 N N N N N N 168.224 143.947 169.348 0.672 -2.124 1.998 H11 TXJ 37 TXJ H12 H12 H 0 1 N N N N N N 169.681 144.733 168.652 0.843 -2.842 0.378 H12 TXJ 38 TXJ H13 H13 H 0 1 N N N N N N 171.424 145.108 171.825 0.756 -0.947 -1.823 H13 TXJ 39 TXJ H14 H14 H 0 1 N N N N N N 170.959 142.022 176.253 -6.252 -1.111 -1.451 H14 TXJ 40 TXJ H15 H15 H 0 1 N N N N N N 166.215 143.202 173.179 -2.711 -0.902 -2.392 H15 TXJ 41 TXJ H16 H16 H 0 1 N N N N N N 168.241 140.406 174.328 -7.182 -0.511 1.505 H16 TXJ 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TXJ "C2'" "C3'" SING N N 1 TXJ "C2'" "C1'" SING N N 2 TXJ "C2'" "O4'" SING N N 3 TXJ "C3'" "O3'" SING N N 4 TXJ "C1'" N1 SING N N 5 TXJ O2 C2 DOUB N N 6 TXJ "C4'" "O4'" SING N N 7 TXJ "C4'" P SING N N 8 TXJ C2 N1 SING N N 9 TXJ C2 N3 SING N N 10 TXJ N1 C6 SING N N 11 TXJ OP1 P DOUB N N 12 TXJ P O3A SING N N 13 TXJ P O6 SING N N 14 TXJ N3 C4 DOUB N N 15 TXJ C6 C5 DOUB N N 16 TXJ O3A PB SING N N 17 TXJ C4 C5 SING N N 18 TXJ C4 N4 SING N N 19 TXJ O2B PB DOUB N N 20 TXJ PB O3B SING N N 21 TXJ PB O1B SING N N 22 TXJ O1G PG DOUB N N 23 TXJ O1B PG SING N N 24 TXJ PG O3G SING N N 25 TXJ PG O2G SING N N 26 TXJ N4 H1 SING N N 27 TXJ N4 H2 SING N N 28 TXJ C5 H3 SING N N 29 TXJ C6 H4 SING N N 30 TXJ "C1'" H5 SING N N 31 TXJ "C1'" H6 SING N N 32 TXJ "C2'" H7 SING N N 33 TXJ "C3'" H8 SING N N 34 TXJ "C3'" H9 SING N N 35 TXJ "O3'" H10 SING N N 36 TXJ "C4'" H11 SING N N 37 TXJ "C4'" H12 SING N N 38 TXJ O6 H13 SING N N 39 TXJ O2G H14 SING N N 40 TXJ O3B H15 SING N N 41 TXJ O3G H16 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TXJ InChI InChI 1.06 "InChI=1S/C8H16N3O12P3/c9-7-1-2-11(8(13)10-7)3-6(4-12)21-5-24(14,15)22-26(19,20)23-25(16,17)18/h1-2,6,12H,3-5H2,(H,14,15)(H,19,20)(H2,9,10,13)(H2,16,17,18)/t6-/m0/s1" TXJ InChIKey InChI 1.06 FBSIEHDOPYOBJD-LURJTMIESA-N TXJ SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C[C@@H](CO)OC[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C=C1" TXJ SMILES CACTVS 3.385 "NC1=NC(=O)N(C[CH](CO)OC[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)C=C1" TXJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)C[C@@H](CO)OCP(=O)(O)OP(=O)(O)OP(=O)(O)O" TXJ SMILES "OpenEye OEToolkits" 2.0.7 "C1=CN(C(=O)N=C1N)CC(CO)OCP(=O)(O)OP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id TXJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{S})-1-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-propan-2-yl]oxymethyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TXJ "Create component" 2023-05-10 PDBJ TXJ "Initial release" 2024-05-08 RCSB #