data_TYA
#
_chem_comp.id TYA
_chem_comp.name
;PHOSPHORIC ACID 2-AMINO-3-(4-HYDROXY-PHENYL)-PROPYL ESTER ADENOSIN-5'YL ESTER
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H24 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 495.403
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TYA
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3TS1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TYA OPP OPP O 0 1 N N N -12.327 14.459 -6.988 -2.696 0.578 0.138 OPP TYA 1
TYA P P P 0 1 N N N -13.255 15.253 -7.946 -1.456 1.300 -0.592 P TYA 2
TYA O1P O1P O 0 1 N N N -12.653 16.156 -8.950 -1.177 0.605 -1.943 O1P TYA 3
TYA O2P O2P O -1 1 N N N -13.968 14.465 -8.955 -1.798 2.787 -0.838 O2P TYA 4
TYA "O5'" O5* O 0 1 N N N -14.260 16.043 -7.037 -0.149 1.198 0.344 "O5'" TYA 5
TYA "C5'" C5* C 0 1 N N N -15.361 16.739 -7.598 0.879 1.955 -0.299 "C5'" TYA 6
TYA "C4'" C4* C 0 1 N N R -16.441 16.754 -6.482 2.155 1.899 0.543 "C4'" TYA 7
TYA "O4'" O4* O 0 1 N N N -17.679 16.671 -7.250 2.674 0.558 0.555 "O4'" TYA 8
TYA "C3'" C3* C 0 1 N N S -16.433 15.520 -5.573 3.234 2.806 -0.079 "C3'" TYA 9
TYA "O3'" O3* O 0 1 N N N -17.053 15.700 -4.327 3.629 3.827 0.839 "O3'" TYA 10
TYA "C2'" C2* C 0 1 N N R -17.238 14.476 -6.364 4.417 1.843 -0.363 "C2'" TYA 11
TYA "O2'" O2* O 0 1 N N N -17.919 13.588 -5.446 5.664 2.459 -0.036 "O2'" TYA 12
TYA "C1'" C1* C 0 1 N N R -18.167 15.379 -7.103 4.114 0.664 0.596 "C1'" TYA 13
TYA N9 N9 N 0 1 Y N N -18.961 14.930 -8.211 4.736 -0.571 0.113 N9 TYA 14
TYA C8 C8 C 0 1 Y N N -18.664 14.706 -9.509 4.166 -1.490 -0.717 C8 TYA 15
TYA N7 N7 N 0 1 Y N N -19.709 14.304 -10.239 5.000 -2.464 -0.941 N7 TYA 16
TYA C5 C5 C 0 1 Y N N -20.741 14.238 -9.313 6.154 -2.232 -0.271 C5 TYA 17
TYA C6 C6 C 0 1 Y N N -22.113 13.909 -9.454 7.374 -2.916 -0.139 C6 TYA 18
TYA N6 N6 N 0 1 N N N -22.699 13.503 -10.582 7.586 -4.119 -0.790 N6 TYA 19
TYA N1 N1 N 0 1 Y N N -22.863 13.986 -8.319 8.321 -2.381 0.625 N1 TYA 20
TYA C2 C2 C 0 1 Y N N -22.292 14.424 -7.159 8.128 -1.234 1.249 C2 TYA 21
TYA N3 N3 N 0 1 Y N N -21.069 14.764 -6.954 7.002 -0.559 1.155 N3 TYA 22
TYA C4 C4 C 0 1 Y N N -20.321 14.655 -8.085 6.001 -1.013 0.409 C4 TYA 23
TYA NH2 NH2 N 0 1 N N N -10.524 13.677 -4.976 -5.366 0.795 1.239 NH2 TYA 24
TYA CA CA C 0 1 N N S -11.562 14.685 -4.654 -5.066 0.139 -0.041 CA TYA 25
TYA C C C 0 1 N N N -12.718 14.502 -5.600 -3.845 0.803 -0.681 C TYA 26
TYA CB CB C 0 1 N N N -10.944 16.079 -4.715 -6.269 0.272 -0.977 CB TYA 27
TYA CG CG C 0 1 Y N N -10.308 16.421 -3.507 -7.438 -0.487 -0.404 CG TYA 28
TYA CD1 CD1 C 0 1 Y N N -11.052 16.448 -2.337 -8.322 0.148 0.447 CD1 TYA 29
TYA CD2 CD2 C 0 1 Y N N -8.935 16.743 -3.453 -7.627 -1.816 -0.736 CD2 TYA 30
TYA CE1 CE1 C 0 1 Y N N -10.456 16.807 -1.126 -9.394 -0.546 0.974 CE1 TYA 31
TYA CE2 CE2 C 0 1 Y N N -8.331 17.059 -2.230 -8.694 -2.515 -0.208 CE2 TYA 32
TYA CZ CZ C 0 1 Y N N -9.095 17.104 -1.070 -9.583 -1.881 0.647 CZ TYA 33
TYA OH OH O 0 1 N N N -8.584 17.420 0.142 -10.638 -2.565 1.164 OH TYA 34
TYA "H5'1" 1H5* H 0 0 N N N -15.103 17.750 -7.989 1.076 1.535 -1.285 "H5'1" TYA 35
TYA "H5'2" 2H5* H 0 0 N N N -15.717 16.314 -8.565 0.557 2.991 -0.402 "H5'2" TYA 36
TYA "H4'" H4* H 0 1 N N N -16.291 17.638 -5.820 1.941 2.222 1.562 "H4'" TYA 37
TYA "H3'" H3* H 0 1 N N N -15.379 15.243 -5.334 2.871 3.248 -1.007 "H3'" TYA 38
TYA "HO'3" 3HO* H 0 0 N N N -17.048 14.935 -3.763 4.345 4.321 0.416 "HO'3" TYA 39
TYA "H2'" H2* H 0 1 N N N -16.658 13.793 -7.028 4.409 1.511 -1.402 "H2'" TYA 40
TYA "HO'2" 2HO* H 0 0 N N N -18.416 12.942 -5.934 5.793 3.181 -0.667 "HO'2" TYA 41
TYA "H1'" H1* H 0 1 N N N -18.992 15.355 -6.353 4.453 0.894 1.606 "H1'" TYA 42
TYA H8 H8 H 0 1 N N N -17.655 14.839 -9.935 3.170 -1.420 -1.128 H8 TYA 43
TYA H61 1H6 H 0 1 N N N -23.686 13.266 -10.683 6.887 -4.500 -1.346 H61 TYA 44
TYA H62 2H6 H 0 1 N N N -22.170 12.694 -10.910 8.433 -4.582 -0.691 H62 TYA 45
TYA H2 H2 H 0 1 N N N -22.911 14.517 -6.251 8.924 -0.835 1.861 H2 TYA 46
TYA HN1 1HN H 0 1 N N N -9.740 13.801 -4.334 -5.552 1.764 1.031 HN1 TYA 47
TYA HN2 2HN H 0 1 N N N -10.237 13.709 -5.954 -6.231 0.397 1.572 HN2 TYA 48
TYA HA HA H 0 1 N N N -11.955 14.554 -3.619 -4.856 -0.917 0.132 HA TYA 49
TYA H1 1H H 0 1 N N N -13.492 15.286 -5.432 -3.676 0.377 -1.670 H1 TYA 50
TYA H2A 2H H 0 1 N N N -13.309 13.596 -5.328 -4.021 1.875 -0.773 H2A TYA 51
TYA HB1 1HB H 0 1 N N N -10.249 16.178 -5.581 -6.534 1.325 -1.080 HB1 TYA 52
TYA HB2 2HB H 0 1 N N N -11.698 16.845 -5.007 -6.015 -0.135 -1.956 HB2 TYA 53
TYA HD1 HD1 H 0 1 N N N -12.122 16.182 -2.369 -8.175 1.188 0.702 HD1 TYA 54
TYA HD2 HD2 H 0 1 N N N -8.328 16.747 -4.374 -6.935 -2.309 -1.402 HD2 TYA 55
TYA HE1 HE1 H 0 1 N N N -11.064 16.856 -0.207 -10.085 -0.049 1.640 HE1 TYA 56
TYA HE2 HE2 H 0 1 N N N -7.250 17.273 -2.180 -8.839 -3.555 -0.464 HE2 TYA 57
TYA HH HH H 0 1 N N N -7.656 17.622 0.180 -11.372 -2.455 0.545 HH TYA 58
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TYA OPP P SING N N 1
TYA OPP C SING N N 2
TYA P O1P DOUB N N 3
TYA P O2P SING N N 4
TYA P "O5'" SING N N 5
TYA "O5'" "C5'" SING N N 6
TYA "C5'" "C4'" SING N N 7
TYA "C5'" "H5'1" SING N N 8
TYA "C5'" "H5'2" SING N N 9
TYA "C4'" "O4'" SING N N 10
TYA "C4'" "C3'" SING N N 11
TYA "C4'" "H4'" SING N N 12
TYA "O4'" "C1'" SING N N 13
TYA "C3'" "O3'" SING N N 14
TYA "C3'" "C2'" SING N N 15
TYA "C3'" "H3'" SING N N 16
TYA "O3'" "HO'3" SING N N 17
TYA "C2'" "O2'" SING N N 18
TYA "C2'" "C1'" SING N N 19
TYA "C2'" "H2'" SING N N 20
TYA "O2'" "HO'2" SING N N 21
TYA "C1'" N9 SING N N 22
TYA "C1'" "H1'" SING N N 23
TYA N9 C8 SING Y N 24
TYA N9 C4 SING Y N 25
TYA C8 N7 DOUB Y N 26
TYA C8 H8 SING N N 27
TYA N7 C5 SING Y N 28
TYA C5 C6 SING Y N 29
TYA C5 C4 DOUB Y N 30
TYA C6 N6 SING N N 31
TYA C6 N1 DOUB Y N 32
TYA N6 H61 SING N N 33
TYA N6 H62 SING N N 34
TYA N1 C2 SING Y N 35
TYA C2 N3 DOUB Y N 36
TYA C2 H2 SING N N 37
TYA N3 C4 SING Y N 38
TYA NH2 CA SING N N 39
TYA NH2 HN1 SING N N 40
TYA NH2 HN2 SING N N 41
TYA CA C SING N N 42
TYA CA CB SING N N 43
TYA CA HA SING N N 44
TYA C H1 SING N N 45
TYA C H2A SING N N 46
TYA CB CG SING N N 47
TYA CB HB1 SING N N 48
TYA CB HB2 SING N N 49
TYA CG CD1 DOUB Y N 50
TYA CG CD2 SING Y N 51
TYA CD1 CE1 SING Y N 52
TYA CD1 HD1 SING N N 53
TYA CD2 CE2 DOUB Y N 54
TYA CD2 HD2 SING N N 55
TYA CE1 CZ DOUB Y N 56
TYA CE1 HE1 SING N N 57
TYA CE2 CZ SING Y N 58
TYA CE2 HE2 SING N N 59
TYA CZ OH SING N N 60
TYA OH HH SING N N 61
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TYA SMILES ACDLabs 10.04 "[O-]P(=O)(OCC(N)Cc1ccc(O)cc1)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O"
TYA SMILES_CANONICAL CACTVS 3.341 "N[C@H](CO[P]([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)Cc4ccc(O)cc4"
TYA SMILES CACTVS 3.341 "N[CH](CO[P]([O-])(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)Cc4ccc(O)cc4"
TYA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C[C@@H](CO[P@@](=O)([O-])OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)N)O"
TYA SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1CC(COP(=O)([O-])OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)N)O"
TYA InChI InChI 1.03
"InChI=1S/C19H25N6O8P/c20-11(5-10-1-3-12(26)4-2-10)6-31-34(29,30)32-7-13-15(27)16(28)19(33-13)25-9-24-14-17(21)22-8-23-18(14)25/h1-4,8-9,11,13,15-16,19,26-28H,5-7,20H2,(H,29,30)(H2,21,22,23)/p-1/t11-,13+,15+,16+,19+/m0/s1"
TYA InChIKey InChI 1.03 JJLCVHBFTXDJMM-KFAHYOAQSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TYA "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-({[(2S)-2-amino-3-(4-hydroxyphenyl)propyl]oxy}phosphinato)adenosine"
TYA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-2-amino-3-(4-hydroxyphenyl)propyl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TYA "Create component" 1999-07-08 EBI
TYA "Modify descriptor" 2011-06-04 RCSB
#