data_TYO # _chem_comp.id TYO _chem_comp.name "(4Z,6E)-2-AMINO-7-HYDROPEROXY-4-[(E)-2-HYDROXYVINYL]HEPTA-4,6-DIENOIC ACID" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H13 N O5" _chem_comp.mon_nstd_parent_comp_id TYR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-09-22 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 215.203 _chem_comp.one_letter_code Y _chem_comp.three_letter_code TYO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2HHF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TYO N N N 0 1 N N N Y Y N 29.983 -6.178 22.560 1.340 1.763 1.021 N TYO 1 TYO CA CA C 0 1 N N S Y N N 28.872 -6.228 21.615 2.060 0.637 0.413 CA TYO 2 TYO CB CB C 0 1 N N N N N N 27.919 -5.064 21.873 1.320 0.177 -0.844 CB TYO 3 TYO CG CG C 0 1 N N N N N N 26.503 -5.270 21.346 -0.030 -0.373 -0.460 CG TYO 4 TYO CD1 CD1 C 0 1 N N N N N N 25.658 -6.420 21.978 -0.159 -1.770 -0.043 CD1 TYO 5 TYO CE1 CE1 C 0 1 N N N N N N 24.332 -6.339 22.064 0.923 -2.560 -0.004 CE1 TYO 6 TYO OE1 OE1 O 0 1 N N N N N N 23.736 -6.032 23.326 0.804 -3.854 0.382 OE1 TYO 7 TYO CD2 CD2 C 0 1 N N N N N N 26.115 -4.552 20.211 -1.120 0.423 -0.500 CD2 TYO 8 TYO CE2 CE2 C 0 1 N N N N N N 25.049 -5.041 19.140 -2.430 -0.111 -0.126 CE2 TYO 9 TYO CZ CZ C 0 1 N N N N N N 23.735 -4.955 19.403 -3.512 0.679 -0.166 CZ TYO 10 TYO OH OH O 0 1 N N N N N N 22.813 -5.613 18.530 -4.725 0.185 0.180 OH TYO 11 TYO OH1 OH1 O 0 1 N N N N N N 21.579 -6.230 19.112 -5.817 1.163 0.089 OH1 TYO 12 TYO C C C 0 1 N N N Y N Y 29.443 -6.186 20.198 3.455 1.072 0.044 C TYO 13 TYO O O O 0 1 N N N Y N Y 30.245 -5.314 19.859 3.708 2.247 -0.081 O TYO 14 TYO OXT OXT O 0 1 N Y N Y N Y 29.070 -7.189 19.381 4.416 0.155 -0.146 OXT TYO 15 TYO H HN1 H 0 1 N N N Y Y N 30.848 -6.167 22.058 1.277 2.540 0.380 HN1 TYO 16 TYO H2 HN2 H 0 1 N Y N Y Y N 29.910 -5.351 23.117 0.425 1.480 1.336 HN2 TYO 17 TYO HA HA H 0 1 N N N Y N N 28.297 -7.157 21.740 2.114 -0.187 1.125 HA TYO 18 TYO HB1 HB1 H 0 1 N N N N N N 27.854 -4.919 22.961 1.189 1.023 -1.518 HB1 TYO 19 TYO HB2 HB2 H 0 1 N N N N N N 28.330 -4.197 21.335 1.900 -0.599 -1.344 HB2 TYO 20 TYO HD1 HD1 H 0 1 N N N N N N 26.159 -7.300 22.353 -1.125 -2.164 0.232 HD1 TYO 21 TYO HE1 HE1 H 0 1 N N N N N N 23.716 -6.503 21.193 1.890 -2.166 -0.279 HE1 TYO 22 TYO HOE1 HOE1 H 0 0 N N N N N N 24.413 -5.964 23.988 1.638 -4.344 0.379 HOE1 TYO 23 TYO HD21 HD21 H 0 0 N N N N N N 26.576 -3.589 20.050 -1.025 1.454 -0.807 HD21 TYO 24 TYO HE2 HE2 H 0 1 N N N N N N 25.383 -5.445 18.195 -2.525 -1.142 0.181 HE2 TYO 25 TYO HZ HZ H 0 1 N N N N N N 23.381 -4.399 20.258 -3.417 1.710 -0.474 HZ TYO 26 TYO HOH1 HOH1 H 0 0 N N N N N N 21.700 -6.361 20.045 -6.683 0.810 0.335 HOH1 TYO 27 TYO HXT HXT H 0 1 N Y N Y N Y 29.515 -7.101 18.547 5.295 0.482 -0.382 HXT TYO 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYO N CA SING N N 1 TYO N H SING N N 2 TYO N H2 SING N N 3 TYO CA C SING N N 4 TYO CA CB SING N N 5 TYO CA HA SING N N 6 TYO CB CG SING N N 7 TYO CB HB1 SING N N 8 TYO CB HB2 SING N N 9 TYO CG CD2 DOUB N Z 10 TYO CG CD1 SING N N 11 TYO CD1 CE1 DOUB N E 12 TYO CD1 HD1 SING N N 13 TYO CE1 OE1 SING N N 14 TYO CE1 HE1 SING N N 15 TYO OE1 HOE1 SING N N 16 TYO CD2 CE2 SING N N 17 TYO CD2 HD21 SING N N 18 TYO CE2 CZ DOUB N E 19 TYO CE2 HE2 SING N N 20 TYO CZ OH SING N N 21 TYO CZ HZ SING N N 22 TYO OH OH1 SING N N 23 TYO OH1 HOH1 SING N N 24 TYO C O DOUB N N 25 TYO C OXT SING N N 26 TYO OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYO SMILES ACDLabs 10.04 "O=C(O)C(N)CC(\C=C\O)=C\C=C\OO" TYO SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CC(/C=C/O)=C/C=C/OO)C(O)=O" TYO SMILES CACTVS 3.341 "N[CH](CC(C=CO)=CC=COO)C(O)=O" TYO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)N)C(=C\C=C\OO)C=CO" TYO SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)N)C(=CC=COO)C=CO" TYO InChI InChI 1.03 "InChI=1S/C9H13NO5/c10-8(9(12)13)6-7(3-4-11)2-1-5-15-14/h1-5,8,11,14H,6,10H2,(H,12,13)/b4-3?,5-1+,7-2+/t8-/m0/s1" TYO InChIKey InChI 1.03 AMEKAKFJYGGFTQ-BFJUJRPPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYO "SYSTEMATIC NAME" ACDLabs 10.04 "(2S,4Z,6E)-2-amino-7-hydroperoxy-4-[(E)-2-hydroxyethenyl]hepta-4,6-dienoic acid" TYO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,6E)-2-amino-7-hydroperoxy-4-(2-hydroxyethenyl)hepta-4,6-dienoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TYO "Create component" 2006-09-22 EBI TYO "Modify descriptor" 2011-06-04 RCSB TYO "Modify backbone" 2023-11-03 PDBE #