data_TYV # _chem_comp.id TYV _chem_comp.name alpha-D-Tyvelopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;alpha-D-Tyvelose; 3,6-dideoxy-alpha-D-arabino-hexopyranose; 3,6-dideoxy-alpha-D-mannopyranose; 3,6-dideoxy-alpha-D-altropyranose; 3-deoxy-alpha-D-rhamnopyranose; D-Tyvelose; Tyvelose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TYV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TYU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 TYV alpha-D-Tyvelose PDB ? 2 TYV "3,6-dideoxy-alpha-D-arabino-hexopyranose" PDB ? 3 TYV "3,6-dideoxy-alpha-D-mannopyranose" PDB ? 4 TYV "3,6-dideoxy-alpha-D-altropyranose" PDB ? 5 TYV 3-deoxy-alpha-D-rhamnopyranose PDB ? 6 TYV D-Tyvelose PDB ? 7 TYV Tyvelose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TYV C1 C1 C 0 1 N N S 69.317 48.244 89.220 0.817 0.061 -1.355 C1 TYV 1 TYV C2 C2 C 0 1 N N S 68.902 48.540 87.774 -0.704 0.093 -1.511 C2 TYV 2 TYV C3 C3 C 0 1 N N N 70.109 48.443 86.820 -1.322 0.716 -0.253 C3 TYV 3 TYV C4 C4 C 0 1 N N S 71.266 49.309 87.339 -0.807 -0.045 0.972 C4 TYV 4 TYV C5 C5 C 0 1 N N R 71.610 48.888 88.760 0.722 -0.065 0.941 C5 TYV 5 TYV C6 C6 C 0 1 N N N 72.741 49.678 89.378 1.247 -0.793 2.180 C6 TYV 6 TYV O1 O1 O 0 1 N Y N 69.567 46.872 89.379 1.302 1.391 -1.159 O1 TYV 7 TYV O2 O2 O 0 1 N N N 68.332 49.839 87.709 -1.196 -1.237 -1.678 O2 TYV 8 TYV O4 O4 O 0 1 N N N 72.402 49.158 86.509 -1.252 0.608 2.163 O4 TYV 9 TYV O5 O5 O 0 1 N N N 70.442 49.049 89.607 1.171 -0.742 -0.231 O5 TYV 10 TYV H1 H1 H 0 1 N N N 68.477 48.516 89.901 1.265 -0.358 -2.256 H1 TYV 11 TYV H2 H2 H 0 1 N N N 68.150 47.781 87.453 -0.969 0.692 -2.382 H2 TYV 12 TYV H31 H31 H 0 1 N N N 70.422 47.386 86.651 -1.030 1.764 -0.183 H31 TYV 13 TYV H32 H32 H 0 1 N N N 69.832 48.701 85.771 -2.408 0.638 -0.303 H32 TYV 14 TYV H4 H4 H 0 1 N N N 70.954 50.379 87.328 -1.187 -1.066 0.953 H4 TYV 15 TYV H5 H5 H 0 1 N N N 71.939 47.825 88.691 1.098 0.957 0.935 H5 TYV 16 TYV H61 H61 H 0 1 N N N 72.993 49.369 90.419 2.337 -0.806 2.160 H61 TYV 17 TYV H62 H62 H 0 1 N N N 73.646 49.639 88.728 0.906 -0.275 3.077 H62 TYV 18 TYV H63 H63 H 0 1 N N N 72.524 50.770 89.334 0.872 -1.816 2.187 H63 TYV 19 TYV HO1 HO1 H 0 1 N Y N 69.824 46.688 90.275 2.262 1.329 -1.071 HO1 TYV 20 TYV HO2 HO2 H 0 1 N Y N 68.074 50.022 86.813 -0.777 -1.592 -2.474 HO2 TYV 21 TYV HO4 HO4 H 0 1 N Y N 73.117 49.693 86.830 -2.218 0.605 2.138 HO4 TYV 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TYV C1 C2 SING N N 1 TYV C1 O1 SING N N 2 TYV C1 O5 SING N N 3 TYV C1 H1 SING N N 4 TYV C2 C3 SING N N 5 TYV C2 O2 SING N N 6 TYV C2 H2 SING N N 7 TYV C3 C4 SING N N 8 TYV C3 H31 SING N N 9 TYV C3 H32 SING N N 10 TYV C4 C5 SING N N 11 TYV C4 O4 SING N N 12 TYV C4 H4 SING N N 13 TYV C5 C6 SING N N 14 TYV C5 O5 SING N N 15 TYV C5 H5 SING N N 16 TYV C6 H61 SING N N 17 TYV C6 H62 SING N N 18 TYV C6 H63 SING N N 19 TYV O1 HO1 SING N N 20 TYV O2 HO2 SING N N 21 TYV O4 HO4 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TYV SMILES ACDLabs 10.04 "OC1C(OC(O)C(O)C1)C" TYV SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H](O)[C@@H](O)C[C@@H]1O" TYV SMILES CACTVS 3.341 "C[CH]1O[CH](O)[CH](O)C[CH]1O" TYV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H](C[C@@H]([C@H](O1)O)O)O" TYV SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(CC(C(O1)O)O)O" TYV InChI InChI 1.03 "InChI=1S/C6H12O4/c1-3-4(7)2-5(8)6(9)10-3/h3-9H,2H2,1H3/t3-,4+,5+,6+/m1/s1" TYV InChIKey InChI 1.03 KYPWIZMAJMNPMJ-VANKVMQKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TYV "SYSTEMATIC NAME" ACDLabs 10.04 "3,6-dideoxy-alpha-D-arabino-hexopyranose" TYV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,5S,6R)-6-methyloxane-2,3,5-triol" TYV "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DTyva TYV "COMMON NAME" GMML 1.0 a-D-Tyvelopyranose TYV "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-3-deoxy-Rhap TYV "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Tyv # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support TYV "CARBOHYDRATE ISOMER" D PDB ? TYV "CARBOHYDRATE RING" pyranose PDB ? TYV "CARBOHYDRATE ANOMER" alpha PDB ? TYV "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TYV "Create component" 1999-07-08 EBI TYV "Modify descriptor" 2011-06-04 RCSB TYV "Other modification" 2019-08-12 RCSB TYV "Other modification" 2019-12-19 RCSB TYV "Other modification" 2020-07-03 RCSB TYV "Modify name" 2020-07-17 RCSB TYV "Modify synonyms" 2020-07-17 RCSB ##