data_TZD # _chem_comp.id TZD _chem_comp.name ;2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "THIAMIN THIAZOLONE DIPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TZD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RP7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TZD "N1'" N1* N 0 1 Y N N 26.855 -36.642 7.976 -0.360 -1.547 5.902 "N1'" TZD 1 TZD "C2'" C2* C 0 1 Y N N 27.573 -37.510 8.776 -1.063 -1.068 6.909 "C2'" TZD 2 TZD C2A C2A C 0 1 N N N 27.525 -38.956 8.421 -1.426 -1.983 8.050 C2A TZD 3 TZD "N3'" N3* N 0 1 Y N N 28.306 -37.101 9.814 -1.462 0.186 6.943 "N3'" TZD 4 TZD "C4'" C4* C 0 1 Y N N 28.357 -35.732 10.107 -1.156 1.023 5.955 "C4'" TZD 5 TZD "N4'" N4* N 0 1 N N N 29.119 -35.385 11.121 -1.572 2.344 5.997 "N4'" TZD 6 TZD "C5'" C5* C 0 1 Y N N 27.598 -34.766 9.270 -0.412 0.548 4.874 "C5'" TZD 7 TZD "C6'" C6* C 0 1 Y N N 26.874 -35.286 8.226 -0.020 -0.776 4.879 "C6'" TZD 8 TZD C35 C35 C 0 1 N N N 27.583 -33.269 9.498 -0.046 1.457 3.729 C35 TZD 9 TZD N3 N3 N 0 1 Y N N 26.929 -32.853 10.807 0.728 0.707 2.737 N3 TZD 10 TZD C2 C2 C 0 1 Y N N 27.639 -32.576 11.935 2.077 0.654 2.819 C2 TZD 11 TZD OC2 OC2 O 0 1 N N N 28.874 -32.673 12.085 2.813 1.164 3.645 OC2 TZD 12 TZD S1 S1 S 0 1 Y N N 26.546 -32.071 13.217 2.491 -0.331 1.453 S1 TZD 13 TZD C5 C5 C 0 1 Y N N 25.153 -32.266 12.181 0.842 -0.615 0.835 C5 TZD 14 TZD C4 C4 C 0 1 Y N N 25.517 -32.681 10.929 0.099 0.057 1.718 C4 TZD 15 TZD C4A C4A C 0 1 N N N 24.598 -32.944 9.764 -1.401 0.097 1.590 C4A TZD 16 TZD C5A C5A C 0 1 N N N 23.766 -32.064 12.700 0.401 -1.407 -0.368 C5A TZD 17 TZD C5B C5B C 0 1 N N N 23.558 -32.759 14.012 0.354 -0.491 -1.592 C5B TZD 18 TZD O5G O5G O 0 1 N N N 22.143 -32.890 14.221 -0.063 -1.242 -2.734 O5G TZD 19 TZD P1 P1 P 0 1 N N R 21.572 -33.764 15.429 -0.089 -0.221 -3.979 P1 TZD 20 TZD O11 O11 O 0 1 N N N 22.370 -33.202 16.696 -0.554 -1.005 -5.306 O11 TZD 21 TZD O12 O12 O 0 1 N N N 20.137 -33.440 15.584 -1.040 0.876 -3.696 O12 TZD 22 TZD O13 O13 O 0 1 N N N 21.976 -35.185 15.224 1.383 0.388 -4.204 O13 TZD 23 TZD P2 P2 P 0 1 N N N 22.316 -31.867 17.575 -0.558 0.070 -6.504 P2 TZD 24 TZD O21 O21 O 0 1 N N N 22.332 -32.318 19.068 -1.016 -0.649 -7.870 O21 TZD 25 TZD O22 O22 O 0 1 N N N 23.554 -31.103 17.282 0.802 0.626 -6.672 O22 TZD 26 TZD O23 O23 O 0 1 N N N 21.024 -31.210 17.281 -1.585 1.259 -6.154 O23 TZD 27 TZD H2A1 1H2A H 0 0 N N N 28.104 -39.656 9.066 -0.644 -1.945 8.808 H2A1 TZD 28 TZD H2A2 2H2A H 0 0 N N N 26.462 -39.290 8.369 -2.372 -1.662 8.486 H2A2 TZD 29 TZD H2A3 3H2A H 0 0 N N N 27.834 -39.088 7.358 -1.524 -3.004 7.680 H2A3 TZD 30 TZD "H4'1" 1H4* H 0 0 N N N 29.156 -34.388 11.334 -2.089 2.666 6.752 "H4'1" TZD 31 TZD "H4'2" 2H4* H 0 0 N N N 30.063 -35.743 10.982 -1.348 2.946 5.271 "H4'2" TZD 32 TZD "H6'" H6* H 0 1 N N N 26.298 -34.603 7.578 0.555 -1.178 4.059 "H6'" TZD 33 TZD H351 1H35 H 0 0 N N N 28.613 -32.850 9.423 -0.954 1.841 3.265 H351 TZD 34 TZD H352 2H35 H 0 0 N N N 27.105 -32.745 8.637 0.550 2.289 4.102 H352 TZD 35 TZD H4A1 1H4A H 0 0 N N N 23.495 -32.809 9.859 -1.706 -0.478 0.716 H4A1 TZD 36 TZD H4A2 2H4A H 0 0 N N N 24.948 -32.329 8.901 -1.853 -0.330 2.484 H4A2 TZD 37 TZD H4A3 3H4A H 0 0 N N N 24.789 -33.980 9.399 -1.728 1.131 1.476 H4A3 TZD 38 TZD H5A1 1H5A H 0 0 N N N 23.511 -30.980 12.769 1.107 -2.218 -0.548 H5A1 TZD 39 TZD H5A2 2H5A H 0 0 N N N 23.002 -32.374 11.949 -0.590 -1.822 -0.187 H5A2 TZD 40 TZD H5B1 1H5B H 0 0 N N N 24.096 -33.733 14.075 -0.351 0.319 -1.413 H5B1 TZD 41 TZD H5B2 2H5B H 0 0 N N N 24.074 -32.248 14.858 1.346 -0.076 -1.774 H5B2 TZD 42 TZD H13 H13 H 0 1 N N N 21.636 -35.705 15.942 1.970 -0.357 -4.385 H13 TZD 43 TZD H21 H21 H 0 1 N N N 22.299 -31.525 19.590 -1.005 0.027 -8.560 H21 TZD 44 TZD H23 H23 H 0 1 N N N 20.991 -30.417 17.803 -2.457 0.855 -6.053 H23 TZD 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TZD "N1'" "C2'" DOUB Y N 1 TZD "N1'" "C6'" SING Y N 2 TZD "C2'" C2A SING N N 3 TZD "C2'" "N3'" SING Y N 4 TZD C2A H2A1 SING N N 5 TZD C2A H2A2 SING N N 6 TZD C2A H2A3 SING N N 7 TZD "N3'" "C4'" DOUB Y N 8 TZD "C4'" "N4'" SING N N 9 TZD "C4'" "C5'" SING Y N 10 TZD "N4'" "H4'1" SING N N 11 TZD "N4'" "H4'2" SING N N 12 TZD "C5'" "C6'" DOUB Y N 13 TZD "C5'" C35 SING N N 14 TZD "C6'" "H6'" SING N N 15 TZD C35 N3 SING N N 16 TZD C35 H351 SING N N 17 TZD C35 H352 SING N N 18 TZD N3 C2 SING Y N 19 TZD N3 C4 SING Y N 20 TZD C2 OC2 DOUB N N 21 TZD C2 S1 SING Y N 22 TZD S1 C5 SING Y N 23 TZD C5 C4 DOUB Y N 24 TZD C5 C5A SING N N 25 TZD C4 C4A SING N N 26 TZD C4A H4A1 SING N N 27 TZD C4A H4A2 SING N N 28 TZD C4A H4A3 SING N N 29 TZD C5A C5B SING N N 30 TZD C5A H5A1 SING N N 31 TZD C5A H5A2 SING N N 32 TZD C5B O5G SING N N 33 TZD C5B H5B1 SING N N 34 TZD C5B H5B2 SING N N 35 TZD O5G P1 SING N N 36 TZD P1 O11 SING N N 37 TZD P1 O12 DOUB N N 38 TZD P1 O13 SING N N 39 TZD O11 P2 SING N N 40 TZD O13 H13 SING N N 41 TZD P2 O21 SING N N 42 TZD P2 O22 DOUB N N 43 TZD P2 O23 SING N N 44 TZD O21 H21 SING N N 45 TZD O23 H23 SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TZD SMILES ACDLabs 10.04 "O=C1SC(=C(N1Cc2c(nc(nc2)C)N)C)CCOP(=O)(O)OP(=O)(O)O" TZD SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CN2C(=C(CCO[P@](O)(=O)O[P](O)(O)=O)SC2=O)C)c(N)n1" TZD SMILES CACTVS 3.341 "Cc1ncc(CN2C(=C(CCO[P](O)(=O)O[P](O)(O)=O)SC2=O)C)c(N)n1" TZD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ncc(c(n1)N)CN2C(=C(SC2=O)CCO[P@@](=O)(O)OP(=O)(O)O)C" TZD SMILES "OpenEye OEToolkits" 1.5.0 "Cc1ncc(c(n1)N)CN2C(=C(SC2=O)CCOP(=O)(O)OP(=O)(O)O)C" TZD InChI InChI 1.03 "InChI=1S/C12H18N4O8P2S/c1-7-10(3-4-23-26(21,22)24-25(18,19)20)27-12(17)16(7)6-9-5-14-8(2)15-11(9)13/h5H,3-4,6H2,1-2H3,(H,21,22)(H2,13,14,15)(H2,18,19,20)" TZD InChIKey InChI 1.03 ZGJUYGIRPQSCFA-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TZD "SYSTEMATIC NAME" ACDLabs 10.04 "2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-4-methyl-2-oxo-2,3-dihydro-1,3-thiazol-5-yl}ethyl trihydrogen diphosphate" TZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-oxo-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TZD "Create component" 2003-12-17 EBI TZD "Modify descriptor" 2011-06-04 RCSB TZD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TZD _pdbx_chem_comp_synonyms.name "THIAMIN THIAZOLONE DIPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##