data_U08 # _chem_comp.id U08 _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H13 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Remdesivir, reacted form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-15 _chem_comp.pdbx_modified_date 2022-07-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 291.263 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BF6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U08 C8 C1 C 0 1 N N N 16.883 -1.955 3.526 -0.932 -0.472 -1.708 C8 U08 1 U08 C5 C2 C 0 1 Y N N 18.887 -2.162 4.769 0.588 -0.668 0.198 C5 U08 2 U08 C6 C3 C 0 1 N N N 20.240 -3.520 0.780 -3.306 1.897 1.131 C6 U08 3 U08 N1 N1 N 0 1 Y N N 18.655 -3.164 5.658 1.656 0.091 -0.110 N1 U08 4 U08 C2 C4 C 0 1 N N R 18.932 -1.001 2.486 -1.795 -1.412 0.416 C2 U08 5 U08 N3 N2 N 0 1 N N N 15.760 -1.801 3.614 -1.012 -0.527 -2.839 N3 U08 6 U08 C4 C5 C 0 1 N N R 18.873 -3.013 1.215 -2.713 0.834 0.204 C4 U08 7 U08 O2 O1 O 0 1 N N N 18.266 0.199 2.760 -2.096 -2.477 -0.489 O2 U08 8 U08 N2 N3 N 0 1 Y N N 17.879 -4.269 5.407 1.816 1.261 -0.865 N2 U08 9 U08 O4 O2 O 0 1 N N N 20.562 -3.164 -0.570 -3.007 3.197 0.617 O4 U08 10 U08 N4 N4 N 0 1 Y N N 18.444 -4.975 7.639 4.086 1.266 -0.442 N4 U08 11 U08 C7 C6 C 0 1 Y N N 19.733 -1.271 5.392 0.990 -1.710 0.973 C7 U08 12 U08 C1 C7 C 0 1 N N R 18.341 -2.106 3.366 -0.829 -0.401 -0.241 C1 U08 13 U08 C10 C8 C 0 1 Y N N 20.013 -1.748 6.671 2.369 -1.599 1.158 C10 U08 14 U08 C11 C9 C 0 1 Y N N 19.205 -3.887 7.861 4.025 0.165 0.287 C11 U08 15 U08 C12 C10 C 0 1 Y N N 17.858 -5.111 6.441 2.999 1.795 -1.001 C12 U08 16 U08 C3 C11 C 0 1 N N S 18.698 -1.503 1.080 -3.062 -0.581 0.715 C3 U08 17 U08 C9 C12 C 0 1 Y N N 19.336 -2.941 6.832 2.775 -0.468 0.477 C9 U08 18 U08 N5 N5 N 0 1 N N N 19.784 -3.743 9.056 5.168 -0.361 0.855 N5 U08 19 U08 O1 O3 O 0 1 N N N 18.647 -3.315 2.630 -1.270 0.890 0.232 O1 U08 20 U08 O3 O4 O 0 1 N N N 17.396 -1.197 0.616 -4.185 -1.107 0.004 O3 U08 21 U08 H1 H1 H 0 1 N N N 20.252 -4.617 0.866 -4.386 1.768 1.187 H1 U08 22 U08 H2 H2 H 0 1 N N N 21.002 -3.092 1.447 -2.875 1.792 2.126 H2 U08 23 U08 H3 H3 H 0 1 N N N 20.012 -0.916 2.677 -1.367 -1.806 1.338 H3 U08 24 U08 H4 H4 H 0 1 N N N 18.103 -3.511 0.607 -3.078 0.973 -0.814 H4 U08 25 U08 H5 H5 H 0 1 N N N 18.448 0.466 3.653 -2.699 -3.141 -0.127 H5 U08 26 U08 H6 H6 H 0 1 N N N 21.422 -3.503 -0.791 -3.353 3.921 1.156 H6 U08 27 U08 H7 H7 H 0 1 N N N 20.115 -0.357 4.962 0.355 -2.486 1.374 H7 U08 28 U08 H8 H8 H 0 1 N N N 20.646 -1.271 7.405 2.998 -2.269 1.726 H8 U08 29 U08 H9 H9 H 0 1 N N N 17.296 -6.021 6.294 3.099 2.696 -1.587 H9 U08 30 U08 H10 H10 H 0 1 N N N 19.468 -1.100 0.406 -3.262 -0.562 1.786 H10 U08 31 U08 H11 H11 H 0 1 N N N 19.545 -4.520 9.639 6.022 0.077 0.721 H11 U08 32 U08 H12 H12 H 0 1 N N N 20.777 -3.705 8.943 5.116 -1.170 1.389 H12 U08 33 U08 H13 H13 H 0 1 N N N 17.301 -0.255 0.537 -4.995 -0.588 0.108 H13 U08 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U08 O4 C6 SING N N 1 U08 O3 C3 SING N N 2 U08 C6 C4 SING N N 3 U08 C3 C4 SING N N 4 U08 C3 C2 SING N N 5 U08 C4 O1 SING N N 6 U08 C2 O2 SING N N 7 U08 C2 C1 SING N N 8 U08 O1 C1 SING N N 9 U08 C1 C8 SING N N 10 U08 C1 C5 SING N N 11 U08 C8 N3 TRIP N N 12 U08 C5 C7 DOUB Y N 13 U08 C5 N1 SING Y N 14 U08 C7 C10 SING Y N 15 U08 N2 N1 SING Y N 16 U08 N2 C12 DOUB Y N 17 U08 N1 C9 SING Y N 18 U08 C12 N4 SING Y N 19 U08 C10 C9 DOUB Y N 20 U08 C9 C11 SING Y N 21 U08 N4 C11 DOUB Y N 22 U08 C11 N5 SING N N 23 U08 C6 H1 SING N N 24 U08 C6 H2 SING N N 25 U08 C2 H3 SING N N 26 U08 C4 H4 SING N N 27 U08 O2 H5 SING N N 28 U08 O4 H6 SING N N 29 U08 C7 H7 SING N N 30 U08 C10 H8 SING N N 31 U08 C12 H9 SING N N 32 U08 C3 H10 SING N N 33 U08 N5 H11 SING N N 34 U08 N5 H12 SING N N 35 U08 O3 H13 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U08 InChI InChI 1.03 "InChI=1S/C12H13N5O4/c13-4-12(10(20)9(19)7(3-18)21-12)8-2-1-6-11(14)15-5-16-17(6)8/h1-2,5,7,9-10,18-20H,3H2,(H2,14,15,16)/t7-,9-,10-,12+/m1/s1" U08 InChIKey InChI 1.03 BRDWIEOJOWJCLU-LTGWCKQJSA-N U08 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO)[C@@H](O)[C@H]3O)C#N" U08 SMILES CACTVS 3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO)[CH](O)[CH]3O)C#N" U08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)CO)O)O)C#N" U08 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)CO)O)O)C#N" # _pdbx_chem_comp_identifier.comp_id U08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U08 "Create component" 2021-01-15 PDBE U08 "Initial release" 2021-01-27 RCSB U08 "Modify synonyms" 2022-07-20 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id U08 _pdbx_chem_comp_synonyms.name "Remdesivir, reacted form" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #