data_U1S # _chem_comp.id U1S _chem_comp.name "1-{5-deoxy-5-[4-(ethoxycarbonyl)piperidin-1-yl]-alpha-L-arabinofuranosyl}pyrimidine-2,4(1H,3H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H25 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.396 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U1S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D6O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U1S C4 C4 C 0 1 N N N 34.421 -4.555 12.358 -3.923 -3.281 -0.056 C4 U1S 1 U1S C5 C5 C 0 1 N N N 35.596 -4.440 13.095 -4.381 -2.647 -1.236 C5 U1S 2 U1S C6 C6 C 0 1 N N N 36.401 -3.310 12.944 -4.030 -1.364 -1.471 C6 U1S 3 U1S N1 N1 N 0 1 N N N 36.040 -2.267 12.054 -3.242 -0.701 -0.570 N1 U1S 4 U1S N3 N3 N 0 1 N N N 34.052 -3.539 11.458 -3.148 -2.593 0.807 N3 U1S 5 U1S CAV CAV C 0 1 N N N 43.105 -1.605 15.568 3.988 0.739 -0.053 CAV U1S 6 U1S CAK CAK C 0 1 N N N 42.512 -0.206 15.347 3.508 1.469 -1.311 CAK U1S 7 U1S CAM CAM C 0 1 N N N 41.745 -0.109 14.008 2.386 2.438 -0.936 CAM U1S 8 U1S CAJ CAJ C 0 1 N N N 42.557 -2.603 14.538 2.804 0.011 0.588 CAJ U1S 9 U1S CAL CAL C 0 1 N N N 41.035 -2.462 14.373 1.701 1.023 0.908 CAL U1S 10 U1S NBA NBA N 0 1 N N N 40.660 -1.116 13.886 1.276 1.693 -0.327 NBA U1S 11 U1S "C5'" "C5'" C 0 1 N N N 39.482 -0.636 14.630 0.125 2.571 -0.080 "C5'" U1S 12 U1S "C4'" "C4'" C 0 1 N N S 38.190 -0.722 13.784 -1.087 1.724 0.316 "C4'" U1S 13 U1S "O4'" "O4'" O 0 1 N N N 38.251 -1.303 12.436 -1.437 0.826 -0.749 "O4'" U1S 14 U1S "C3'" "C3'" C 0 1 N N R 37.639 0.641 13.448 -2.332 2.625 0.512 "C3'" U1S 15 U1S "O3'" "O3'" O 0 1 N N N 37.178 1.351 14.588 -2.391 3.140 1.844 "O3'" U1S 16 U1S "C2'" "C2'" C 0 1 N N R 36.446 0.243 12.607 -3.476 1.608 0.254 "C2'" U1S 17 U1S "O2'" "O2'" O 0 1 N N N 36.305 1.318 11.694 -4.641 2.268 -0.244 "O2'" U1S 18 U1S "C1'" "C1'" C 0 1 N N R 36.921 -1.053 11.891 -2.861 0.690 -0.825 "C1'" U1S 19 U1S O4 O4 O 0 1 N N N 33.713 -5.551 12.486 -4.230 -4.435 0.180 O4 U1S 20 U1S C2 C2 C 0 1 N N N 34.854 -2.393 11.306 -2.814 -1.315 0.548 C2 U1S 21 U1S O2 O2 O 0 1 N N N 34.504 -1.516 10.517 -2.114 -0.707 1.335 O2 U1S 22 U1S H5 H5 H 0 1 N N N 35.884 -5.223 13.781 -5.002 -3.182 -1.939 H5 U1S 23 U1S H6 H6 H 0 1 N N N 37.314 -3.229 13.515 -4.369 -0.864 -2.366 H6 U1S 24 U1S HN3 HN3 H 0 1 N N N 33.213 -3.632 10.922 -2.831 -3.020 1.618 HN3 U1S 25 U1S C15 C15 C 0 1 N N N 45.911 -4.604 14.186 7.168 -2.731 1.304 C15 U1S 26 U1S HAV HAV H 0 1 N N N 42.826 -1.950 16.575 4.397 1.462 0.653 HAV U1S 27 U1S HAK HAK H 0 1 N N N 41.815 0.015 16.169 4.338 2.024 -1.748 HAK U1S 28 U1S HAKA HAKA H 0 0 N N N 43.341 0.516 15.319 3.135 0.742 -2.033 HAKA U1S 29 U1S HAM HAM H 0 1 N N N 41.296 0.893 13.939 2.763 3.173 -0.224 HAM U1S 30 U1S HAMA HAMA H 0 0 N N N 42.466 -0.300 13.199 2.032 2.949 -1.831 HAMA U1S 31 U1S HAJ HAJ H 0 1 N N N 43.038 -2.412 13.568 2.420 -0.739 -0.104 HAJ U1S 32 U1S HAJA HAJA H 0 0 N N N 42.774 -3.621 14.892 3.130 -0.476 1.507 HAJA U1S 33 U1S HAL HAL H 0 1 N N N 40.688 -3.210 13.646 0.851 0.505 1.352 HAL U1S 34 U1S HALA HALA H 0 0 N N N 40.566 -2.615 15.356 2.082 1.764 1.611 HALA U1S 35 U1S "H5'" "H5'" H 0 1 N N N 39.356 -1.258 15.529 0.363 3.264 0.726 "H5'" U1S 36 U1S "H5'A" "H5'A" H 0 0 N N N 39.650 0.419 14.892 -0.105 3.132 -0.986 "H5'A" U1S 37 U1S "H4'" "H4'" H 0 1 N N N 37.607 -1.365 14.460 -0.875 1.166 1.228 "H4'" U1S 38 U1S "H3'" "H3'" H 0 1 N N N 38.382 1.304 12.981 -2.351 3.433 -0.220 "H3'" U1S 39 U1S "HO3'" "HO3'" H 0 0 N N N 37.075 0.749 15.316 -3.154 3.710 2.012 "HO3'" U1S 40 U1S "H2'" "H2'" H 0 1 N N N 35.496 0.063 13.131 -3.707 1.046 1.159 "H2'" U1S 41 U1S "HO2'" "HO2'" H 0 0 N N N 36.273 2.138 12.172 -5.014 2.921 0.365 "HO2'" U1S 42 U1S "H1'" "H1'" H 0 1 N N N 36.895 -0.889 10.804 -3.209 0.994 -1.812 "H1'" U1S 43 U1S C16 C16 C 0 1 N N N 45.000 -3.361 14.124 6.640 -1.961 0.092 C16 U1S 44 U1S O6 O6 O 0 1 N N N 45.216 -2.590 15.195 5.622 -1.020 0.524 O6 U1S 45 U1S C17 C17 C 0 1 N N N 44.637 -1.528 15.425 5.052 -0.261 -0.426 C17 U1S 46 U1S O7 O7 O 0 1 N N N 44.904 -0.895 16.433 5.393 -0.379 -1.579 O7 U1S 47 U1S H21 H21 H 0 1 N N N 46.128 -4.952 13.165 6.349 -3.273 1.776 H21 U1S 48 U1S H22 H22 H 0 1 N N N 46.852 -4.344 14.692 7.933 -3.438 0.980 H22 U1S 49 U1S H23 H23 H 0 1 N N N 45.403 -5.403 14.745 7.601 -2.031 2.019 H23 U1S 50 U1S H24 H24 H 0 1 N N N 45.224 -2.789 13.211 7.459 -1.419 -0.380 H24 U1S 51 U1S H25 H25 H 0 1 N N N 43.948 -3.681 14.112 6.207 -2.661 -0.623 H25 U1S 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U1S C4 C5 SING N N 1 U1S C4 N3 SING N N 2 U1S C4 O4 DOUB N N 3 U1S C5 C6 DOUB N N 4 U1S C5 H5 SING N N 5 U1S C6 N1 SING N N 6 U1S C6 H6 SING N N 7 U1S N1 "C1'" SING N N 8 U1S N1 C2 SING N N 9 U1S N3 C2 SING N N 10 U1S N3 HN3 SING N N 11 U1S CAV CAK SING N N 12 U1S CAV CAJ SING N N 13 U1S CAV C17 SING N N 14 U1S CAV HAV SING N N 15 U1S CAK CAM SING N N 16 U1S CAK HAK SING N N 17 U1S CAK HAKA SING N N 18 U1S CAM NBA SING N N 19 U1S CAM HAM SING N N 20 U1S CAM HAMA SING N N 21 U1S CAJ CAL SING N N 22 U1S CAJ HAJ SING N N 23 U1S CAJ HAJA SING N N 24 U1S CAL NBA SING N N 25 U1S CAL HAL SING N N 26 U1S CAL HALA SING N N 27 U1S NBA "C5'" SING N N 28 U1S "C5'" "C4'" SING N N 29 U1S "C5'" "H5'" SING N N 30 U1S "C5'" "H5'A" SING N N 31 U1S "C4'" "O4'" SING N N 32 U1S "C4'" "C3'" SING N N 33 U1S "C4'" "H4'" SING N N 34 U1S "O4'" "C1'" SING N N 35 U1S "C3'" "O3'" SING N N 36 U1S "C3'" "C2'" SING N N 37 U1S "C3'" "H3'" SING N N 38 U1S "O3'" "HO3'" SING N N 39 U1S "C2'" "O2'" SING N N 40 U1S "C2'" "C1'" SING N N 41 U1S "C2'" "H2'" SING N N 42 U1S "O2'" "HO2'" SING N N 43 U1S "C1'" "H1'" SING N N 44 U1S C2 O2 DOUB N N 45 U1S C15 C16 SING N N 46 U1S C16 O6 SING N N 47 U1S O6 C17 SING N N 48 U1S C17 O7 DOUB N N 49 U1S C15 H21 SING N N 50 U1S C15 H22 SING N N 51 U1S C15 H23 SING N N 52 U1S C16 H24 SING N N 53 U1S C16 H25 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U1S SMILES ACDLabs 10.04 "O=C(OCC)C1CCN(CC1)CC3OC(N2C(=O)NC(=O)C=C2)C(O)C3O" U1S SMILES_CANONICAL CACTVS 3.341 "CCOC(=O)[C@H]1CCN(CC1)C[C@@H]2O[C@H]([C@H](O)[C@H]2O)N3C=CC(=O)NC3=O" U1S SMILES CACTVS 3.341 "CCOC(=O)[CH]1CCN(CC1)C[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O" U1S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C1CCN(CC1)C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O" U1S SMILES "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C1CCN(CC1)CC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O" U1S InChI InChI 1.03 "InChI=1S/C17H25N3O7/c1-2-26-16(24)10-3-6-19(7-4-10)9-11-13(22)14(23)15(27-11)20-8-5-12(21)18-17(20)25/h5,8,10-11,13-15,22-23H,2-4,6-7,9H2,1H3,(H,18,21,25)/t11-,13-,14+,15+/m0/s1" U1S InChIKey InChI 1.03 JCIDLMJUELAXRU-SPWCGHHHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U1S "SYSTEMATIC NAME" ACDLabs 10.04 "1-{5-deoxy-5-[4-(ethoxycarbonyl)piperidin-1-yl]-alpha-L-arabinofuranosyl}pyrimidine-2,4(1H,3H)-dione" U1S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "ethyl 1-[[(2S,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl]piperidine-4-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U1S "Create component" 2008-06-10 RCSB U1S "Modify descriptor" 2011-06-04 RCSB #