data_U2F # _chem_comp.id U2F _chem_comp.name "URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 F N2 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-10-20 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.293 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UQT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U2F C1 C1 C 0 1 N N R 36.379 25.672 14.627 6.957 2.761 -5.048 C1 U2F 1 U2F O1 O1 O 0 1 N N N 35.007 24.869 14.537 6.982 1.513 -5.737 O1 U2F 2 U2F PB PB P 0 1 N N R 34.271 24.121 15.744 6.790 0.139 -4.913 PB U2F 3 U2F O1B O1B O 0 1 N N N 33.864 22.753 15.262 6.835 -1.107 -5.748 O1B U2F 4 U2F O2B O2B O 0 1 N N N 35.512 23.768 16.530 7.903 0.198 -3.740 O2B U2F 5 U2F O3A O3A O 0 1 N N N 33.206 24.597 16.791 5.396 0.374 -4.128 O3A U2F 6 U2F PA PA P 0 1 N N R 32.010 25.602 16.518 4.636 -0.528 -3.023 PA U2F 7 U2F O1A O1A O 0 1 N N N 32.540 26.905 16.243 5.422 -0.774 -1.769 O1A U2F 8 U2F O2A O2A O 0 1 N N N 31.145 25.510 17.757 4.237 -1.859 -3.852 O2A U2F 9 U2F "O5'" "O5'" O 0 1 N N N 31.275 25.113 15.183 3.228 0.245 -2.828 "O5'" U2F 10 U2F "C5'" "C5'" C 0 1 N N N 30.558 23.901 15.258 3.242 1.544 -2.262 "C5'" U2F 11 U2F "C4'" "C4'" C 0 1 N N R 29.541 24.033 14.120 1.814 2.065 -2.179 "C4'" U2F 12 U2F "O4'" "O4'" O 0 1 N N N 29.072 22.750 13.718 1.855 3.410 -1.654 "O4'" U2F 13 U2F "C1'" "C1'" C 0 1 N N R 27.650 22.725 13.868 1.528 4.335 -2.703 "C1'" U2F 14 U2F "C2'" "C2'" C 0 1 N N R 27.339 23.649 14.994 1.551 3.545 -4.000 "C2'" U2F 15 U2F "C3'" "C3'" C 0 1 N N S 28.314 24.752 14.654 1.130 2.167 -3.536 "C3'" U2F 16 U2F "O3'" "O3'" O 0 1 N N N 27.779 25.605 13.673 -0.280 2.126 -3.322 "O3'" U2F 17 U2F "O2'" "O2'" O 0 1 N N N 26.024 24.071 14.948 0.676 4.073 -4.975 "O2'" U2F 18 U2F N1 N1 N 0 1 N N N 27.357 21.329 14.136 2.484 5.405 -2.696 N1 U2F 19 U2F "C6'" "C6'" C 0 1 N N N 26.320 20.741 13.419 2.120 6.719 -3.075 "C6'" U2F 20 U2F "O6'" "O6'" O 0 1 N N N 25.769 21.338 12.539 0.984 7.039 -3.432 "O6'" U2F 21 U2F N3 N3 N 0 1 N N N 26.038 19.394 13.603 3.155 7.663 -3.021 N3 U2F 22 U2F "C7'" "C7'" C 0 1 N N N 26.713 18.660 14.534 4.468 7.434 -2.640 "C7'" U2F 23 U2F "O7'" "O7'" O 0 1 N N N 26.416 17.603 14.679 5.342 8.295 -2.609 "O7'" U2F 24 U2F "C8'" "C8'" C 0 1 N N N 27.695 19.271 15.309 4.765 6.038 -2.260 "C8'" U2F 25 U2F "C9'" "C9'" C 0 1 N N N 28.036 20.608 15.102 3.789 5.128 -2.306 "C9'" U2F 26 U2F C2 C2 C 0 1 N N R 36.988 26.374 15.780 5.815 3.655 -5.517 C2 U2F 27 U2F F1 F1 F 0 1 N N N 37.493 25.417 16.691 4.661 2.935 -5.523 F1 U2F 28 U2F C3 C3 C 0 1 N N S 35.936 27.231 16.670 6.057 4.219 -6.911 C3 U2F 29 U2F O3 O3 O 0 1 N N N 36.299 27.727 18.113 5.072 5.224 -7.152 O3 U2F 30 U2F C4 C4 C 0 1 N N S 35.436 28.438 15.809 7.452 4.842 -6.999 C4 U2F 31 U2F O4 O4 O 0 1 N N N 34.176 29.006 16.498 7.751 5.150 -8.358 O4 U2F 32 U2F C5 C5 C 0 1 N N R 35.068 27.864 14.263 8.522 3.884 -6.460 C5 U2F 33 U2F C6 C6 C 0 1 N N N 34.825 29.128 13.332 9.894 4.550 -6.405 C6 U2F 34 U2F O6 O6 O 0 1 N N N 35.769 30.193 13.418 10.827 3.617 -5.891 O6 U2F 35 U2F O5 O5 O 0 1 N N N 36.183 27.019 13.860 8.204 3.453 -5.133 O5 U2F 36 U2F H1 H1 H 0 1 N N N 37.172 25.081 14.111 6.797 2.514 -3.994 H1 U2F 37 U2F "H5'1" "1H5'" H 0 0 N N N 30.113 23.684 16.257 3.689 1.489 -1.265 "H5'1" U2F 38 U2F "H5'2" "2H5'" H 0 0 N N N 31.189 22.983 15.214 3.853 2.197 -2.893 "H5'2" U2F 39 U2F "H4'" "H4'" H 0 1 N N N 29.980 24.584 13.256 1.244 1.450 -1.474 "H4'" U2F 40 U2F "H1'" "H1'" H 0 1 N N N 27.148 23.061 12.931 0.546 4.774 -2.496 "H1'" U2F 41 U2F "H2'" "H2'" H 0 1 N N N 27.581 23.184 15.978 2.563 3.508 -4.422 "H2'" U2F 42 U2F "H3'" "H3'" H 0 1 N N N 28.575 25.332 15.570 1.386 1.365 -4.234 "H3'" U2F 43 U2F HB HB H 0 1 N N N 27.012 26.055 14.007 -0.683 2.615 -4.055 HB U2F 44 U2F HA HA H 0 1 N N N 25.411 23.378 15.162 1.227 4.445 -5.686 HA U2F 45 U2F H3 H3 H 0 1 N N N 25.317 18.948 13.035 2.917 8.614 -3.289 H3 U2F 46 U2F "H8'" "H8'" H 0 1 N N N 28.209 18.692 16.095 5.771 5.785 -1.951 "H8'" U2F 47 U2F "H9'" "H9'" H 0 1 N N N 28.833 21.082 15.698 3.986 4.097 -2.031 "H9'" U2F 48 U2F H2 H2 H 0 1 N N N 37.814 27.035 15.428 5.677 4.483 -4.811 H2 U2F 49 U2F HC HC H 0 1 N N N 35.048 26.569 16.798 5.916 3.448 -7.677 HC U2F 50 U2F HD HD H 0 1 N N N 35.683 28.229 18.634 4.742 5.498 -6.283 HD U2F 51 U2F H4 H4 H 0 1 N N N 36.227 29.221 15.750 7.466 5.785 -6.439 H4 U2F 52 U2F HE HE H 0 1 N N N 33.872 29.739 15.975 7.869 4.302 -8.814 HE U2F 53 U2F H5 H5 H 0 1 N N N 34.137 27.252 14.307 8.615 3.008 -7.114 H5 U2F 54 U2F H6C1 1H6C H 0 0 N N N 33.799 29.527 13.510 9.858 5.421 -5.751 H6C1 U2F 55 U2F H6C2 2H6C H 0 0 N N N 34.737 28.795 12.271 10.201 4.853 -7.406 H6C2 U2F 56 U2F H6 H6 H 0 1 N N N 35.624 30.949 12.861 10.720 3.610 -4.924 H6 U2F 57 U2F HO1 HO1 H 0 1 N N N 31.698 25.491 18.529 3.836 -2.615 -3.373 HO1 U2F 58 U2F HO2 HO2 H 0 1 N N N 36.252 23.694 15.938 8.039 -0.592 -3.176 HO2 U2F 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U2F C1 O1 SING N N 1 U2F C1 C2 SING N N 2 U2F C1 O5 SING N N 3 U2F C1 H1 SING N N 4 U2F O1 PB SING N N 5 U2F PB O1B DOUB N N 6 U2F PB O2B SING N N 7 U2F PB O3A SING N N 8 U2F O3A PA SING N N 9 U2F PA O1A DOUB N N 10 U2F PA O2A SING N N 11 U2F PA "O5'" SING N N 12 U2F "O5'" "C5'" SING N N 13 U2F "C5'" "C4'" SING N N 14 U2F "C5'" "H5'1" SING N N 15 U2F "C5'" "H5'2" SING N N 16 U2F "C4'" "O4'" SING N N 17 U2F "C4'" "C3'" SING N N 18 U2F "C4'" "H4'" SING N N 19 U2F "O4'" "C1'" SING N N 20 U2F "C1'" "C2'" SING N N 21 U2F "C1'" N1 SING N N 22 U2F "C1'" "H1'" SING N N 23 U2F "C2'" "C3'" SING N N 24 U2F "C2'" "O2'" SING N N 25 U2F "C2'" "H2'" SING N N 26 U2F "C3'" "O3'" SING N N 27 U2F "C3'" "H3'" SING N N 28 U2F "O3'" HB SING N N 29 U2F "O2'" HA SING N N 30 U2F N1 "C6'" SING N N 31 U2F N1 "C9'" SING N N 32 U2F "C6'" "O6'" DOUB N N 33 U2F "C6'" N3 SING N N 34 U2F N3 "C7'" SING N N 35 U2F N3 H3 SING N N 36 U2F "C7'" "O7'" DOUB N N 37 U2F "C7'" "C8'" SING N N 38 U2F "C8'" "C9'" DOUB N N 39 U2F "C8'" "H8'" SING N N 40 U2F "C9'" "H9'" SING N N 41 U2F C2 F1 SING N N 42 U2F C2 C3 SING N N 43 U2F C2 H2 SING N N 44 U2F C3 O3 SING N N 45 U2F C3 C4 SING N N 46 U2F C3 HC SING N N 47 U2F O3 HD SING N N 48 U2F C4 O4 SING N N 49 U2F C4 C5 SING N N 50 U2F C4 H4 SING N N 51 U2F O4 HE SING N N 52 U2F C5 C6 SING N N 53 U2F C5 O5 SING N N 54 U2F C5 H5 SING N N 55 U2F C6 O6 SING N N 56 U2F C6 H6C1 SING N N 57 U2F C6 H6C2 SING N N 58 U2F O6 H6 SING N N 59 U2F HO1 O2A SING N N 60 U2F HO2 O2B SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U2F SMILES ACDLabs 10.04 "O=P(OC1OC(C(O)C(O)C1F)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O" U2F SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](F)[C@@H](O)[C@@H]1O" U2F SMILES CACTVS 3.341 "OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](F)[CH](O)[CH]1O" U2F SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)O[P@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)F)O)O" U2F SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)F)O)O" U2F InChI InChI 1.03 "InChI=1S/C15H23FN2O16P2/c16-8-11(23)9(21)5(3-19)32-14(8)33-36(28,29)34-35(26,27)30-4-6-10(22)12(24)13(31-6)18-2-1-7(20)17-15(18)25/h1-2,5-6,8-14,19,21-24H,3-4H2,(H,26,27)(H,28,29)(H,17,20,25)/t5-,6-,8-,9-,10-,11-,12-,13-,14-/m1/s1" U2F InChIKey InChI 1.03 NGTCPFGWXMBZEP-NQQHDEILSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U2F "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4S,5S,6R)-3-fluoro-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" U2F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4S,5S,6R)-3-fluoro-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U2F "Create component" 2003-10-20 RCSB U2F "Modify descriptor" 2011-06-04 RCSB #