data_U2G # _chem_comp.id U2G _chem_comp.name "URIDYLYL-2'-5'-PHOSPHO-GUANOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 N7 O13 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PHOSPHORIC ACID-2'-[2'-DEOXY-URIDINE]ESTER-5'-GUANOSINE ESTER" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 589.407 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U2G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 11BG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U2G N1G N1G N 0 1 N N N 1.715 34.045 70.785 -1.306 1.293 8.210 N1G U2G 1 U2G C2G C2G C 0 1 N N N 1.155 34.999 69.967 0.028 1.230 7.938 C2G U2G 2 U2G N2G N2G N 0 1 N N N 0.845 36.170 70.531 0.924 1.576 8.919 N2G U2G 3 U2G N3G N3G N 0 1 N N N 0.918 34.815 68.684 0.481 0.843 6.767 N3G U2G 4 U2G C4G C4G C 0 1 Y N N 1.307 33.589 68.269 -0.355 0.497 5.782 C4G U2G 5 U2G C5G C5G C 0 1 Y N N 1.881 32.573 68.993 -1.737 0.546 5.996 C5G U2G 6 U2G C6G C6G C 0 1 N N N 2.111 32.770 70.371 -2.211 0.965 7.262 C6G U2G 7 U2G O6G O6G O 0 1 N N N 2.580 31.971 71.188 -3.407 1.023 7.493 O6G U2G 8 U2G N7G N7G N 0 1 Y N N 2.120 31.468 68.187 -2.337 0.149 4.848 N7G U2G 9 U2G C8G C8G C 0 1 Y N N 1.687 31.827 67.009 -1.426 -0.133 3.962 C8G U2G 10 U2G N9G N9G N 0 1 Y N N 1.181 33.105 66.999 -0.186 0.066 4.494 N9G U2G 11 U2G C1B C1*G C 0 1 N N R 0.594 33.858 65.905 1.093 -0.141 3.811 C1B U2G 12 U2G C2B C2*G C 0 1 N N R 1.000 33.557 64.457 1.567 -1.600 3.990 C2B U2G 13 U2G O2B O2*G O 0 1 N N N 1.757 34.626 63.947 2.529 -1.695 5.043 O2B U2G 14 U2G C3B C3*G C 0 1 N N S -0.356 33.412 63.751 2.215 -1.952 2.630 C3B U2G 15 U2G O3B O3*G O 0 1 N N N -0.459 34.273 62.619 3.597 -2.272 2.801 O3B U2G 16 U2G C4B C4*G C 0 1 N N R -1.400 33.887 64.746 2.058 -0.663 1.794 C4B U2G 17 U2G O4B O4*G O 0 1 N N N -0.806 33.814 66.046 0.934 0.025 2.385 O4B U2G 18 U2G C5B C5*G C 0 1 N N N -2.657 33.059 64.676 1.764 -1.005 0.332 C5B U2G 19 U2G O5B O5*G O 0 1 N N N -3.267 32.931 65.978 1.552 0.199 -0.405 O5B U2G 20 U2G P P P 0 1 N N S -4.462 31.908 66.173 1.250 -0.234 -1.926 P U2G 21 U2G O1P O1P O 0 1 N N N -4.887 31.332 64.874 0.045 -1.093 -1.964 O1P U2G 22 U2G O2P O2P O 0 1 N N N -5.447 32.598 67.031 2.508 -1.048 -2.512 O2P U2G 23 U2G O5D O5*U O 0 1 N N N -1.060 31.785 71.178 0.557 1.249 -8.745 O5D U2G 24 U2G C5D C5*U C 0 1 N N N -0.762 30.406 70.858 1.380 0.928 -7.621 C5D U2G 25 U2G C4D C4*U C 0 1 N N R -1.759 29.898 69.848 0.835 1.627 -6.374 C4D U2G 26 U2G O4D O4*U O 0 1 N N N -3.082 29.904 70.418 -0.491 1.156 -6.086 O4D U2G 27 U2G C3D C3*U C 0 1 N N R -1.835 30.794 68.620 1.716 1.288 -5.156 C3D U2G 28 U2G O3D O3*U O 0 1 N N N -1.108 30.187 67.555 2.284 2.475 -4.600 O3D U2G 29 U2G C2D C2*U C 0 1 N N R -3.330 30.966 68.322 0.738 0.633 -4.151 C2D U2G 30 U2G O2D O2*U O 0 1 N N N -3.895 30.691 67.071 0.999 1.081 -2.819 O2D U2G 31 U2G C1D C1*U C 0 1 N N R -3.992 30.073 69.373 -0.635 1.151 -4.649 C1D U2G 32 U2G N1U N1U N 0 1 N N N -5.295 30.502 69.890 -1.711 0.245 -4.242 N1U U2G 33 U2G C2U C2U C 0 1 N N N -6.391 29.716 69.538 -1.653 -1.055 -4.583 C2U U2G 34 U2G O2U O2U O 0 1 N N N -6.287 28.708 68.851 -0.704 -1.464 -5.222 O2U U2G 35 U2G N3U N3U N 0 1 N N N -7.604 30.156 70.014 -2.626 -1.910 -4.218 N3U U2G 36 U2G C4U C4U C 0 1 N N N -7.835 31.286 70.780 -3.686 -1.472 -3.509 C4U U2G 37 U2G O4U O4U O 0 1 N N N -8.998 31.622 71.023 -4.569 -2.244 -3.182 O4U U2G 38 U2G C5U C5U C 0 1 N N N -6.649 32.041 71.114 -3.762 -0.105 -3.147 C5U U2G 39 U2G C6U C6U C 0 1 N N N -5.447 31.629 70.670 -2.770 0.729 -3.522 C6U U2G 40 U2G H1G H1G H 0 1 N N N 1.845 34.300 71.764 -1.607 1.583 9.085 H1G U2G 41 U2G H2G1 1H2G H 0 0 N N N 0.429 36.877 69.924 1.877 1.532 8.742 H2G1 U2G 42 U2G H2G2 2H2G H 0 0 N N N 1.669 36.556 70.991 0.604 1.867 9.787 H2G2 U2G 43 U2G H8G H8G H 0 1 N N N 1.741 31.145 66.143 -1.623 -0.475 2.957 H8G U2G 44 U2G "H1G'" *H1G H 0 0 N N N 1.037 34.873 66.028 1.843 0.551 4.193 "H1G'" U2G 45 U2G "H2G'" *H2G H 0 0 N N N 1.639 32.652 64.329 0.718 -2.254 4.189 "H2G'" U2G 46 U2G HOG2 2HOG H 0 0 N N N 2.008 34.439 63.050 2.830 -2.614 5.064 HOG2 U2G 47 U2G "H3G'" *H3G H 0 0 N N N -0.484 32.356 63.415 1.688 -2.780 2.157 "H3G'" U2G 48 U2G HOG3 3HOG H 0 0 N N N -1.297 34.183 62.182 3.633 -3.083 3.328 HOG3 U2G 49 U2G "H4G'" *H4G H 0 0 N N N -1.707 34.932 64.509 2.958 -0.052 1.866 "H4G'" U2G 50 U2G H5G1 1H5G H 0 0 N N N -3.374 33.463 63.924 2.611 -1.546 -0.090 H5G1 U2G 51 U2G H5G2 2H5G H 0 0 N N N -2.467 32.063 64.211 0.871 -1.627 0.277 H5G2 U2G 52 U2G HOP2 2HOP H 0 0 N N N -6.163 31.984 67.147 3.270 -0.454 -2.469 HOP2 U2G 53 U2G HOU5 5HOU H 0 0 N N N -0.431 32.105 71.814 0.934 0.790 -9.507 HOU5 U2G 54 U2G H5U1 1H5U H 0 0 N N N 0.290 30.270 70.516 2.399 1.264 -7.810 H5U1 U2G 55 U2G H5U2 2H5U H 0 0 N N N -0.718 29.762 71.767 1.376 -0.149 -7.464 H5U2 U2G 56 U2G "H4U'" *H4U H 0 0 N N N -1.421 28.874 69.563 0.820 2.706 -6.531 "H4U'" U2G 57 U2G "H3U'" *H3U H 0 0 N N N -1.373 31.798 68.769 2.501 0.586 -5.437 "H3U'" U2G 58 U2G HOU3 3HOU H 0 0 N N N -1.155 30.746 66.788 2.883 2.838 -5.267 HOU3 U2G 59 U2G "H2U'" *H2U H 0 0 N N N -3.500 32.067 68.337 0.788 -0.453 -4.210 "H2U'" U2G 60 U2G "H1U'" *H1U H 0 0 N N N -4.239 29.119 68.850 -0.822 2.158 -4.278 "H1U'" U2G 61 U2G H3U H3U H 0 1 N N N -8.415 29.586 69.774 -2.566 -2.845 -4.469 H3U U2G 62 U2G H5U H5U H 0 1 N N N -6.661 32.958 71.725 -4.603 0.264 -2.579 H5U U2G 63 U2G H6U H6U H 0 1 N N N -4.565 32.229 70.952 -2.811 1.775 -3.256 H6U U2G 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U2G N1G C2G SING N N 1 U2G N1G C6G SING N N 2 U2G N1G H1G SING N N 3 U2G C2G N2G SING N N 4 U2G C2G N3G DOUB N N 5 U2G N2G H2G1 SING N N 6 U2G N2G H2G2 SING N N 7 U2G N3G C4G SING N N 8 U2G C4G C5G DOUB Y N 9 U2G C4G N9G SING Y N 10 U2G C5G C6G SING N N 11 U2G C5G N7G SING Y N 12 U2G C6G O6G DOUB N N 13 U2G N7G C8G DOUB Y N 14 U2G C8G N9G SING Y N 15 U2G C8G H8G SING N N 16 U2G N9G C1B SING N N 17 U2G C1B C2B SING N N 18 U2G C1B O4B SING N N 19 U2G C1B "H1G'" SING N N 20 U2G C2B O2B SING N N 21 U2G C2B C3B SING N N 22 U2G C2B "H2G'" SING N N 23 U2G O2B HOG2 SING N N 24 U2G C3B O3B SING N N 25 U2G C3B C4B SING N N 26 U2G C3B "H3G'" SING N N 27 U2G O3B HOG3 SING N N 28 U2G C4B O4B SING N N 29 U2G C4B C5B SING N N 30 U2G C4B "H4G'" SING N N 31 U2G C5B O5B SING N N 32 U2G C5B H5G1 SING N N 33 U2G C5B H5G2 SING N N 34 U2G O5B P SING N N 35 U2G P O1P DOUB N N 36 U2G P O2P SING N N 37 U2G P O2D SING N N 38 U2G O2P HOP2 SING N N 39 U2G O5D C5D SING N N 40 U2G O5D HOU5 SING N N 41 U2G C5D C4D SING N N 42 U2G C5D H5U1 SING N N 43 U2G C5D H5U2 SING N N 44 U2G C4D O4D SING N N 45 U2G C4D C3D SING N N 46 U2G C4D "H4U'" SING N N 47 U2G O4D C1D SING N N 48 U2G C3D O3D SING N N 49 U2G C3D C2D SING N N 50 U2G C3D "H3U'" SING N N 51 U2G O3D HOU3 SING N N 52 U2G C2D O2D SING N N 53 U2G C2D C1D SING N N 54 U2G C2D "H2U'" SING N N 55 U2G C1D N1U SING N N 56 U2G C1D "H1U'" SING N N 57 U2G N1U C2U SING N N 58 U2G N1U C6U SING N N 59 U2G C2U O2U DOUB N N 60 U2G C2U N3U SING N N 61 U2G N3U C4U SING N N 62 U2G N3U H3U SING N N 63 U2G C4U O4U DOUB N N 64 U2G C4U C5U SING N N 65 U2G C5U C6U DOUB N N 66 U2G C5U H5U SING N N 67 U2G C6U H6U SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U2G SMILES ACDLabs 10.04 "O=C1C=CN(C(=O)N1)C5OC(CO)C(O)C5OP(=O)(O)OCC4OC(n3cnc2c3N=C(N)NC2=O)C(O)C4O" U2G SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO)O[C@H]4N5C=CC(=O)NC5=O)[C@@H](O)[C@H]3O" U2G SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO)O[CH]4N5C=CC(=O)NC5=O)[CH](O)[CH]3O" U2G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4N5C=CC(=O)NC5=O)CO)O)O)O)N=C(NC2=O)N" U2G SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4N5C=CC(=O)NC5=O)CO)O)O)O)N=C(NC2=O)N" U2G InChI InChI 1.03 "InChI=1S/C19H24N7O13P/c20-18-23-14-9(15(32)24-18)21-5-26(14)16-12(31)10(29)7(38-16)4-36-40(34,35)39-13-11(30)6(3-27)37-17(13)25-2-1-8(28)22-19(25)33/h1-2,5-7,10-13,16-17,27,29-31H,3-4H2,(H,34,35)(H,22,28,33)(H3,20,23,24,32)/t6-,7-,10-,11-,12-,13-,16-,17-/m1/s1" U2G InChIKey InChI 1.03 DFYLLEBFVZTKHD-VMIOUTBZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U2G "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3R,4R,5R)-2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-3-yl hydrogen (S)-phosphate (non-preferred name)" U2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U2G "Create component" 1999-07-08 RCSB U2G "Modify descriptor" 2011-06-04 RCSB U2G "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id U2G _pdbx_chem_comp_synonyms.name "PHOSPHORIC ACID-2'-[2'-DEOXY-URIDINE]ESTER-5'-GUANOSINE ESTER" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##