data_U2S # _chem_comp.id U2S _chem_comp.name "1-(5-deoxy-5-morpholin-4-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-06-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 313.306 _chem_comp.one_letter_code ? _chem_comp.three_letter_code U2S _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3D6P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal U2S C4 C4 C 0 1 N N N 34.941 -4.630 12.385 -4.001 1.908 -0.114 C4 U2S 1 U2S C5 C5 C 0 1 N N N 36.119 -4.523 13.123 -4.089 1.245 1.134 C5 U2S 2 U2S C6 C6 C 0 1 N N N 36.910 -3.382 12.962 -3.159 0.321 1.454 C6 U2S 3 U2S N1 N1 N 0 1 N N N 36.533 -2.331 12.082 -2.151 0.040 0.572 N1 U2S 4 U2S N3 N3 N 0 1 N N N 34.590 -3.611 11.494 -2.993 1.603 -0.956 N3 U2S 5 U2S OAM OAM O 0 1 N N N 43.670 -1.800 14.801 4.956 2.062 -0.091 OAM U2S 6 U2S CAK CAK C 0 1 N N N 42.780 -2.888 15.126 3.779 2.097 -0.903 CAK U2S 7 U2S CAM CAM C 0 1 N N N 41.390 -2.310 15.441 3.226 0.677 -1.051 CAM U2S 8 U2S CAJ CAJ C 0 1 N N N 43.245 -1.111 13.604 4.739 1.521 1.215 CAJ U2S 9 U2S CAL CAL C 0 1 N N N 41.900 -0.448 13.918 4.195 0.096 1.088 CAL U2S 10 U2S NBA NBA N 0 1 N N N 40.917 -1.468 14.328 2.966 0.116 0.282 NBA U2S 11 U2S "C5'" "C5'" C 0 1 N N N 39.752 -0.729 14.812 2.379 -1.227 0.183 "C5'" U2S 12 U2S "C4'" "C4'" C 0 1 N N S 38.557 -0.835 13.849 0.908 -1.113 -0.221 "C4'" U2S 13 U2S "O4'" "O4'" O 0 1 N N N 38.709 -1.355 12.477 0.169 -0.401 0.784 "O4'" U2S 14 U2S "C3'" "C3'" C 0 1 N N R 38.016 0.536 13.534 0.257 -2.517 -0.283 "C3'" U2S 15 U2S "O3'" "O3'" O 0 1 N N N 37.512 1.254 14.655 0.450 -3.119 -1.564 "O3'" U2S 16 U2S "C2'" "C2'" C 0 1 N N R 36.865 0.155 12.634 -1.237 -2.160 -0.052 "C2'" U2S 17 U2S "O2'" "O2'" O 0 1 N N N 36.788 1.258 11.753 -1.934 -3.251 0.553 "O2'" U2S 18 U2S "C1'" "C1'" C 0 1 N N R 37.390 -1.108 11.906 -1.142 -0.963 0.919 "C1'" U2S 19 U2S O4 O4 O 0 1 N N N 34.221 -5.621 12.475 -4.831 2.742 -0.427 O4 U2S 20 U2S C2 C2 C 0 1 N N N 35.363 -2.462 11.334 -2.079 0.676 -0.612 C2 U2S 21 U2S O2 O2 O 0 1 N N N 34.978 -1.579 10.568 -1.175 0.411 -1.380 O2 U2S 22 U2S H5 H5 H 0 1 N N N 36.414 -5.306 13.805 -4.890 1.477 1.821 H5 U2S 23 U2S H6 H6 H 0 1 N N N 37.831 -3.297 13.520 -3.210 -0.195 2.401 H6 U2S 24 U2S HN3 HN3 H 0 1 N N N 33.755 -3.710 10.953 -2.926 2.052 -1.813 HN3 U2S 25 U2S HAK HAK H 0 1 N N N 42.710 -3.579 14.273 3.030 2.732 -0.430 HAK U2S 26 U2S HAKA HAKA H 0 0 N N N 43.163 -3.438 15.998 4.027 2.495 -1.887 HAKA U2S 27 U2S HAM HAM H 0 1 N N N 40.682 -3.138 15.593 2.297 0.706 -1.622 HAM U2S 28 U2S HAMA HAMA H 0 0 N N N 41.458 -1.694 16.350 3.954 0.055 -1.572 HAMA U2S 29 U2S HAJ HAJ H 0 1 N N N 43.987 -0.351 13.318 5.681 1.504 1.763 HAJ U2S 30 U2S HAJA HAJA H 0 0 N N N 43.147 -1.814 12.764 4.018 2.140 1.749 HAJA U2S 31 U2S HAL HAL H 0 1 N N N 42.034 0.276 14.735 4.939 -0.535 0.601 HAL U2S 32 U2S HALA HALA H 0 0 N N N 41.532 0.066 13.018 3.974 -0.299 2.079 HALA U2S 33 U2S "H5'" "H5'" H 0 1 N N N 39.455 -1.143 15.787 2.918 -1.805 -0.568 "H5'" U2S 34 U2S "H5'A" "H5'A" H 0 0 N N N 40.032 0.332 14.891 2.453 -1.728 1.148 "H5'A" U2S 35 U2S "H4'" "H4'" H 0 1 N N N 37.962 -1.550 14.435 0.818 -0.610 -1.184 "H4'" U2S 36 U2S "H3'" "H3'" H 0 1 N N N 38.787 1.206 13.126 0.634 -3.161 0.512 "H3'" U2S 37 U2S "HO3'" "HO3'" H 0 0 N N N 37.400 0.660 15.388 0.059 -3.999 -1.649 "HO3'" U2S 38 U2S "H2'" "H2'" H 0 1 N N N 35.888 -0.048 13.098 -1.715 -1.868 -0.987 "H2'" U2S 39 U2S "HO2'" "HO2'" H 0 0 N N N 36.771 2.064 12.255 -1.944 -4.057 0.018 "HO2'" U2S 40 U2S "H1'" "H1'" H 0 1 N N N 37.395 -0.922 10.822 -1.295 -1.303 1.943 "H1'" U2S 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal U2S C4 C5 SING N N 1 U2S C4 N3 SING N N 2 U2S C4 O4 DOUB N N 3 U2S C5 C6 DOUB N N 4 U2S C6 N1 SING N N 5 U2S N1 "C1'" SING N N 6 U2S N1 C2 SING N N 7 U2S N3 C2 SING N N 8 U2S OAM CAK SING N N 9 U2S OAM CAJ SING N N 10 U2S CAK CAM SING N N 11 U2S CAM NBA SING N N 12 U2S CAJ CAL SING N N 13 U2S CAL NBA SING N N 14 U2S NBA "C5'" SING N N 15 U2S "C5'" "C4'" SING N N 16 U2S "C4'" "O4'" SING N N 17 U2S "C4'" "C3'" SING N N 18 U2S "O4'" "C1'" SING N N 19 U2S "C3'" "O3'" SING N N 20 U2S "C3'" "C2'" SING N N 21 U2S "C2'" "O2'" SING N N 22 U2S "C2'" "C1'" SING N N 23 U2S C2 O2 DOUB N N 24 U2S C5 H5 SING N N 25 U2S C6 H6 SING N N 26 U2S N3 HN3 SING N N 27 U2S CAK HAK SING N N 28 U2S CAK HAKA SING N N 29 U2S CAM HAM SING N N 30 U2S CAM HAMA SING N N 31 U2S CAJ HAJ SING N N 32 U2S CAJ HAJA SING N N 33 U2S CAL HAL SING N N 34 U2S CAL HALA SING N N 35 U2S "C5'" "H5'" SING N N 36 U2S "C5'" "H5'A" SING N N 37 U2S "C4'" "H4'" SING N N 38 U2S "C3'" "H3'" SING N N 39 U2S "O3'" "HO3'" SING N N 40 U2S "C2'" "H2'" SING N N 41 U2S "O2'" "HO2'" SING N N 42 U2S "C1'" "H1'" SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor U2S SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)CN3CCOCC3" U2S SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1[C@@H](O)[C@@H](O[C@H]1CN2CCOCC2)N3C=CC(=O)NC3=O" U2S SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CN2CCOCC2)N3C=CC(=O)NC3=O" U2S SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1COCCN1C[C@H]2[C@@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O" U2S SMILES "OpenEye OEToolkits" 1.5.0 "C1COCCN1CC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O" U2S InChI InChI 1.03 "InChI=1S/C13H19N3O6/c17-9-1-2-16(13(20)14-9)12-11(19)10(18)8(22-12)7-15-3-5-21-6-4-15/h1-2,8,10-12,18-19H,3-7H2,(H,14,17,20)/t8-,10-,11+,12+/m0/s1" U2S InChIKey InChI 1.03 LZYQLCIKQTYBER-OHBODLIOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier U2S "SYSTEMATIC NAME" ACDLabs 10.04 "1-(5-deoxy-5-morpholin-4-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione" U2S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,3R,4R,5S)-3,4-dihydroxy-5-(morpholin-4-ylmethyl)oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site U2S "Create component" 2008-06-10 RCSB U2S "Modify descriptor" 2011-06-04 RCSB #